NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1527589457|ref|XP_027070765|]
View 

protein REVEILLE 8 isoform X1 [Coffea arabica]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 11492794)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 50-100 4.91e-17

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


:

Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 73.59  E-value: 4.91e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1527589457  50 KSRESWTEEEHDKFLEALQLFDR-DW---KKI-EDFVGSK-TVIQIRSHAQKYFLKV 100
Cdd:TIGR01557   1 KPRVVWTEDLHDRFLQAVQKLGGpDWatpKRIlELMVVDGlTRDQVASHLQKYRLKQ 57
COG5114 super family cl27155
Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics];
53-150 2.80e-03

Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics];


The actual alignment was detected with superfamily member COG5114:

Pssm-ID: 227445 [Multi-domain]  Cd Length: 432  Bit Score: 39.28  E-value: 2.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1527589457  53 ESWTEEEHDKFLEALQ-LFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKvQKNGTIAHVPPPRP--------KRKAAHPYP 123
Cdd:COG5114    64 EGWGADEELLLIECLDtLGLGNWEDIADYIGSRAKEEIKSHYLKMYDE-SKYYPLPDITQNIHvpqdefleQRRHRIETF 142

                          90       100
                  ....*....|....*....|....*..
gi 1527589457 124 QKAPKNVLVPvQASIAYPSSVNSLAPG 150
Cdd:COG5114   143 ELPPINPRKP-KASNPYCHEIQGYMPG 168
 
Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 50-100 4.91e-17

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 73.59  E-value: 4.91e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1527589457  50 KSRESWTEEEHDKFLEALQLFDR-DW---KKI-EDFVGSK-TVIQIRSHAQKYFLKV 100
Cdd:TIGR01557   1 KPRVVWTEDLHDRFLQAVQKLGGpDWatpKRIlELMVVDGlTRDQVASHLQKYRLKQ 57
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 52-97 1.21e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 61.37  E-value: 1.21e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1527589457  52 RESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYF 97
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
52-97 2.42e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 52.23  E-value: 2.42e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1527589457   52 RESWTEEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYF 97
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLL 47
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 54-97 5.41e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 51.04  E-value: 5.41e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1527589457  54 SWTEEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYF 97
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
RSC8 COG5259
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
 53-88 2.02e-03

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 39.48  E-value: 2.02e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1527589457  53 ESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQ 88
Cdd:COG5259   280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQ 315
COG5114 COG5114
Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics];
53-150 2.80e-03

Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics];


Pssm-ID: 227445 [Multi-domain]  Cd Length: 432  Bit Score: 39.28  E-value: 2.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1527589457  53 ESWTEEEHDKFLEALQ-LFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKvQKNGTIAHVPPPRP--------KRKAAHPYP 123
Cdd:COG5114    64 EGWGADEELLLIECLDtLGLGNWEDIADYIGSRAKEEIKSHYLKMYDE-SKYYPLPDITQNIHvpqdefleQRRHRIETF 142

                          90       100
                  ....*....|....*....|....*..
gi 1527589457 124 QKAPKNVLVPvQASIAYPSSVNSLAPG 150
Cdd:COG5114   143 ELPPINPRKP-KASNPYCHEIQGYMPG 168
 
Name Accession Description Interval E-value
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 50-100 4.91e-17

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 73.59  E-value: 4.91e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1527589457  50 KSRESWTEEEHDKFLEALQLFDR-DW---KKI-EDFVGSK-TVIQIRSHAQKYFLKV 100
Cdd:TIGR01557   1 KPRVVWTEDLHDRFLQAVQKLGGpDWatpKRIlELMVVDGlTRDQVASHLQKYRLKQ 57
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 52-97 1.21e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 61.37  E-value: 1.21e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1527589457  52 RESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYF 97
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
52-97 2.42e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 52.23  E-value: 2.42e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 1527589457   52 RESWTEEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYF 97
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLL 47
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 54-97 5.41e-09

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 51.04  E-value: 5.41e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1527589457  54 SWTEEEHDKFLEALQLFD-RDWKKIEDFVGSKTVIQIRSHAQKYF 97
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
RSC8 COG5259
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
 53-88 2.02e-03

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 39.48  E-value: 2.02e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1527589457  53 ESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQ 88
Cdd:COG5259   280 KNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQ 315
COG5114 COG5114
Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics];
53-150 2.80e-03

Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics];


Pssm-ID: 227445 [Multi-domain]  Cd Length: 432  Bit Score: 39.28  E-value: 2.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1527589457  53 ESWTEEEHDKFLEALQ-LFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKvQKNGTIAHVPPPRP--------KRKAAHPYP 123
Cdd:COG5114    64 EGWGADEELLLIECLDtLGLGNWEDIADYIGSRAKEEIKSHYLKMYDE-SKYYPLPDITQNIHvpqdefleQRRHRIETF 142

                          90       100
                  ....*....|....*....|....*..
gi 1527589457 124 QKAPKNVLVPvQASIAYPSSVNSLAPG 150
Cdd:COG5114   143 ELPPINPRKP-KASNPYCHEIQGYMPG 168
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 55-90 7.08e-03

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 34.21  E-value: 7.08e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1527589457  55 WTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIR 90
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCF 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH