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Conserved domains on  [gi|1408474924|ref|XP_025125108|]
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kinesin light chain 3 [Bubalus bubalis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
204-411 3.01e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 95.84  E-value: 3.01e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEdlerssghCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIreqtl 283
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE--------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 284 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKFEEVERHYARALSIy 363
Cdd:COG0457    72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1408474924 364 ealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHREALPAPL 411
Cdd:COG0457   140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
FxSxx_TPR super family cl48889
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 34-451 8.79e-19

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


The actual alignment was detected with superfamily member NF040586:

Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 89.98  E-value: 8.79e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924  34 LEALRAEHRgLAGHLAEALAAQGPAA-GLELLEEKQQVVShSLEAIELGLGEAQVL-LALSAHVGAL------EAEKQRL 105
Cdd:NF040586  244 LDRLRERSP-AAARLLELCAFFGPEPiPLDLLRSSDEMAR-LLLPYDLRLRELLLDgILLSRALRELgryalaRVDSGRR 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 106 RAQARRLAQenAWLREELEETQRRlRASEEAvaqleeekshlefLGQLRQYDPPAESQQPESPPRRDSLGS-LFPSEEEE 184
Cdd:NF040586  322 TLQVHRLVQ--AVLRDRLSEEERA-RARHEV-------------HRILAAAAPGDEPDDPRNWPRYAELWPhLEPSGALE 385

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 185 RRGPEaagaaaaqqggyeipARlRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNK 264
Cdd:NF040586  386 SDDPE---------------VR-RLLLDQVRYLYLRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGR 449

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 265 YKEATDLLHDAL--QIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGTDHPDVAKQLNNLALL 342
Cdd:NF040586  450 YEEARELDEDTLerQRRVLGLGEDHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVS 529

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 343 CQNQGKFEEVERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL--HREALPAPlGAPNTGTTS 420
Cdd:NF040586  530 LRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALerYREVLGGP-DHPDTLRAA 608

                         410       420       430
                  ....*....|....*....|....*....|.
gi 1408474924 421 DAQQQTLRRSSSFSKLRESIRRGSEKLVSRL 451
Cdd:NF040586  609 KSLAVALRRAGRLEEALELAEDTYERYRRRF 639
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
204-411 3.01e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 95.84  E-value: 3.01e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEdlerssghCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIreqtl 283
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE--------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 284 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKFEEVERHYARALSIy 363
Cdd:COG0457    72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1408474924 364 ealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHREALPAPL 411
Cdd:COG0457   140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 204-397 1.51e-19

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 92.29  E-value: 1.51e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIREQTL 283
Cdd:NF040586  517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVL 596

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 284 -GPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKFEEVERHYARALSI 362
Cdd:NF040586  597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1408474924 363 YEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEEL 397
Cdd:NF040586  677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 34-451 8.79e-19

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 89.98  E-value: 8.79e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924  34 LEALRAEHRgLAGHLAEALAAQGPAA-GLELLEEKQQVVShSLEAIELGLGEAQVL-LALSAHVGAL------EAEKQRL 105
Cdd:NF040586  244 LDRLRERSP-AAARLLELCAFFGPEPiPLDLLRSSDEMAR-LLLPYDLRLRELLLDgILLSRALRELgryalaRVDSGRR 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 106 RAQARRLAQenAWLREELEETQRRlRASEEAvaqleeekshlefLGQLRQYDPPAESQQPESPPRRDSLGS-LFPSEEEE 184
Cdd:NF040586  322 TLQVHRLVQ--AVLRDRLSEEERA-RARHEV-------------HRILAAAAPGDEPDDPRNWPRYAELWPhLEPSGALE 385

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 185 RRGPEaagaaaaqqggyeipARlRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNK 264
Cdd:NF040586  386 SDDPE---------------VR-RLLLDQVRYLYLRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGR 449

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 265 YKEATDLLHDAL--QIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGTDHPDVAKQLNNLALL 342
Cdd:NF040586  450 YEEARELDEDTLerQRRVLGLGEDHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVS 529

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 343 CQNQGKFEEVERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL--HREALPAPlGAPNTGTTS 420
Cdd:NF040586  530 LRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALerYREVLGGP-DHPDTLRAA 608

