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Conserved domains on  [gi|1444434128|ref|XP_025888585|]
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protein IQ-DOMAIN 1 [Solanum lycopersicum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4005 super family cl16148
Protein of unknown function (DUF4005); This is a C-terminal region of plant IQ-containing ...
 385-461 4.37e-08

Protein of unknown function (DUF4005); This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins.


The actual alignment was detected with superfamily member pfam13178:

Pssm-ID: 404128  Cd Length: 97  Bit Score: 50.70  E-value: 4.37e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1444434128 385 NRRHSIAGSSIRDDESLASSPSVPSYMASTQSAKAKTRLQNPLGMENGKPEKGSAGSVKKRLSYP-PSPARTRRHSGP 461
Cdd:pfam13178   5 SRDDRYSSSGTSNTPFTPSRSSLPNYMAATESAKAKLRSQSAPRQRPSTPERDRSGSAAKRLSLPaPSPNGKGSSYGP 82
 
Name Accession Description Interval E-value
DUF4005 pfam13178
Protein of unknown function (DUF4005); This is a C-terminal region of plant IQ-containing ...
 385-461 4.37e-08

Protein of unknown function (DUF4005); This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins.


Pssm-ID: 404128  Cd Length: 97  Bit Score: 50.70  E-value: 4.37e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1444434128 385 NRRHSIAGSSIRDDESLASSPSVPSYMASTQSAKAKTRLQNPLGMENGKPEKGSAGSVKKRLSYP-PSPARTRRHSGP 461
Cdd:pfam13178   5 SRDDRYSSSGTSNTPFTPSRSSLPNYMAATESAKAKLRSQSAPRQRPSTPERDRSGSAAKRLSLPaPSPNGKGSSYGP 82
 
Name Accession Description Interval E-value
DUF4005 pfam13178
Protein of unknown function (DUF4005); This is a C-terminal region of plant IQ-containing ...
 385-461 4.37e-08

Protein of unknown function (DUF4005); This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins.


Pssm-ID: 404128  Cd Length: 97  Bit Score: 50.70  E-value: 4.37e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1444434128 385 NRRHSIAGSSIRDDESLASSPSVPSYMASTQSAKAKTRLQNPLGMENGKPEKGSAGSVKKRLSYP-PSPARTRRHSGP 461
Cdd:pfam13178   5 SRDDRYSSSGTSNTPFTPSRSSLPNYMAATESAKAKLRSQSAPRQRPSTPERDRSGSAAKRLSLPaPSPNGKGSSYGP 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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