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Conserved domains on  [gi|1784891620|ref|XP_031744112|]
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inactive protein RESTRICTED TEV MOVEMENT 2 isoform X2 [Cucumis sativus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00121 super family cl31754
MAEBL; Provisional
 166-448 7.58e-07

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.07  E-value: 7.58e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  166 SSDQKSTEKLTERGKDHDELSARVLSSLAQSDQETAEKLRQRDNELFPEISERQPSVRKPSTTVKELTEnyQKNISKTSS 245
Cdd:PTZ00121  1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE--AKKADEAKK 1322

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  246 APSTPRTAAPAPWNRSRKEEGKDQVASSDQKNAERGDLQPENSVVQNEKKLRKGDSRCVQITLDEQREIKPELSKSDHKD 325
Cdd:PTZ00121  1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  326 AKKDGNEGSAKMEKMLDASKAKEEAKKERIVDESKAKEEAKKERTVDESKAKEEAKKERIVDESKAKEEAKKERIVDESK 405
Cdd:PTZ00121  1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA 1482

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 1784891620  406 AKDDKREKKKPSVKGKGTldvVVARVKEMGKTALEAAKKEENR 448
Cdd:PTZ00121  1483 KKADEAKKKAEEAKKKAD---EAKKAAEAKKKADEAKKAEEAK 1522
 
Name Accession Description Interval E-value
PTZ00121 PTZ00121
MAEBL; Provisional
 166-448 7.58e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.07  E-value: 7.58e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  166 SSDQKSTEKLTERGKDHDELSARVLSSLAQSDQETAEKLRQRDNELFPEISERQPSVRKPSTTVKELTEnyQKNISKTSS 245
Cdd:PTZ00121  1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE--AKKADEAKK 1322

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  246 APSTPRTAAPAPWNRSRKEEGKDQVASSDQKNAERGDLQPENSVVQNEKKLRKGDSRCVQITLDEQREIKPELSKSDHKD 325
Cdd:PTZ00121  1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  326 AKKDGNEGSAKMEKMLDASKAKEEAKKERIVDESKAKEEAKKERTVDESKAKEEAKKERIVDESKAKEEAKKERIVDESK 405
Cdd:PTZ00121  1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA 1482

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 1784891620  406 AKDDKREKKKPSVKGKGTldvVVARVKEMGKTALEAAKKEENR 448
Cdd:PTZ00121  1483 KKADEAKKKAEEAKKKAD---EAKKAAEAKKKADEAKKAEEAK 1522
tolA_full TIGR02794
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ...
 253-415 8.77e-06

TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]


Pssm-ID: 274303 [Multi-domain]  Cd Length: 346  Bit Score: 47.53  E-value: 8.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 253 AAPAPWNRSRKEEgKDQVASSDQKNAERGDLQPENSVVQNEKKLRKGDsrcvqitldEQREIKPELSKSDHKDAKKDGNE 332
Cdd:TIGR02794  62 AAKKEQERQKKLE-QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAE---------QAAKQAEEKQKQAEEAKAKQAAE 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 333 GSAKMEKMLDASKAKEEAKKERIVDESKAKEEAKKE------RTVDESKAKEEAKKERIVDESKAKEEAKKERIVDESKA 406
Cdd:TIGR02794 132 AKAKAEAEAERKAKEEAAKQAEEEAKAKAAAEAKKKaeeakkKAEAEAKAKAEAEAKAKAEEAKAKAEAAKAKAAAEAAA 211


                  ....*....
gi 1784891620 407 KDDKREKKK 415
Cdd:TIGR02794 212 KAEAEAAAA 220
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 254-417 1.35e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 41.15  E-value: 1.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 254 APAPWNRSRKEEGKDQVASSDQ----KNAERGDLQPENSVVQNEKKLRKGDSRCVQITLDEQrEIKPElSKSDHKDAKKD 329
Cdd:NF033838  237 AKRRADAKLKEAVEKNVATSEQdkpkRRAKRGVLGEPATPDKKENDAKSSDSSVGEETLPSP-SLKPE-KKVAEAEKKVE 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 330 GNEGSAKMEKMLD---------ASKAKEEAKKERIVDESKA---KEEAKKERT---VDESKAKEEAKK------ERIVDE 388
Cdd:NF033838  315 EAKKKAKDQKEEDrrnyptntyKTLELEIAESDVKVKEAELelvKEEAKEPRNeekIKQAKAKVESKKaeatrlEKIKTD 394

                         170       180
                  ....*....|....*....|....*....
gi 1784891620 389 SKAKEEAKKERIVDESKAKDDKREKKKPS 417
Cdd:NF033838  395 RKKAEEEAKRKAAEEDKVKEKPAEQPQPA 423
 
Name Accession Description Interval E-value
PTZ00121 PTZ00121
MAEBL; Provisional
 166-448 7.58e-07

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 52.07  E-value: 7.58e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  166 SSDQKSTEKLTERGKDHDELSARVLSSLAQSDQETAEKLRQRDNELFPEISERQPSVRKPSTTVKELTEnyQKNISKTSS 245
Cdd:PTZ00121  1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE--AKKADEAKK 1322

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  246 APSTPRTAAPAPWNRSRKEEGKDQVASSDQKNAERGDLQPENSVVQNEKKLRKGDSRCVQITLDEQREIKPELSKSDHKD 325
Cdd:PTZ00121  1323 KAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  326 AKKDGNEGSAKMEKMLDASKAKEEAKKERIVDESKAKEEAKKERTVDESKAKEEAKKERIVDESKAKEEAKKERIVDESK 405
Cdd:PTZ00121  1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA 1482

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|...
gi 1784891620  406 AKDDKREKKKPSVKGKGTldvVVARVKEMGKTALEAAKKEENR 448
Cdd:PTZ00121  1483 KKADEAKKKAEEAKKKAD---EAKKAAEAKKKADEAKKAEEAK 1522
tolA_full TIGR02794
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ...
 253-415 8.77e-06

TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]


Pssm-ID: 274303 [Multi-domain]  Cd Length: 346  Bit Score: 47.53  E-value: 8.77e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 253 AAPAPWNRSRKEEgKDQVASSDQKNAERGDLQPENSVVQNEKKLRKGDsrcvqitldEQREIKPELSKSDHKDAKKDGNE 332
Cdd:TIGR02794  62 AAKKEQERQKKLE-QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAE---------QAAKQAEEKQKQAEEAKAKQAAE 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 333 GSAKMEKMLDASKAKEEAKKERIVDESKAKEEAKKE------RTVDESKAKEEAKKERIVDESKAKEEAKKERIVDESKA 406
Cdd:TIGR02794 132 AKAKAEAEAERKAKEEAAKQAEEEAKAKAAAEAKKKaeeakkKAEAEAKAKAEAEAKAKAEEAKAKAEAAKAKAAAEAAA 211


                  ....*....
gi 1784891620 407 KDDKREKKK 415
Cdd:TIGR02794 212 KAEAEAAAA 220
PTZ00121 PTZ00121
MAEBL; Provisional
 201-446 1.43e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.83  E-value: 1.43e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  201 AEKLRQRDNELFPEISERQPSVRKPSTTVKELTENYQKNISKTSSAPSTPRTAAPAPWNRSRKEEGKDQVASSDQ-KNAE 279
Cdd:PTZ00121  1208 AEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADElKKAE 1287

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  280 RGDLQPENSVVQNEKKLRKGDSRCVQITLDEQREIKPELSKSDHKDAKKDGNEGSAKMEkmldASKAKEEAKKERIvDES 359
Cdd:PTZ00121  1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE----AAKAEAEAAADEA-EAA 1362

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  360 KAKEEAKKERTVDESKAKEEAKKE----RIVDESKAKEEAKKERIVDESKAKDDKREKKKPSVKGKGtldvvVARVKEMG 435
Cdd:PTZ00121  1363 EEKAEAAEKKKEEAKKKADAAKKKaeekKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE-----KKKADEAK 1437