                         410       420       430
                  ....*....|....*....|....*....|.
gi 1408474924 421 DAQQQTLRRSSSFSKLRESIRRGSEKLVSRL 451
Cdd:NF040586  609 KSLAVALRRAGRLEEALELAEDTYERYRRRF 639
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 221-404 2.53e-16

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 82.27  E-value: 2.53e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 221 GRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIREQTLGPEHPAVAATLNNLAVL 300
Cdd:NF040586  492 GRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARD 571

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 301 YGKRGRYREAEPLCQRALEIREKVL-GTDHPDVAKQLNNLALLCQNQGKFEEVERHYARALSIYEALGGPHDPNVAKTKN 379
Cdd:NF040586  572 LRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAAL 651

                         170       180
                  ....*....|....*....|....*
gi 1408474924 380 NLASAYLKQNKYQQAEELYKEILHR 404
Cdd:NF040586  652 SLANDLRALGDADEARELAREVLDR 676
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 204-404 2.66e-15

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 78.81  E-value: 2.66e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPD-VATMLNiLALVYRDQNKYKEATDLLHDALQIREQT 282
Cdd:NF040586  602 PDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLDRYRRV 680

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 283 LGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGTDHP---DVAKQL-NNLALLCQNQGKFEEVERHYAR 358
Cdd:NF040586  681 LGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEEALERLR 760

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1408474924 359 ALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHR 404
Cdd:NF040586  761 RLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLAR 806
TPR_12 pfam13424
Tetratricopeptide repeat;
290-365 4.50e-15

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 70.11  E-value: 4.50e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1408474924 290 VAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKFEEVERHYARALSIYEA 365
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 245-402 8.66e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.62  E-value: 8.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 245 HPDVATMLNILALVYRDQNKYKEATDLLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYReAEPLCQRALEIRekv 324
Cdd:TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLELKDPR-ALEYAERALKLA--- 833

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1408474924 325 lgtdhPDVAKQLNNLALLCQNQGKFEEVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:TIGR02917 834 -----PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 21-148 7.18e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 45.70  E-value: 7.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924  21 EELVRQTRQVVKGLEALRAEHRGLAGHLAEALAAqgpaagLELLEEKQQVVSHSLEAIELGLGEAQ-VLLALSAHVGALE 99
Cdd:COG1196   228 ELLLLKLRELEAELEELEAELEELEAELEELEAE------LAELEAELEELRLELEELELELEEAQaEEYELLAELARLE 301

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1408474924 100 AEKQRLRAQARRLAQENAWLREELEETQRRLRASEEAVAQLEEEKSHLE 148
Cdd:COG1196   302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 22-148 1.50e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 1.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924   22 ELVRQTRQVVKGLEALRAEHrgLAGHLAEALAAQGPAAG-LELLEEKQQVVSHSLEAIELGLGEAQ--------VLLALS 92
Cdd:TIGR02168  217 ELKAELRELELALLVLRLEE--LREELEELQEELKEAEEeLEELTAELQELEEKLEELRLEVSELEeeieelqkELYALA 294

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1408474924   93 AHVGALEAEKQRLRAQARRLAQENAWLREELEETQRRLRASEEAVAQLEEEKSHLE 148
Cdd:TIGR02168  295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 291-323 5.93e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 5.93e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1408474924  291 AATLNNLAVLYGKRGRYREAEPLCQRALEIREK 323
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 97-164 4.24e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 39.93  E-value: 4.24e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1408474924   97 ALEAEKQRLRAQARRLAQENAWLREELEETQRRLRASEEAVAQLEEEKSHLEF-LGQLRQYDPPAESQQ 164
Cdd:PRK11448   146 ALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAqLEQLQEKAAETSQER 214
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
204-411 3.01e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 95.84  E-value: 3.01e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEdlerssghCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIreqtl 283
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE--------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 284 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKFEEVERHYARALSIy 363
Cdd:COG0457    72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 1408474924 364 ealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHREALPAPL 411
Cdd:COG0457   140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 204-397 1.51e-19

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 92.29  E-value: 1.51e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIREQTL 283
Cdd:NF040586  517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVL 596

