NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1931713329|ref|XP_037490030|]
View 

fam-c protein [Plasmodium vinckei vinckei]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PYST-C1 super family cl23940
Plasmodium yoelii subtelomeric region (PYST-C1); This group of sequences are defined by the ...
 1-63 1.22e-22

Plasmodium yoelii subtelomeric region (PYST-C1); This group of sequences are defined by the N-terminal domain of a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organizm. The C-terminal portions of the genes that contain this domain are divergent and some contain other yoelii-specific paralogous domains such as PYST-C2 (IPR006491).


The actual alignment was detected with superfamily member TIGR01601:

Pssm-ID: 420105  Cd Length: 82  Bit Score: 84.28  E-value: 1.22e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1931713329   1 MNKNIFSLVCIILYTLLAVSIHCSEQksdrsKTSGLRSRVIRAIQKIKRSNKKNDIEPQQENQ 63
Cdd:TIGR01601   1 MNKRIFSLVCIVLYILLAVSIHCSEQ-----KVSGVGNKSICGIKEINRSNEKNDIETKSEIQ 58
 
Name Accession Description Interval E-value
PYST-C1 TIGR01601
Plasmodium yoelii subtelomeric domain PYST-C1; This model represents the N-terminal domain of ...
 1-63 1.22e-22

Plasmodium yoelii subtelomeric domain PYST-C1; This model represents the N-terminal domain of a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism. The C-terminal portions of the genes which contain this domain are divergent and some contain other yoelii-specific paralogous domains such as PYST-C2 (TIGR01604).


Pssm-ID: 213640  Cd Length: 82  Bit Score: 84.28  E-value: 1.22e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1931713329   1 MNKNIFSLVCIILYTLLAVSIHCSEQksdrsKTSGLRSRVIRAIQKIKRSNKKNDIEPQQENQ 63
Cdd:TIGR01601   1 MNKRIFSLVCIVLYILLAVSIHCSEQ-----KVSGVGNKSICGIKEINRSNEKNDIETKSEIQ 58
PYST-C1 pfam09690
Plasmodium yoelii subtelomeric region (PYST-C1); This group of sequences are defined by the ...
 32-63 1.13e-06

Plasmodium yoelii subtelomeric region (PYST-C1); This group of sequences are defined by the N-terminal domain of a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organizm. The C-terminal portions of the genes that contain this domain are divergent and some contain other yoelii-specific paralogous domains such as PYST-C2 (IPR006491).


Pssm-ID: 401579  Cd Length: 55  Bit Score: 42.53  E-value: 1.13e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1931713329  32 KTSGLRSRVIRAIQKIKRSNKKNDIEPQQENQ 63
Cdd:pfam09690   1 KVSGVGNKSIRGTKKINISNEKNDIESKCETQ 32
 
Name Accession Description Interval E-value
PYST-C1 TIGR01601
Plasmodium yoelii subtelomeric domain PYST-C1; This model represents the N-terminal domain of ...
 1-63 1.22e-22

Plasmodium yoelii subtelomeric domain PYST-C1; This model represents the N-terminal domain of a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism. The C-terminal portions of the genes which contain this domain are divergent and some contain other yoelii-specific paralogous domains such as PYST-C2 (TIGR01604).


Pssm-ID: 213640  Cd Length: 82  Bit Score: 84.28  E-value: 1.22e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1931713329   1 MNKNIFSLVCIILYTLLAVSIHCSEQksdrsKTSGLRSRVIRAIQKIKRSNKKNDIEPQQENQ 63
Cdd:TIGR01601   1 MNKRIFSLVCIVLYILLAVSIHCSEQ-----KVSGVGNKSICGIKEINRSNEKNDIETKSEIQ 58
PYST-C1 pfam09690
Plasmodium yoelii subtelomeric region (PYST-C1); This group of sequences are defined by the ...
 32-63 1.13e-06

Plasmodium yoelii subtelomeric region (PYST-C1); This group of sequences are defined by the N-terminal domain of a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organizm. The C-terminal portions of the genes that contain this domain are divergent and some contain other yoelii-specific paralogous domains such as PYST-C2 (IPR006491).


Pssm-ID: 401579  Cd Length: 55  Bit Score: 42.53  E-value: 1.13e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1931713329  32 KTSGLRSRVIRAIQKIKRSNKKNDIEPQQENQ 63
Cdd:pfam09690   1 KVSGVGNKSIRGTKKINISNEKNDIESKCETQ 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH