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Conserved domains on  [gi|1728924327|ref|XP_030330123|]
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LOW QUALITY PROTEIN: host cell factor 1 [Strigops habroptila]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
30-349 2.68e-19

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 90.22  E-value: 2.68e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327   30 WS--GPVPRPRHGHRAVAIKELIVVFGGGNEG-IVDELHVYNTATNQWfipaVRGDIPPGCAAYGFVC--DGTRLLVFGG 104
Cdd:COG3055      3 WSslPDLPTPRSEAAAALLDGKVYVAGGLSGGsASNSFEVYDPATNTW----SELAPLPGPPRHHAAAvaQDGKLYVFGG 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  105 MVEY---GKYSNDLYELQASRWEWKRLkaktpknGPPPCPRLGHSFSLVGNKCYLFGGlandsedpkNNIPRYLNDLYIL 181
Cdd:COG3055     79 FTGAnpsSTPLNDVYVYDPATNTWTKL-------APMPTPRGGATALLLDGKIYVVGG---------WDDGGNVAWVEVY 142

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  182 ELRAGSgvlsWDipiTYGVLPPPRESHTAVVyteraARRSRLVIYGGMSGcrlgdlwtlDIETLTWNKPsvsGVAPLPRS 261
Cdd:COG3055    143 DPATGT----WT---QLAPLPTPRDHLAAAV-----LPDGKILVIGGRNG---------SGFSNTWTTL---APLPTARA 198

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  262 LHSATTIGNKMYVFGGwvplvmddvkvathekEWKCTNTLACLNLDSMAWEPIvmdtleDNVPRARAGHCAVAIATRLYI 341
Cdd:COG3055    199 GHAAAVLGGKILVFGG----------------ESGFSDEVEAYDPATNTWTAL------GELPTPRHGHAAVLTDGKVYV 256

                          330
                   ....*....|
gi 1728924327  342 WSG--RDGYR 349
Cdd:COG3055    257 IGGetKPGVR 266
DUF5585 super family cl39316
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 723-1042 1.56e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


The actual alignment was detected with superfamily member pfam17823:

Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 43.41  E-value: 1.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  723 TKPVQSSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSGDGKPTTLLSTSQAGA-GAAKPTLLGISSVSPSTTKPGTTT 801
Cdd:pfam17823   53 KSSEQ*NFCAATAAPAPVTLTKGTSAAHLNSTEVTAEHTPHGTDLSEPATREGAAdGAASRALAAAASSSPSSAAQSLPA 132

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  802 IIKTIPMSAIitQAGATGVTSSPGIKSPITIITTKVMTSgTGTPAkiitavPKLASGHGQQGVTQVVLKGAPGQPGTilr 881
Cdd:pfam17823  133 AIAALPSEAF--SAPRAAACRANASAAPRAAIAAASAPH-AASPA------PRTAASSTTAASSTTAASSAPTTAAS--- 200

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  882 tvpmggvrlVTPVTVSAVKPTVTTLVvkgttgvttlGTVTGTVSTSLAGAG-------------GHSATASLATPITTLG 948
Cdd:pfam17823  201 ---------SAPATLTPARGISTAAT----------ATGHPAAGTALAAVGnsspaagtvtaavGTVTPAALATLAAAAG 261

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  949 TIATLSSQV--LNPAAITVSAAQSTVTATGAlGTPTITMQPMAQPTQVTLITapgggveAQPVpdlpVSILASPTaeqPA 1026
Cdd:pfam17823  262 TVASAAGTInmGDPHARRLSPAKHMPSDTMA-RNPAAPMGAQAQGPIIQVST-------DQPV----HNTAGEPT---PS 326

                          330
                   ....*....|....*.
gi 1728924327 1027 PAGTEPDPGTVTLVCS 1042
Cdd:pfam17823  327 PSNTTLEPNTPKSVAS 342
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 1756-1785 9.29e-03

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 37.48  E-value: 9.29e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1728924327 1756 LQPGTAYKFRVAGVNVCGRGAFSELAAFKT 1785
Cdd:cd00063     64 LKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
 
Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
30-349 2.68e-19

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 90.22  E-value: 2.68e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327   30 WS--GPVPRPRHGHRAVAIKELIVVFGGGNEG-IVDELHVYNTATNQWfipaVRGDIPPGCAAYGFVC--DGTRLLVFGG 104
Cdd:COG3055      3 WSslPDLPTPRSEAAAALLDGKVYVAGGLSGGsASNSFEVYDPATNTW----SELAPLPGPPRHHAAAvaQDGKLYVFGG 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  105 MVEY---GKYSNDLYELQASRWEWKRLkaktpknGPPPCPRLGHSFSLVGNKCYLFGGlandsedpkNNIPRYLNDLYIL 181
Cdd:COG3055     79 FTGAnpsSTPLNDVYVYDPATNTWTKL-------APMPTPRGGATALLLDGKIYVVGG---------WDDGGNVAWVEVY 142

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  182 ELRAGSgvlsWDipiTYGVLPPPRESHTAVVyteraARRSRLVIYGGMSGcrlgdlwtlDIETLTWNKPsvsGVAPLPRS 261
Cdd:COG3055    143 DPATGT----WT---QLAPLPTPRDHLAAAV-----LPDGKILVIGGRNG---------SGFSNTWTTL---APLPTARA 198

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  262 LHSATTIGNKMYVFGGwvplvmddvkvathekEWKCTNTLACLNLDSMAWEPIvmdtleDNVPRARAGHCAVAIATRLYI 341
Cdd:COG3055    199 GHAAAVLGGKILVFGG----------------ESGFSDEVEAYDPATNTWTAL------GELPTPRHGHAAVLTDGKVYV 256

                          330
                   ....*....|
gi 1728924327  342 WSG--RDGYR 349
Cdd:COG3055    257 IGGetKPGVR 266
PLN02193 PLN02193
nitrile-specifier protein
 32-327 9.18e-16

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 82.31  E-value: 9.18e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327   32 GPVPRPRHGHRAVAIKelIVVFGGG---NEGIVDELHVYNTATNQWFIPAVRGDIPP-GCAAYGFVCDGTRLLVFGGMVE 107
Cdd:PLN02193   162 GPGLRCSHGIAQVGNK--IYSFGGEftpNQPIDKHLYVFDLETRTWSISPATGDVPHlSCLGVRMVSIGSTLYVFGGRDA 239

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  108 YGKYsNDLYELQASRWEWKRLkakTP-KNGppPCPRLGHSFSLVGNKCYLFGGLANDSE----DPKNNIPRYL----NDL 178
Cdd:PLN02193   240 SRQY-NGFYSFDTTTNEWKLL---TPvEEG--PTPRSFHSMAADEENVYVFGGVSATARlktlDSYNIVDKKWfhcsTPG 313

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  179 YILELRAGSGvlswdIPITYGvlpppresHTAVVYteraarrsrlviygGMSGCRLGDLWTLDIETLTWNKPSVSGVAPL 258
Cdd:PLN02193   314 DSFSIRGGAG-----LEVVQG--------KVWVVY--------------GFNGCEVDDVHYYDPVQDKWTQVETFGVRPS 366

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1728924327  259 PRSLHSATTIGNKMYVFGGwvPLVMDDVkvaTHEKEWKCTNTLACLNLDSMAWEPIVMDTLEDNVPRAR 327
Cdd:PLN02193   367 ERSVFASAAVGKHIVIFGG--EIAMDPL---AHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSR 430
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 37-74 1.05e-04

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 41.44  E-value: 1.05e-04
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1728924327   37 PRHGHRAVAIKELIVVFGGGNEG-IVDELHVYNTATNQW 74
Cdd:pfam01344    1 RRSGAGVVVVGGKIYVIGGFDGNqSLNSVEVYDPETNTW 39
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 723-1042 1.56e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 43.41  E-value: 1.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  723 TKPVQSSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSGDGKPTTLLSTSQAGA-GAAKPTLLGISSVSPSTTKPGTTT 801
Cdd:pfam17823   53 KSSEQ*NFCAATAAPAPVTLTKGTSAAHLNSTEVTAEHTPHGTDLSEPATREGAAdGAASRALAAAASSSPSSAAQSLPA 132

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  802 IIKTIPMSAIitQAGATGVTSSPGIKSPITIITTKVMTSgTGTPAkiitavPKLASGHGQQGVTQVVLKGAPGQPGTilr 881
Cdd:pfam17823  133 AIAALPSEAF--SAPRAAACRANASAAPRAAIAAASAPH-AASPA------PRTAASSTTAASSTTAASSAPTTAAS--- 200