                          250
                   ....*....|.
gi 1784891620  436 KTALEAAKKEE 446
Cdd:PTZ00121  1438 KKAEEAKKADE 1448
PTZ00121 PTZ00121
MAEBL; Provisional
 114-448 1.56e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.83  E-value: 1.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  114 DRKSTEQVGEDRENLPASVPESLPSHQKSTDELTGGGGKDRGKSPASVLEPSSSDQKSTEKLTERGKDHDELSArvlssl 193
Cdd:PTZ00121  1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA------ 1361

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  194 AQSDQETAEKLRQRDNELFPEISERQPSVRKPSTTVKELTENYQK--NISKTSSAPSTPRTAAPAPWNRSRKEEGKDQvA 271
Cdd:PTZ00121  1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKadELKKAAAAKKKADEAKKKAEEKKKADEAKKK-A 1440

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  272 SSDQKNAERGDLQPENSVVQNEKKLRKGDSRCVQITLDEQREIKPELSKSDHKDAKKDGNEGSAKME--KMLDASKAKEE 349
Cdd:PTZ00121  1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEakKKADEAKKAEE 1520

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  350 AKKeriVDESKAKEEAKKE---RTVDESKAKEEAKKERIVDESKAKEEAKKERIVDESKAKDDKREKKKPSVKGKGTLDV 426
Cdd:PTZ00121  1521 AKK---ADEAKKAEEAKKAdeaKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597

                          330       340
                   ....*....|....*....|..
gi 1784891620  427 VVARVKEMGKTALEAAKKEENR 448
Cdd:PTZ00121  1598 MKLYEEEKKMKAEEAKKAEEAK 1619
PTZ00121 PTZ00121
MAEBL; Provisional
 201-446 2.54e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 47.06  E-value: 2.54e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  201 AEKLRQRDNELFPEISERQPSVRKPSTTVKELTENYQKNISKTSSAPSTPRTAAPAPWNRSRKEEGKDQVASSDQKNAER 280
Cdd:PTZ00121  1190 AEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQ 1269

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  281 GDLQPENSVVQNEKKLRKGDSRCVQITLDEQREIKPELSKSDHKDAKKDGNEGSAK-MEKMLDASKAKEEAKKERiVDES 359
Cdd:PTZ00121  1270 AAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEeAKKKADAAKKKAEEAKKA-AEAA 1348

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  360 KAKEEAKKERtVDESKAKEEAKKERIVDESKAKEEAKKE----RIVDESKAKDDKREKKKPSVKGKGTLDvvvARVKEMG 435
Cdd:PTZ00121  1349 KAEAEAAADE-AEAAEEKAEAAEKKKEEAKKKADAAKKKaeekKKADEAKKKAEEDKKKADELKKAAAAK---KKADEAK 1424

                          250
                   ....*....|.
gi 1784891620  436 KTALEAAKKEE 446
Cdd:PTZ00121  1425 KKAEEKKKADE 1435
tolA_full TIGR02794
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ...
 274-457 2.43e-04

TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]


Pssm-ID: 274303 [Multi-domain]  Cd Length: 346  Bit Score: 43.30  E-value: 2.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 274 DQKNAERGDLQPENSVVQNEKKLRKgdsrcvQITLDEQREIKPELSKSDHKDAKKDGNEGSAKMEKMLDASKAKEEAKKE 353
Cdd:TIGR02794  58 QKKPAAKKEQERQKKLEQQAEEAEK------QRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 354 RivdesKAKEEAKKERtvdesKAKEEAKKERiVDESKAKEEAKKERIVDESKAKDDKREKKKPSVKGKGTLDVVVARVKE 433
Cdd:TIGR02794 132 A-----KAKAEAEAER-----KAKEEAAKQA-EEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAEAKAKAEEAKAKAEA 200

                         170       180
                  ....*....|....*....|....*
gi 1784891620 434 M-GKTALEAAKKEENRAMVIAGAAA 457
Cdd:TIGR02794 201 AkAKAAAEAAAKAEAEAAAAAAAEA 225
PTZ00121 PTZ00121
MAEBL; Provisional
 260-446 2.94e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 2.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  260 RSRKEEGKDQVA---SSDQKNAERGDLQPENSVVQNEKKLRKGDSRcvqitLDEQREIKPELSKSDHKDAKKDGNEGSAK 336
Cdd:PTZ00121  1568 EAKKAEEDKNMAlrkAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK-----KAEEAKIKAEELKKAEEEKKKVEQLKKKE 1642

