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Conserved domains on  [gi|1729138761|ref|XP_030415162|]
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uncharacterized protein LOC115650000 [Gopherus evgoodei]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UPF0730 pfam15827
UPF0730 unknown protein family; UPF0730 is a family of proteins found in eukaryotes. Proteins ...
 219-264 6.75e-24

UPF0730 unknown protein family; UPF0730 is a family of proteins found in eukaryotes. Proteins in this family are typically between 51 and 156 amino acids in length.


:

Pssm-ID: 406300  Cd Length: 46  Bit Score: 90.71  E-value: 6.75e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1729138761 219 ECCSQSLYYEELHSYHIVPYSTENSIYGMGYTSGHLEKNSQLLIYK 264
Cdd:pfam15827   1 ECCSQSLYYEELHSYHIVPYGSESCLYGLGYPGSHLEQNSQLLIYK 46
SERTA pfam06031
SERTA motif; This family consists of a novel motif designated as SERTA (for SEI-1, RBT1, and ...
 153-187 1.21e-08

SERTA motif; This family consists of a novel motif designated as SERTA (for SEI-1, RBT1, and TARA), corresponding to the largest conserved region among TRIP-Br proteins. The function of this motif is uncertain, but the CDK4-interacting segment of p34SEI-1 (amino acid residues 44-161) includes most of the SERTA motif.


:

Pssm-ID: 461806  Cd Length: 36  Bit Score: 49.85  E-value: 1.21e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1729138761 153 ILKLSLQKLRFLED-PETYLRRSVLINNLLRKIHLE 187
Cdd:pfam06031   1 VLNLSLDKLQRSRDlVEPSLRRSVLINNTLRRIQDE 36
 
Name Accession Description Interval E-value
UPF0730 pfam15827
UPF0730 unknown protein family; UPF0730 is a family of proteins found in eukaryotes. Proteins ...
 219-264 6.75e-24

UPF0730 unknown protein family; UPF0730 is a family of proteins found in eukaryotes. Proteins in this family are typically between 51 and 156 amino acids in length.


Pssm-ID: 406300  Cd Length: 46  Bit Score: 90.71  E-value: 6.75e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1729138761 219 ECCSQSLYYEELHSYHIVPYSTENSIYGMGYTSGHLEKNSQLLIYK 264
Cdd:pfam15827   1 ECCSQSLYYEELHSYHIVPYGSESCLYGLGYPGSHLEQNSQLLIYK 46
SERTA pfam06031
SERTA motif; This family consists of a novel motif designated as SERTA (for SEI-1, RBT1, and ...
 153-187 1.21e-08

SERTA motif; This family consists of a novel motif designated as SERTA (for SEI-1, RBT1, and TARA), corresponding to the largest conserved region among TRIP-Br proteins. The function of this motif is uncertain, but the CDK4-interacting segment of p34SEI-1 (amino acid residues 44-161) includes most of the SERTA motif.


Pssm-ID: 461806  Cd Length: 36  Bit Score: 49.85  E-value: 1.21e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1729138761 153 ILKLSLQKLRFLED-PETYLRRSVLINNLLRKIHLE 187
Cdd:pfam06031   1 VLNLSLDKLQRSRDlVEPSLRRSVLINNTLRRIQDE 36
 
Name Accession Description Interval E-value
UPF0730 pfam15827
UPF0730 unknown protein family; UPF0730 is a family of proteins found in eukaryotes. Proteins ...
 219-264 6.75e-24

UPF0730 unknown protein family; UPF0730 is a family of proteins found in eukaryotes. Proteins in this family are typically between 51 and 156 amino acids in length.


Pssm-ID: 406300  Cd Length: 46  Bit Score: 90.71  E-value: 6.75e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1729138761 219 ECCSQSLYYEELHSYHIVPYSTENSIYGMGYTSGHLEKNSQLLIYK 264
Cdd:pfam15827   1 ECCSQSLYYEELHSYHIVPYGSESCLYGLGYPGSHLEQNSQLLIYK 46
SERTA pfam06031
SERTA motif; This family consists of a novel motif designated as SERTA (for SEI-1, RBT1, and ...
 153-187 1.21e-08

SERTA motif; This family consists of a novel motif designated as SERTA (for SEI-1, RBT1, and TARA), corresponding to the largest conserved region among TRIP-Br proteins. The function of this motif is uncertain, but the CDK4-interacting segment of p34SEI-1 (amino acid residues 44-161) includes most of the SERTA motif.


Pssm-ID: 461806  Cd Length: 36  Bit Score: 49.85  E-value: 1.21e-08
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1729138761 153 ILKLSLQKLRFLED-PETYLRRSVLINNLLRKIHLE 187
Cdd:pfam06031   1 VLNLSLDKLQRSRDlVEPSLRRSVLINNTLRRIQDE 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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