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  882 tvpmggvrlVTPVTVSAVKPTVTTLVvkgttgvttlGTVTGTVSTSLAGAG-------------GHSATASLATPITTLG 948
Cdd:pfam17823  201 ---------SAPATLTPARGISTAAT----------ATGHPAAGTALAAVGnsspaagtvtaavGTVTPAALATLAAAAG 261

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  949 TIATLSSQV--LNPAAITVSAAQSTVTATGAlGTPTITMQPMAQPTQVTLITapgggveAQPVpdlpVSILASPTaeqPA 1026
Cdd:pfam17823  262 TVASAAGTInmGDPHARRLSPAKHMPSDTMA-RNPAAPMGAQAQGPIIQVST-------DQPV----HNTAGEPT---PS 326

                          330
                   ....*....|....*.
gi 1728924327 1027 PAGTEPDPGTVTLVCS 1042
Cdd:pfam17823  327 PSNTTLEPNTPKSVAS 342
PHA03255 PHA03255
BDLF3; Provisional
 717-857 2.76e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 41.43  E-value: 2.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  717 VMSVVQTKPVQSSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSGDGKPTTLLSTSQAGAGAAKPTLLGI-SSVSPSTT 795
Cdd:PHA03255    14 MILICETSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTgTTVTPVPT 93

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1728924327  796 KPGTTTIIKTIPMSAIITQAGATGVTSSPGIKSPITIITTKVmTSGTGTPAKIITAVPKLAS 857
Cdd:PHA03255    94 TSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSST-TSATTRITNATTLAPTLSS 154
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 643-980 8.41e-03

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 41.29  E-value: 8.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  643 SAAAQVGTSGGAAATNPPPARPIITVHKSGAVTVAQHQAQVVTTVVGGVTKTITLVKSPISVPGGSALISNLGKVMSVVQ 722
Cdd:COG3210    389 ASTGNASSTTVLGSGSLATGNTGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDVSG 468

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  723 TKPVQSSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSGDGKPTTLLSTSQAGAGAAKPTLLGISSVSPSTTKPGTTTI 802
Cdd:COG3210    469 TGTVTNSAGNTTSATTLAGGGIGTVTTNATISNNAGGDANGIATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTV 548

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  803 IktipmSAIITQAGATGVTSSPGIKSPITIITTKVMTSGTGTPAKIITAVPKLASGHGQQGVTQVVLKGAPGQPGTILRT 882
Cdd:COG3210    549 S-----GGASGTTAASGSNTANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGA 623

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  883 VPMGGVRLVTPVTVSAVKPTVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGHSATASLATPITTLGTIATLSSQVLNPAA 962
Cdd:COG3210    624 GANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAG 703

                          330
                   ....*....|....*...
gi 1728924327  963 ITVSAAQSTVTATGALGT 980
Cdd:COG3210    704 NTLTISTGSITVTGQIGA 721
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 1756-1785 9.29e-03

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 37.48  E-value: 9.29e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1728924327 1756 LQPGTAYKFRVAGVNVCGRGAFSELAAFKT 1785
Cdd:cd00063     64 LKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
 
Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
30-349 2.68e-19

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 90.22  E-value: 2.68e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327   30 WS--GPVPRPRHGHRAVAIKELIVVFGGGNEG-IVDELHVYNTATNQWfipaVRGDIPPGCAAYGFVC--DGTRLLVFGG 104
Cdd:COG3055      3 WSslPDLPTPRSEAAAALLDGKVYVAGGLSGGsASNSFEVYDPATNTW----SELAPLPGPPRHHAAAvaQDGKLYVFGG 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  105 MVEY---GKYSNDLYELQASRWEWKRLkaktpknGPPPCPRLGHSFSLVGNKCYLFGGlandsedpkNNIPRYLNDLYIL 181
Cdd:COG3055     79 FTGAnpsSTPLNDVYVYDPATNTWTKL-------APMPTPRGGATALLLDGKIYVVGG---------WDDGGNVAWVEVY 142