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  337 MEKMLDASKAKEEAKKERIVDESKAKEEAKKERTVDESKAKEEAKKERIVDESKAKEEAKKeriVDESKAKDDKREKKKP 416
Cdd:PTZ00121  1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK---AEELKKKEAEEKKKAE 1719

                          170       180       190
                   ....*....|....*....|....*....|
gi 1784891620  417 SVKGKGtlDVVVARVKEMGKTALEAAKKEE 446
Cdd:PTZ00121  1720 ELKKAE--EENKIKAEEAKKEAEEDKKKAE 1747
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 262-460 4.42e-04

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 42.63  E-value: 4.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 262 RKEEGKDQVA-----------SSDQKNAERGDLQPENSVVQNEKKLRKgdsrcvqitlDEQREIKPELSKSDHKDAKKDG 330
Cdd:PRK05035  480 RAAKDKDAVAaalarvkakkaAATQPIVIKAGARPDNSAVIAAREARK----------AQARARQAEKQAAAAADPKKAA 549

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 331 negsakmekmLDASKAKEEAKKerivdESKAKEEAKKERTVDESKAKEEAKKERivdeSKAKEEAKKER---------IV 401
Cdd:PRK05035  550 ----------VAAAIARAKAKK-----AAQQAANAEAEEEVDPKKAAVAAAIAR----AKAKKAAQQAAsaepeeqvaEV 610

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1784891620 402 DESKAKDDKREKKKPSVKGKGTLDVVVARVKEMGKTALEAAkkeenramvIAGAAAVLA 460
Cdd:PRK05035  611 DPKKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAA---------IARAKARKA 660
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 274-457 4.83e-04

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 42.49  E-value: 4.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 274 DQKNAERGDLQPENSVVQNEKKLR-KGDSRCVQITLDEQREIKPELSKSDHKDAKKDGNEGSAKMEKmlDASKAKEEAKK 352
Cdd:PRK09510   70 QQKSAKRAEEQRKKKEQQQAEELQqKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEE--AAAKAAAAAKA 147

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 353 ERIVDESKAKEEAKKERTVDESKAKEEAKKERIVDESKAKEEAKKERIVDESKAKDDKREKKKPSVKGKGTLDVVVARVK 432
Cdd:PRK09510  148 KAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAA 227

                         170       180
                  ....*....|....*....|....*
gi 1784891620 433 EMGKTALEAAKKEENRAMVIAGAAA 457
Cdd:PRK09510  228 AKAAAEAKAAAEKAAAAKAAEKAAA 252
PTZ00121 PTZ00121
MAEBL; Provisional
 262-433 1.31e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.67  E-value: 1.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  262 RKEEGKDQVASSDQKNAERGDLQPENSVVQNEKKLRKGDSRcvqiTLDEQREIKPELSKSDHKDAKKDGNEGSAKMEkml 341
Cdd:PTZ00121  1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA----KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE--- 1699

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  342 DASKAKEEAKKERivDESKAKEEAKKERTVDESKAkEEAKKERIVDESKAkEEAKKERIVDESKAKDDKREKKKPSVKGK 421
Cdd:PTZ00121  1700 EAKKAEELKKKEA--EEKKKAEELKKAEEENKIKA-EEAKKEAEEDKKKA-EEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775

                          170
                   ....*....|..
gi 1784891620  422 GTLDVVVARVKE 433
Cdd:PTZ00121  1776 EKEAVIEEELDE 1787
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 254-417 1.35e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 41.15  E-value: 1.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 254 APAPWNRSRKEEGKDQVASSDQ----KNAERGDLQPENSVVQNEKKLRKGDSRCVQITLDEQrEIKPElSKSDHKDAKKD 329
Cdd:NF033838  237 AKRRADAKLKEAVEKNVATSEQdkpkRRAKRGVLGEPATPDKKENDAKSSDSSVGEETLPSP-SLKPE-KKVAEAEKKVE 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 330 GNEGSAKMEKMLD---------ASKAKEEAKKERIVDESKA---KEEAKKERT---VDESKAKEEAKK------ERIVDE 388
Cdd:NF033838  315 EAKKKAKDQKEEDrrnyptntyKTLELEIAESDVKVKEAELelvKEEAKEPRNeekIKQAKAKVESKKaeatrlEKIKTD 394

                         170       180
                  ....*....|....*....|....*....
gi 1784891620 389 SKAKEEAKKERIVDESKAKDDKREKKKPS 417
Cdd:NF033838  395 RKKAEEEAKRKAAEEDKVKEKPAEQPQPA 423
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 359-460 2.34e-03

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 40.32  E-value: 2.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 359 SKAKEEAKKERTVDESKAKEEAKKERIVDESKAKEEAKKerivdesKAKDDKREKKKPSVKGKgtldvvVARVK-----E 433
Cdd:PRK05035  436 AEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHK-------KAAEARAAKDKDAVAAA------LARVKakkaaA 502

                          90       100
                  ....*....|....*....|....*..
gi 1784891620 434 MGKTALEAAKKEENRAMVIAGAAAVLA 460
Cdd:PRK05035  503 TQPIVIKAGARPDNSAVIAAREARKAQ 529
PRK12472 PRK12472
hypothetical protein; Provisional
 342-460 2.82e-03

hypothetical protein; Provisional


Pssm-ID: 237110 [Multi-domain]  Cd Length: 508  Bit Score: 40.24  E-value: 2.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 342 DASKAKEEAKKERIVDESKAKEEAKKERTVDESKAKEEAKKERIvdeSKAKEEAKkeriVDESKAKDDKREKKKPSVKGK 421
Cdd:PRK12472  201 DAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRA---DKALAAAK----TDEAKARAEERQQKAAQQAAE 273

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1784891620 422 GTLDVVVARVKEMGKTALEAAKKEENRAMVIAGAAAVLA 460
Cdd:PRK12472  274 AATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETAKA 312
PRK05901 PRK05901
RNA polymerase sigma factor; Provisional
 230-452 2.84e-03

RNA polymerase sigma factor; Provisional


Pssm-ID: 235640 [Multi-domain]  Cd Length: 509  Bit Score: 39.98  E-value: 2.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 230 KELTENYQKNISKTSSAPSTPRTAAPApwnRSRKEEGKDQVASSDQKNAERGDLQPENSVVQNEKKLRKGDSRCVQITLD 309
Cdd:PRK05901   18 KKLKKLAAKSKSKGFITKEEIKEALES---KKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKK 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620 310 EQREIKPELSKSDHKDAKKDGNEGSAKMEKMLDASKAKEEAKKERIVDESKAKEEAKKERTVDESKAKEEAKKER-IVDE 388
Cdd:PRK05901   95 KLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDeEKKE 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1784891620 389 SKAKEEAKKERIVDESKAKDDKREKKKPSVKGKGTLDVVVARVKEMGKTALEAAKKEENRAMVI 452
Cdd:PRK05901  175 AKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATADPVKAYLKQIGKVKLLNAEEEVELAKRI 238
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
 163-449 4.20e-03

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 39.64  E-value: 4.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  163 EPSSSDQKSTEKLTERGKDHDELSARVLSSLaqsdqeTAEKLRqrdnELFPEISERQPSVRK-PSTTVKEL--------- 232
Cdd:PTZ00108  1069 EDDEADDEDDEEELGAAVSYDYLLSMPIWSL------TKEKVE----KLNAELEKKEKELEKlKNTTPKDMwledldkfe 1138

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  233 -----TENY-QKNISKTSSAPSTPRTAAPapwnRSRKEEGKDQVASSDQKNAERGD--LQPENSVVQNEKKLRKGDSRCV 304
Cdd:PTZ00108  1139 ealeeQEEVeEKEIAKEQRLKSKTKGKAS----KLRKPKLKKKEKKKKKSSADKSKkaSVVGNSKRVDSDEKRKLDDKPD 1214