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 284 -GPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKFEEVERHYARALSI 362
Cdd:NF040586  597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 1408474924 363 YEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEEL 397
Cdd:NF040586  677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 134-411 3.76e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 90.82  E-value: 3.76e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 134 EEAVAQLEEEKSHLEFLGQLRQYDPPAESQQPESPPRRDSLGSLFPSEEEERRGPEAAGAAAAQQGGYEIPARLRTLHNL 213
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 214 VIQ----YASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATDLLHDALQIreqtlgpeHPA 289
Cdd:COG3914    81 LELaallLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPD 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 290 VAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKFEEVERHYARALSIyealggp 369
Cdd:COG3914   145 FAEAYLNLGEALRRLGRLEEAIAALRRALELD--------PDNAEALNNLGNALQDLGRLEEAIAAYRRALEL------- 209

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|..
gi 1408474924 370 hDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHREALPAPL 411
Cdd:COG3914   210 -DPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSEL 250
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 34-451 8.79e-19

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 89.98  E-value: 8.79e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924  34 LEALRAEHRgLAGHLAEALAAQGPAA-GLELLEEKQQVVShSLEAIELGLGEAQVL-LALSAHVGAL------EAEKQRL 105
Cdd:NF040586  244 LDRLRERSP-AAARLLELCAFFGPEPiPLDLLRSSDEMAR-LLLPYDLRLRELLLDgILLSRALRELgryalaRVDSGRR 321

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 106 RAQARRLAQenAWLREELEETQRRlRASEEAvaqleeekshlefLGQLRQYDPPAESQQPESPPRRDSLGS-LFPSEEEE 184
Cdd:NF040586  322 TLQVHRLVQ--AVLRDRLSEEERA-RARHEV-------------HRILAAAAPGDEPDDPRNWPRYAELWPhLEPSGALE 385

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 185 RRGPEaagaaaaqqggyeipARlRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNK 264
Cdd:NF040586  386 SDDPE---------------VR-RLLLDQVRYLYLRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGR 449

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 265 YKEATDLLHDAL--QIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGTDHPDVAKQLNNLALL 342
Cdd:NF040586  450 YEEARELDEDTLerQRRVLGLGEDHPHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVS 529

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 343 CQNQGKFEEVERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL--HREALPAPlGAPNTGTTS 420
Cdd:NF040586  530 LRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALerYREVLGGP-DHPDTLRAA 608

                         410       420       430
                  ....*....|....*....|....*....|.
gi 1408474924 421 DAQQQTLRRSSSFSKLRESIRRGSEKLVSRL 451
Cdd:NF040586  609 KSLAVALRRAGRLEEALELAEDTYERYRRRF 639
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 221-404 2.53e-16

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 82.27  E-value: 2.53e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 221 GRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIREQTLGPEHPAVAATLNNLAVL 300
Cdd:NF040586  492 GRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARD 571

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 301 YGKRGRYREAEPLCQRALEIREKVL-GTDHPDVAKQLNNLALLCQNQGKFEEVERHYARALSIYEALGGPHDPNVAKTKN 379
Cdd:NF040586  572 LRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAAL 651

                         170       180
                  ....*....|....*....|....*
gi 1408474924 380 NLASAYLKQNKYQQAEELYKEILHR 404
Cdd:NF040586  652 SLANDLRALGDADEARELAREVLDR 676
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 204-404 2.66e-15

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 78.81  E-value: 2.66e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPD-VATMLNiLALVYRDQNKYKEATDLLHDALQIREQT 282
Cdd:NF040586  602 PDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLDRYRRV 680

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 283 LGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGTDHP---DVAKQL-NNLALLCQNQGKFEEVERHYAR 358
Cdd:NF040586  681 LGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLDAALGEEALERLR 760

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 1408474924 359 ALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHR 404
Cdd:NF040586  761 RLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLAR 806
TPR_12 pfam13424
Tetratricopeptide repeat;
290-365 4.50e-15