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  182 ELRAGSgvlsWDipiTYGVLPPPRESHTAVVyteraARRSRLVIYGGMSGcrlgdlwtlDIETLTWNKPsvsGVAPLPRS 261
Cdd:COG3055    143 DPATGT----WT---QLAPLPTPRDHLAAAV-----LPDGKILVIGGRNG---------SGFSNTWTTL---APLPTARA 198

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  262 LHSATTIGNKMYVFGGwvplvmddvkvathekEWKCTNTLACLNLDSMAWEPIvmdtleDNVPRARAGHCAVAIATRLYI 341
Cdd:COG3055    199 GHAAAVLGGKILVFGG----------------ESGFSDEVEAYDPATNTWTAL------GELPTPRHGHAAVLTDGKVYV 256

                          330
                   ....*....|
gi 1728924327  342 WSG--RDGYR 349
Cdd:COG3055    257 IGGetKPGVR 266
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
81-350 7.17e-17

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 82.90  E-value: 7.17e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327   81 GDIP-PGCAAYGFVCDGtRLLVFGGMvEYGKYSNDLYELQASRWEWKRLkaktpknGPPPCPRLGHSFSLV-GNKCYLFG 158
Cdd:COG3055      7 PDLPtPRSEAAAALLDG-KVYVAGGL-SGGSASNSFEVYDPATNTWSEL-------APLPGPPRHHAAAVAqDGKLYVFG 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  159 GLandseDPKNNIPRYLNDLYILELRAGSgvlsWdipITYGVLPPPRESHTAVVYTERAarrsrLVIYGGMSGCRLGDLW 238
Cdd:COG3055     78 GF-----TGANPSSTPLNDVYVYDPATNT----W---TKLAPMPTPRGGATALLLDGKI-----YVVGGWDDGGNVAWVE 140

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  239 TLDIETLTWnkpSVSGVAPLPRSLHSATTIGN-KMYVFGGwvplvmddVKVATHEKEWKctntlaclNLDSMawepivmd 317
Cdd:COG3055    141 VYDPATGTW---TQLAPLPTPRDHLAAAVLPDgKILVIGG--------RNGSGFSNTWT--------TLAPL-------- 193

                          250       260       270
                   ....*....|....*....|....*....|...
gi 1728924327  318 tlednvPRARAGHCAVAIATRLYIWSGRDGYRK 350
Cdd:COG3055    194 ------PTARAGHAAAVLGGKILVFGGESGFSD 220
PLN02193 PLN02193
nitrile-specifier protein
 32-327 9.18e-16

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 82.31  E-value: 9.18e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327   32 GPVPRPRHGHRAVAIKelIVVFGGG---NEGIVDELHVYNTATNQWFIPAVRGDIPP-GCAAYGFVCDGTRLLVFGGMVE 107
Cdd:PLN02193   162 GPGLRCSHGIAQVGNK--IYSFGGEftpNQPIDKHLYVFDLETRTWSISPATGDVPHlSCLGVRMVSIGSTLYVFGGRDA 239

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  108 YGKYsNDLYELQASRWEWKRLkakTP-KNGppPCPRLGHSFSLVGNKCYLFGGLANDSE----DPKNNIPRYL----NDL 178
Cdd:PLN02193   240 SRQY-NGFYSFDTTTNEWKLL---TPvEEG--PTPRSFHSMAADEENVYVFGGVSATARlktlDSYNIVDKKWfhcsTPG 313

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  179 YILELRAGSGvlswdIPITYGvlpppresHTAVVYteraarrsrlviygGMSGCRLGDLWTLDIETLTWNKPSVSGVAPL 258
Cdd:PLN02193   314 DSFSIRGGAG-----LEVVQG--------KVWVVY--------------GFNGCEVDDVHYYDPVQDKWTQVETFGVRPS 366