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  305 QITLDEQREIKPELSKSDHKDAKKDGNEGSAKMEKMLDASKAKEEAKKERIVDESKAKEEAKKERTVDESK--AKEEAKK 382
Cdd:PTZ00108  1215 NKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPppPSKRPDG 1294

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1784891620  383 ERIVDESKAKEEAKKERIVDESKAKddKREKKKPSvkgkgtlDVVVARVKEMGKTALEAAKKEENRA 449
Cdd:PTZ00108  1295 ESNGGSKPSSPTKKKVKKRLEGSLA--ALKKKKKS-------EKKTARKKKSKTRVKQASASQSSRL 1352
PTZ00121 PTZ00121
MAEBL; Provisional
 310-448 5.00e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 39.74  E-value: 5.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  310 EQREIKPELSKSDHKDAKKDGNEGSAKMEKMldasKAKEEAKKERIVDESKAKEEAKKERTVDESKAKEEAKKERI---- 385
Cdd:PTZ00121  1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEE----AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELkkke 1711

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1784891620  386 VDESKAKEEAKKERIVDESKAKDDKREKKKPSVKGKGtldvvvARVKEMGKTALEAAKKEENR 448
Cdd:PTZ00121  1712 AEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE------AKKDEEEKKKIAHLKKEEEK 1768
valS PRK14900
valyl-tRNA synthetase; Provisional
 181-397 5.67e-03

valyl-tRNA synthetase; Provisional


Pssm-ID: 237855 [Multi-domain]  Cd Length: 1052  Bit Score: 39.20  E-value: 5.67e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  181 DHDELSARVLSSLAQSDQETAEKLRQRDNELFpeISERQPS-VRKPSTTVKELTENYQK-NISKTSSAPSTPRTAapapw 258
Cdd:PRK14900   839 DLAAETARVDKEIGKVDQDLAVLERKLQNPSF--VQNAPPAvVEKDRARAEELREKRGKlEAHRAMLSGSEANSA----- 911

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  259 nRSRKEEGKDQVASSDQKNAERGDLQPENSVVQNEKKLRKGDSRCVQITLDEQREIKPELSKSDHKDAKKDGNEGSAKME 338
Cdd:PRK14900   912 -RRDTMEIQNEQKPTQDGPAAEAQPAQENTVVESAEKAVAAVSEAAQQAATAVASGIEKVAEAVRKTVRRSVKKAAATRA 990

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1784891620  339 KMLDASKAKEEAKKerivdeSKAKEEAKKERTVDESKAKEEAKKeRIVDESKAKEEAKK 397
Cdd:PRK14900   991 AMKKKVAKKAPAKK------AAAKKAAAKKAAAKKKVAKKAPAK-KVARKPAAKKAAKK 1042
PTZ00108 PTZ00108
DNA topoisomerase 2-like protein; Provisional
 165-409 9.32e-03

DNA topoisomerase 2-like protein; Provisional


Pssm-ID: 240271 [Multi-domain]  Cd Length: 1388  Bit Score: 38.87  E-value: 9.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  165 SSSDQKSTEKLTERGKDHDELSaRVLSSLAQSDQETAEKLRQRDNELFPEISERQPSVRKPSTTVKELTENYQKNISKTS 244
Cdd:PTZ00108  1158 LKSKTKGKASKLRKPKLKKKEK-KKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPK 1236

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  245 SAPSTPRTAAPAPWNRSRKEEGKDQVASSDQKNAERGDLQPENSVVQNEKKLRKgdsrcvqiTLDEQREIKPELSKSDhK 324
Cdd:PTZ00108  1237 KSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSK--------RPDGESNGGSKPSSPT-K 1307

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1784891620  325 DAKKDGNEGSAKmekmldASKAKEEAKKERIVDeSKAKEEAKKERTVDESKAKEEAKKER---IVDESKAKEEAKKERIV 401
Cdd:PTZ00108  1308 KKVKKRLEGSLA------ALKKKKKSEKKTARK-KKSKTRVKQASASQSSRLLRRPRKKKsdsSSEDDDDSEVDDSEDED 1380


                   ....*...
gi 1784891620  402 DESKAKDD 409
Cdd:PTZ00108  1381 DEDDEDDD 1388
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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