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 70.11  E-value: 4.50e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1408474924 290 VAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKFEEVERHYARALSIYEA 365
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
204-413 6.27e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 74.27  E-value: 6.27e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATDLLHDALQIReqtl 283
Cdd:COG0457    39 PDDAEALYNLGLAYLRLGRYEEALADYEQALEL--------DPDDAEALNNLGLALQALGRYEEALEDYDKALELD---- 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 284 gpehPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKFEEVERHYARALSIY 363
Cdd:COG0457   107 ----PDDAEALYNLGLALLELGRYDEAIEAYERALELD--------PDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1408474924 364 EALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHREALPAPLGA 413
Cdd:COG0457   175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
TPR_12 pfam13424
Tetratricopeptide repeat;
247-323 7.40e-15

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 69.34  E-value: 7.40e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1408474924 247 DVATMLNILALVYRDQNKYKEATDLLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREK 323
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 91-358 1.14e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.49  E-value: 1.14e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924  91 LSAHVGALEAEKQRLRAQARRLAQENAWLREELEETQRRLRASEEAVAQLEEEKSHLEFLGQLRQYDPPAESQQPESPPR 170
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 171 RDSLGSLFpseEEERRGPEAAGAAAAQQGGYeiPARLRTLHNLVIQYASQGRYEVAVPLCRQALEdlerssghCHPDVAT 250
Cdd:COG3914    81 LELAALLL---QALGRYEEALALYRRALALN--PDNAEALFNLGNLLLALGRLEEALAALRRALA--------LNPDFAE 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 251 MLNILALVYRDQNKYKEATDLLHDALQIReqtlgPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgtdHP 330
Cdd:COG3914   148 AYLNLGEALRRLGRLEEAIAALRRALELD-----PDNAEA---LNNLGNALQDLGRLEEAIAAYRRALEL--------DP 211

                         250       260
                  ....*....|....*....|....*...
gi 1408474924 331 DVAKQLNNLALLCQNQGKFEEVERHYAR 358
Cdd:COG3914   212 DNADAHSNLLFALRQACDWEVYDRFEEL 239
TPR_10 pfam13374
Tetratricopeptide repeat;
290-331 2.34e-12

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 61.36  E-value: 2.34e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1408474924 290 VAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGTDHPD 331
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 204-413 6.90e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.91  E-value: 6.90e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATDLLHDALQIreqtl 283
Cdd:COG2956    73 PDRAEALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL----- 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 284 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKFEEVERHYARALSIy 363
Cdd:COG2956   140 ---GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCARALLLLAELYLEQGDYEEAIAALERALEQ- 207

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 1408474924 364 ealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHREALPAPLGA 413
Cdd:COG2956   208 -------DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA 250
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 217-405 9.62e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 65.52  E-value: 9.62e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 217 YASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATDLLHDALQIReqtlgpehPAVAATLNN 296
Cdd:COG2956    52 YRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD--------PDDAEALRL 115

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 297 LAVLYGKRGRYREAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKFEEVERHYARALSIyealggphDPNVAK 376
Cdd:COG2956   116 LAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCAR 179

                         170       180
                  ....*....|....*....|....*....
gi 1408474924 377 TKNNLASAYLKQNKYQQAEELYKEILHRE 405
Cdd:COG2956   180 ALLLLAELYLEQGDYEEAIAALERALEQD 208
TPR_12 pfam13424
Tetratricopeptide repeat;
331-402 3.40e-11

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 58.94  E-value: 3.40e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1408474924 331 DVAKQLNNLALLCQNQGKFEEVERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 254-404 4.07e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.51  E-value: 4.07e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 254 ILALVYRDQNKYKEATDLLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgtdHPDVA 333
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRA 76

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1408474924 334 KQLNNLALLCQNQGKFEEVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHR 404
Cdd:COG2956    77 EALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 205-363 8.32e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.12  E-value: 8.32e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 205 ARLRTLHNLVIQYASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATDLLHDALQIreqtlg 284
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1408474924 285 peHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEirekvLGTDHPDVakqLNNLALLCQNQGKFEEVERHYARALSIY 363
Cdd:COG4783    68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALK-----LDPEHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
TPR_10 pfam13374
Tetratricopeptide repeat;
248-288 4.40e-09

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 52.12  E-value: 4.40e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1408474924 248 VATMLNILALVYRDQNKYKEATDLLHDALQIREQTLGPEHP 288
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
TPR_12 pfam13424
Tetratricopeptide repeat;
206-281 5.92e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 52.77  E-value: 5.92e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1408474924 206 RLRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIREQ 281
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 255-406 9.36e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.04  E-value: 9.36e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 255 LALVYRDQNKYKEATDLLHDALQireqtlgpEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgtdHPDVAK 334
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALE--------LDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPE 73