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1728924327  259 PRSLHSATTIGNKMYVFGGwvPLVMDDVkvaTHEKEWKCTNTLACLNLDSMAWEPIVMDTLEDNVPRAR 327
Cdd:PLN02193   367 ERSVFASAAVGKHIVIFGG--EIAMDPL---AHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSR 430
PLN02153 PLN02153
epithiospecifier protein
 24-312 4.91e-12

epithiospecifier protein


Pssm-ID: 177814 [Multi-domain]  Cd Length: 341  Bit Score: 69.63  E-value: 4.91e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327   24 WKRVLGWSGPVPRPRHGHRAVAIKELIVVFGGG---NEGIVDELHVYNTATNQWFIPAVRGDIPP-GCAAYGFVCDGTRL 99
Cdd:PLN02153     9 WIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGElkpNEHIDKDLYVFDFNTHTWSIAPANGDVPRiSCLGVRMVAVGTKL 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  100 LVFGGMVEYGKYsNDLYELQASRWEWKRLKAKTPKNGPPpcPRLGHSFSLVGNKCYLFGGLandSEDPKNNIPRYLNDLY 179
Cdd:PLN02153    89 YIFGGRDEKREF-SDFYSYDTVKNEWTFLTKLDEEGGPE--ARTFHSMASDENHVYVFGGV---SKGGLMKTPERFRTIE 162

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  180 ILELRAGSGVLswdipitygvLPPPRESHTAVVYTERAARRSRL-VIY--------GGMSGCRLGDLWTLDIETLTWNKP 250
Cdd:PLN02153   163 AYNIADGKWVQ----------LPDPGENFEKRGGAGFAVVQGKIwVVYgfatsilpGGKSDYESNAVQFFDPASGKWTEV 232

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1728924327  251 SVSGVAPLPRSLHSATTIGNKMYVFGGwvpLVMDDVKvaTHEKEWKCTNTLACLNLDSMAWE 312
Cdd:PLN02153   233 ETTGAKPSARSVFAHAVVGKYIIIFGG---EVWPDLK--GHLGPGTLSNEGYALDTETLVWE 289
PLN02153 PLN02153
epithiospecifier protein
 29-280 4.23e-11

epithiospecifier protein


Pssm-ID: 177814 [Multi-domain]  Cd Length: 341  Bit Score: 66.55  E-value: 4.23e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327   29 GWSGPVPRPRHGHRAVAIKelIVVFGGG---NEGIVDELHVYNTATNQWFIPAVRGDIPP-GCAAYGFVCDGTRLLVFGG 104
Cdd:PLN02153    16 GGKGPGPRCSHGIAVVGDK--LYSFGGElkpNEHIDKDLYVFDFNTHTWSIAPANGDVPRiSCLGVRMVAVGTKLYIFGG 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  105 MVEYGKYsNDLYELQASRWEWKRLKAKTPKNGPPPcpRLGHSFSLVGNKCYLFGGLANDS-------------------- 164
Cdd:PLN02153    94 RDEKREF-SDFYSYDTVKNEWTFLTKLDEEGGPEA--RTFHSMASDENHVYVFGGVSKGGlmktperfrtieayniadgk 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  165 ----EDPKNNiprylndlyiLELRAGSG--VLSWDIPITYG----VLPPPRESH--TAVVYTERAARR------------ 220
Cdd:PLN02153   171 wvqlPDPGEN----------FEKRGGAGfaVVQGKIWVVYGfatsILPGGKSDYesNAVQFFDPASGKwtevettgakps 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  221 -----------SRLVIYGG----------MSGCRLGDLWTLDIETLTWNKPSVSGVAPLPR---SLHSATTIG-NKMYVF 275
Cdd:PLN02153   241 arsvfahavvgKYIIIFGGevwpdlkghlGPGTLSNEGYALDTETLVWEKLGECGEPAMPRgwtAYTTATVYGkNGLLMH 320


                   ....*
gi 1728924327  276 GGWVP 280
Cdd:PLN02153   321 GGKLP 325
PLN02193 PLN02193
nitrile-specifier protein
 131-277 9.12e-09

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 59.97  E-value: 9.12e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  131 KTPKNGPPPCPRLGHSFSLVGNKCYLFGGlandSEDPKNNIPRYlndLYILELRAgsgvLSWDIPITYGVLPppresHTA 210
Cdd:PLN02193   155 KVEQKGEGPGLRCSHGIAQVGNKIYSFGG----EFTPNQPIDKH---LYVFDLET----RTWSISPATGDVP-----HLS 218

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1728924327  211 VVYTERAARRSRLVIYGGMSGCR-LGDLWTLDIETLTWNKPSVSGVAPLPRSLHSATTIGNKMYVFGG 277
Cdd:PLN02193   219 CLGVRMVSIGSTLYVFGGRDASRqYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGG 286
PRK14131 PRK14131
N-acetylneuraminate epimerase;
23-104 3.11e-05

