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Conserved domains on  [gi|1935030295|ref|XP_037737944|]
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beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase isoform X1 [Chelonia mydas]

Protein Classification

glycosyltransferase family 17 protein( domain architecture ID 5158)

glycosyltransferase family 17 protein may act as a beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase that transfers the bisecting GlcNAc to the core mannose of complex N-glycans

CAZY:  GT17
EC:  2.4.1.144
Gene Ontology:  GO:0006487|GO:0003830

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Glyco_transf_17 super family cl04706
Glycosyltransferase family 17; This family represents beta-1,4-mannosyl-glycoprotein beta-1, ...
193-490 1.98e-27

Glycosyltransferase family 17; This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (EC:2.4.1.144). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression.


The actual alignment was detected with superfamily member pfam04724:

Pssm-ID: 428090  Cd Length: 349  Bit Score: 112.75  E-value: 1.98e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935030295 193 PREVPRRVINAININHEFDLLDARFHELGDVVDAFIVCESNFTAYGEPRPLKFREMllNGSFDYIRHKVLYVFLdhfppG 272
Cdd:pfam04724  68 LRESPRRVFDAVLFSNELDLLEIRWRELYPYVTQFVILESNTTFTGLPKPLFFAEN--RDRFAFAESKITYGTI-----P 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935030295 273 GR-----QDGWIADDYLRTFLTRdgTSRLRNLRLDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWkq 347
Cdd:pfam04724 141 GRflkpgEDPFVEEAYQRVAMDQ--LLRRAGIEEGDLLIMSDVDEIPSAHTIELLRWCDGIPPVLHLQLRNYLYSFEF-- 216
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935030295 348 pgtlEVVSGCTVGMLHaVYATDGIRLRRreyytmpgFRQyensTGHILVQwslgsplhfAGWHCSWCF-TPEGIYFKLVS 426
Cdd:pfam04724 217 ----PVDYKSWRASVH-RYQPGKTRYRH--------SRQ----SDVILAD---------AGWHCSFCFrHISEFVFKMKA 270
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1935030295 427 AQNGDFPRWGDYedkrdLNY--IRELIRTGG-WFDGNTQEYPPAD------PKEQMYA----PKYLLKNYQRFHYLL 490
Cdd:pfam04724 271 YSHADRVRRSSL-----LNPkrIQDVICKGSdLFDMLPEEYTFKElikkmgPIPRSYSavhlPRYLLENAEKFRFLL 342
 
Name Accession Description Interval E-value
Glyco_transf_17 pfam04724
Glycosyltransferase family 17; This family represents beta-1,4-mannosyl-glycoprotein beta-1, ...
193-490 1.98e-27

Glycosyltransferase family 17; This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (EC:2.4.1.144). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression.


Pssm-ID: 428090  Cd Length: 349  Bit Score: 112.75  E-value: 1.98e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935030295 193 PREVPRRVINAININHEFDLLDARFHELGDVVDAFIVCESNFTAYGEPRPLKFREMllNGSFDYIRHKVLYVFLdhfppG 272
Cdd:pfam04724  68 LRESPRRVFDAVLFSNELDLLEIRWRELYPYVTQFVILESNTTFTGLPKPLFFAEN--RDRFAFAESKITYGTI-----P 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935030295 273 GR-----QDGWIADDYLRTFLTRdgTSRLRNLRLDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWkq 347
Cdd:pfam04724 141 GRflkpgEDPFVEEAYQRVAMDQ--LLRRAGIEEGDLLIMSDVDEIPSAHTIELLRWCDGIPPVLHLQLRNYLYSFEF-- 216
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935030295 348 pgtlEVVSGCTVGMLHaVYATDGIRLRRreyytmpgFRQyensTGHILVQwslgsplhfAGWHCSWCF-TPEGIYFKLVS 426
Cdd:pfam04724 217 ----PVDYKSWRASVH-RYQPGKTRYRH--------SRQ----SDVILAD---------AGWHCSFCFrHISEFVFKMKA 270
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1935030295 427 AQNGDFPRWGDYedkrdLNY--IRELIRTGG-WFDGNTQEYPPAD------PKEQMYA----PKYLLKNYQRFHYLL 490
Cdd:pfam04724 271 YSHADRVRRSSL-----LNPkrIQDVICKGSdLFDMLPEEYTFKElikkmgPIPRSYSavhlPRYLLENAEKFRFLL 342
 
Name Accession Description Interval E-value
Glyco_transf_17 pfam04724
Glycosyltransferase family 17; This family represents beta-1,4-mannosyl-glycoprotein beta-1, ...
193-490 1.98e-27

Glycosyltransferase family 17; This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (EC:2.4.1.144). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression.


Pssm-ID: 428090  Cd Length: 349  Bit Score: 112.75  E-value: 1.98e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935030295 193 PREVPRRVINAININHEFDLLDARFHELGDVVDAFIVCESNFTAYGEPRPLKFREMllNGSFDYIRHKVLYVFLdhfppG 272
Cdd:pfam04724  68 LRESPRRVFDAVLFSNELDLLEIRWRELYPYVTQFVILESNTTFTGLPKPLFFAEN--RDRFAFAESKITYGTI-----P 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935030295 273 GR-----QDGWIADDYLRTFLTRdgTSRLRNLRLDDVFIIDDADEIPARDGVLFLKLYDGWTEPFAFHMRKSLYGFFWkq 347
Cdd:pfam04724 141 GRflkpgEDPFVEEAYQRVAMDQ--LLRRAGIEEGDLLIMSDVDEIPSAHTIELLRWCDGIPPVLHLQLRNYLYSFEF-- 216
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1935030295 348 pgtlEVVSGCTVGMLHaVYATDGIRLRRreyytmpgFRQyensTGHILVQwslgsplhfAGWHCSWCF-TPEGIYFKLVS 426
Cdd:pfam04724 217 ----PVDYKSWRASVH-RYQPGKTRYRH--------SRQ----SDVILAD---------AGWHCSFCFrHISEFVFKMKA 270
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1935030295 427 AQNGDFPRWGDYedkrdLNY--IRELIRTGG-WFDGNTQEYPPAD------PKEQMYA----PKYLLKNYQRFHYLL 490
Cdd:pfam04724 271 YSHADRVRRSSL-----LNPkrIQDVICKGSdLFDMLPEEYTFKElikkmgPIPRSYSavhlPRYLLENAEKFRFLL 342
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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