N-acetylneuraminate epimerase;


Pssm-ID: 237617 [Multi-domain]  Cd Length: 376  Bit Score: 48.47  E-value: 3.11e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327   23 RWKRVLGWSGPvprPRHGHRAVAIKELIVVFGG----GNEG---IVDELHVYNTATNQWFIPAVRGdiPPGCA-AYGFVC 94
Cdd:PRK14131    63 GWTKIAAFPGG---PREQAVAAFIDGKLYVFGGigktNSEGspqVFDDVYKYDPKTNSWQKLDTRS--PVGLAgHVAVSL 137

                           90
                   ....*....|
gi 1728924327   95 DGTRLLVFGG 104
Cdd:PRK14131   138 HNGKAYITGG 147
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
32-119 4.43e-05

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 47.46  E-value: 4.43e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327   32 GPVPRPRHGHRAVAIKELIVVFGGGNeGIVDELHVYNTATNQWFipaVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKY 111
Cdd:COG3055    191 APLPTARAGHAAAVLGGKILVFGGES-GFSDEVEAYDPATNTWT---ALGELPTPRHGHAAVLTDGKVYVIGGETKPGVR 266


                   ....*...
gi 1728924327  112 SNDLYELQ 119
Cdd:COG3055    267 TPLVTSAE 274
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 37-74 1.05e-04

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 41.44  E-value: 1.05e-04
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1728924327   37 PRHGHRAVAIKELIVVFGGGNEG-IVDELHVYNTATNQW 74
Cdd:pfam01344    1 RRSGAGVVVVGGKIYVIGGFDGNqSLNSVEVYDPETNTW 39
Kelch_3 pfam13415
Galactose oxidase, central domain;
269-335 3.90e-04

Galactose oxidase, central domain;


Pssm-ID: 433188 [Multi-domain]  Cd Length: 49  Bit Score: 39.97  E-value: 3.90e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1728924327  269 GNKMYVFGGWVPLVMDdvkvathekewkCTNTLACLNLDSMAWEPIvmdtleDNVPRARAGHCAVAI 335
Cdd:pfam13415    1 GDKLYIFGGLGFDGQT------------RLNDLYVYDLDTNTWTQI------GDLPPPRSGHSATYI 49
Kelch_3 pfam13415
Galactose oxidase, central domain;
220-268 6.77e-04

Galactose oxidase, central domain;


Pssm-ID: 433188 [Multi-domain]  Cd Length: 49  Bit Score: 39.20  E-value: 6.77e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1728924327  220 RSRLVIYGG---MSGCRLGDLWTLDIETLTWnkpSVSGVAPLPRSLHSATTI 268
Cdd:pfam13415    1 GDKLYIFGGlgfDGQTRLNDLYVYDLDTNTW---TQIGDLPPPRSGHSATYI 49
PLN02193 PLN02193
nitrile-specifier protein
 247-398 1.24e-03

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 43.41  E-value: 1.24e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  247 WNKPSVSGVAPLPRSLHSATTIGNKMYVFGG-WVPlvmdDVKVATHekewkctntLACLNLDSMAWEpivMDTLEDNVPR 325
Cdd:PLN02193   153 WIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGeFTP----NQPIDKH---------LYVFDLETRTWS---ISPATGDVPH 216

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  326 ARA-GHCAVAIATRLYIWSGRDGYRK--AWNNQVCCKDLWYLET--ERPPAPARVQLVRANTTSLEVSWGAVPTA----- 395
Cdd:PLN02193   217 LSClGVRMVSIGSTLYVFGGRDASRQynGFYSFDTTTNEWKLLTpvEEGPTPRSFHSMAADEENVYVFGGVSATArlktl 296


                   ...
gi 1728924327  396 DSY 398
Cdd:PLN02193   297 DSY 299
Kelch_4 pfam13418
Galactose oxidase, central domain;
37-85 1.29e-03

Galactose oxidase, central domain;


Pssm-ID: 433191 [Multi-domain]  Cd Length: 49  Bit Score: 38.36  E-value: 1.29e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1728924327   37 PRHGHRAVAIKE-LIVVFGG--GNEGIVDELHVYNTATNQWfipAVRGDIPP 85
Cdd:pfam13418    1 PRAYHTSTSIPDdTIYLFGGegEDGTLLSDLWVFDLSTNEW---TRLGSLPS 49
DUF5585 pfam17823
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
 723-1042 1.56e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.


Pssm-ID: 465521 [Multi-domain]  Cd Length: 506  Bit Score: 43.41  E-value: 1.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  723 TKPVQSSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSGDGKPTTLLSTSQAGA-GAAKPTLLGISSVSPSTTKPGTTT 801
Cdd:pfam17823   53 KSSEQ*NFCAATAAPAPVTLTKGTSAAHLNSTEVTAEHTPHGTDLSEPATREGAAdGAASRALAAAASSSPSSAAQSLPA 132

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  802 IIKTIPMSAIitQAGATGVTSSPGIKSPITIITTKVMTSgTGTPAkiitavPKLASGHGQQGVTQVVLKGAPGQPGTilr 881
Cdd:pfam17823  133 AIAALPSEAF--SAPRAAACRANASAAPRAAIAAASAPH-AASPA------PRTAASSTTAASSTTAASSAPTTAAS--- 200

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  882 tvpmggvrlVTPVTVSAVKPTVTTLVvkgttgvttlGTVTGTVSTSLAGAG-------------GHSATASLATPITTLG 948
Cdd:pfam17823  201 ---------SAPATLTPARGISTAAT----------ATGHPAAGTALAAVGnsspaagtvtaavGTVTPAALATLAAAAG 261

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  949 TIATLSSQV--LNPAAITVSAAQSTVTATGAlGTPTITMQPMAQPTQVTLITapgggveAQPVpdlpVSILASPTaeqPA 1026
Cdd:pfam17823  262 TVASAAGTInmGDPHARRLSPAKHMPSDTMA-RNPAAPMGAQAQGPIIQVST-------DQPV----HNTAGEPT---PS 326

                          330
                   ....*....|....*.
gi 1728924327 1027 PAGTEPDPGTVTLVCS 1042
Cdd:pfam17823  327 PSNTTLEPNTPKSVAS 342
Kelch_5 pfam13854
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 35-72 2.58e-03

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 433528 [Multi-domain]  Cd Length: 41  Bit Score: 37.16  E-value: 2.58e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1728924327   35 PRPRHGHRAVAIKELIVVFGG---GNEGIVDELHVYNTATN 72
Cdd:pfam13854    1 PVPRYGHCAVTVGDYIYLYGGytgGEGQPSDDVYVLSLPTF 41
PHA03255 PHA03255
BDLF3; Provisional
 717-857 2.76e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 41.43  E-value: 2.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  717 VMSVVQTKPVQSSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSGDGKPTTLLSTSQAGAGAAKPTLLGI-SSVSPSTT 795
Cdd:PHA03255    14 MILICETSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTgTTVTPVPT 93

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1728924327  796 KPGTTTIIKTIPMSAIITQAGATGVTSSPGIKSPITIITTKVmTSGTGTPAKIITAVPKLAS 857
Cdd:PHA03255    94 TSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSST-TSATTRITNATTLAPTLSS 154
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 731-1002 3.03e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 42.60  E-value: 3.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  731 VTGQASTGPVTQIIQTKGPLPAGTilklvTSGDGKPTTLLSTSQAGAGAAKPTLL----GISSVSPSTTKP--------- 797
Cdd:pfam05109  458 LTAPASTGPTVSTADVTSPTPAGT-----TSGASPVTPSPSPRDNGTESKAPDMTsptsAVTTPTPNATSPtpavttptp 532

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  798 --GTTTIIKTIPMSAIITQAgATGVTSSPGIKSPITIITTKVM-----TSGTGTPAKIITAvPKLASGHGQQGVTQVVLK 870
Cdd:pfam05109  533 naTSPTLGKTSPTSAVTTPT-PNATSPTPAVTTPTPNATIPTLgktspTSAVTTPTPNATS-PTVGETSPQANTTNHTLG 610

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  871 GAPGQPgtILRTVPMGGVRLVTPVTVSAVKPTVTTLVVKGTTGVTTLGTVTGTVSTS----LAGA---GGHSATAslATP 943
Cdd:pfam05109  611 GTSSTP--VVTSPPKNATSAVTTGQHNITSSSTSSMSLRPSSISETLSPSTSDNSTShmplLTSAhptGGENITQ--VTP 686

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  944 ITTLGTIATLSSQVLNPAAITVSAA---QSTVTATGAL----GTP----TITMQPMAQPTQVTLITAPGG 1002
Cdd:pfam05109  687 ASTSTHHVSTSSPAPRPGTTSQASGpgnSSTSTKPGEVnvtkGTPpknaTSPQAPSGQKTAVPTVTSTGG 756
Kelch_3 pfam13415
Galactose oxidase, central domain;
151-213 4.58e-03

Galactose oxidase, central domain;


Pssm-ID: 433188 [Multi-domain]  Cd Length: 49  Bit Score: 36.88  E-value: 4.58e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1728924327  151 GNKCYLFGGLANDSEDpknniprYLNDLYILELRAGSgvlsWDipiTYGVLPPPRESHTAVVY 213
Cdd:pfam13415    1 GDKLYIFGGLGFDGQT-------RLNDLYVYDLDTNT----WT---QIGDLPPPRSGHSATYI 49
Kelch_5 pfam13854
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 324-356 5.41e-03

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 433528 [Multi-domain]  Cd Length: 41  Bit Score: 36.39  E-value: 5.41e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1728924327  324 PRARAGHCAVAIATRLYIWSGRDGYRKAWNNQV 356
Cdd:pfam13854    1 PVPRYGHCAVTVGDYIYLYGGYTGGEGQPSDDV 33
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
257-353 8.03e-03

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 40.52  E-value: 8.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  257 PLPRSLHSATTIGNKMYVFGGWvplvmddvkvatheKEWKCTNTLACLNLDSMAWEPIvmdtleDNVPRARAGH-CAVAI 335
Cdd:COG3055     10 PTPRSEAAAALLDGKVYVAGGL--------------SGGSASNSFEVYDPATNTWSEL------APLPGPPRHHaAAVAQ 69

                           90
                   ....*....|....*...
gi 1728924327  336 ATRLYIWSGRDGYRKAWN 353
Cdd:COG3055     70 DGKLYVFGGFTGANPSST 87
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 643-980 8.41e-03

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 41.29  E-value: 8.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  643 SAAAQVGTSGGAAATNPPPARPIITVHKSGAVTVAQHQAQVVTTVVGGVTKTITLVKSPISVPGGSALISNLGKVMSVVQ 722
Cdd:COG3210    389 ASTGNASSTTVLGSGSLATGNTGTTIAGNGGSANAGGFTTTGGVLGITGNGTVTGGTIGGLTGSGTTNGAGLSGNTDVSG 468

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  723 TKPVQSSAVTGQASTGPVTQIIQTKGPLPAGTILKLVTSGDGKPTTLLSTSQAGAGAAKPTLLGISSVSPSTTKPGTTTI 802
Cdd:COG3210    469 TGTVTNSAGNTTSATTLAGGGIGTVTTNATISNNAGGDANGIATGLTGITAGGGGGGNATSGGTGGDGTTLSGSGLTTTV 548

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  803 IktipmSAIITQAGATGVTSSPGIKSPITIITTKVMTSGTGTPAKIITAVPKLASGHGQQGVTQVVLKGAPGQPGTILRT 882
Cdd:COG3210    549 S-----GGASGTTAASGSNTANTLGVLAATGGTSNATTAGNSTSATGGTGTNSGGTVLSIGTGSAGATGTITLGAGTSGA 623

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1728924327  883 VPMGGVRLVTPVTVSAVKPTVTTLVVKGTTGVTTLGTVTGTVSTSLAGAGGHSATASLATPITTLGTIATLSSQVLNPAA 962
Cdd:COG3210    624 GANATGGGAGLTGSAVGAALSGTGSGTTGTASANGSNTTGVNTAGGTGGGTTGTVTSGATGGTTGTTLNAATGGTLNNAG 703

                          330
                   ....*....|....*...
gi 1728924327  963 ITVSAAQSTVTATGALGT 980
Cdd:COG3210    704 NTLTISTGSITVTGQIGA 721
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 1756-1785 9.29e-03

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 37.48  E-value: 9.29e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1728924327 1756 LQPGTAYKFRVAGVNVCGRGAFSELAAFKT 1785
Cdd:cd00063     64 LKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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