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1408474924 335 QLNNLALLCQNQGKFEEVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHREA 406
Cdd:COG4783    74 ARLNLGLALLKAGDYDEALALLEKALKL--------DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
300-406 1.94e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 51.71  E-value: 1.94e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 300 LYGKRGRYREAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKFEEVERhYARALSIyealggphDPNVAKTKN 379
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL--------DPNNAEALL 63

                          90       100
                  ....*....|....*....|....*..
gi 1408474924 380 NLASAYLKQNKYQQAEELYKEILHREA 406
Cdd:COG3063    64 NLAELLLELGDYDEALAYLERALELDP 90
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 286-402 1.37e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.39  E-value: 1.37e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 286 EHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKFEEVERHYARALSIyea 365
Cdd:COG4235    12 ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL--- 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1408474924 366 lggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:COG4235    81 -----DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLL 112
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
258-366 2.36e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 48.63  E-value: 2.36e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 258 VYRDQNKYKEATDLLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYREAEPLcQRALEIrekvlgtdHPDVAKQLN 337
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63

                          90       100
                  ....*....|....*....|....*....
gi 1408474924 338 NLALLCQNQGKFEEVERHYARALSIYEAL 366
Cdd:COG3063    64 NLAELLLELGDYDEALAYLERALELDPSA 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 249-407 4.22e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.57  E-value: 4.22e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 249 ATMLNILALVYRDQNKYKEATDLLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgtd 328
Cdd:COG5010    12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-------- 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1408474924 329 HPDVAKQLNNLALLCQNQGKFEEVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHREAL 407
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 289-405 6.17e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.65  E-value: 6.17e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 289 AVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKFEEVERHYARALSIyealgg 368
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1408474924 369 phDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHRE 405
Cdd:COG4783    68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALKLD 102
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
217-325 6.77e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 6.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 217 YASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATDLlHDALQIreqtlgpeHPAVAATLNN 296
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLN 64

                          90       100
                  ....*....|....*....|....*....
gi 1408474924 297 LAVLYGKRGRYREAEPLCQRALEIREKVL 325
Cdd:COG3063    65 LAELLLELGDYDEALAYLERALELDPSAL 93
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
212-402 7.70e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.91  E-value: 7.70e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 212 NLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIReqtlgpehPAVA 291
Cdd:COG4785    36 ALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLA 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 292 ATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKFEEVERHYARALSIYEALGGPH- 370
Cdd:COG4785   108 EAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAl 179

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 1408474924 371 ---------DPNVAKT--KNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:COG4785   180 wlylaerklDPEKALAllLEDWATAYLLQGDTEEARELFKLAL 222
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 245-402 8.66e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.62  E-value: 8.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 245 HPDVATMLNILALVYRDQNKYKEATDLLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYReAEPLCQRALEIRekv 324
Cdd:TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLELKDPR-ALEYAERALKLA--- 833

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1408474924 325 lgtdhPDVAKQLNNLALLCQNQGKFEEVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:TIGR02917 834 -----PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
255-403 9.17e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.83  E-value: 9.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 255 LALVYRDQNKYKEATDLLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgtdhPDVAK 334
Cdd:COG4785    37 LAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLAE 108

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1408474924 335 QLNNLALLCQNQGKFEEVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILH 403
Cdd:COG4785   109 AYNNRGLAYLLLGDYDAALEDFDRALEL--------DPDYAYAYLNRGIALYYLGRYELAIADLEKALE 169
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 255-402 9.43e-06

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 46.95  E-value: 9.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 255 LALVYRDQNKYKEATDLLHDALQIReqtlgpehPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgtdHPDVAK 334
Cdd:TIGR02521  37 LALGYLEQGDLEVAKENLDKALEHD--------PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNGD 100

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1408474924 335 QLNNL-ALLCQnQGKFEEVERHYARALSiyealgGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:TIGR02521 101 VLNNYgTFLCQ-QGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 255-384 1.44e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.61  E-value: 1.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 255 LALVYRDQNKYKEATDLLHDALQIReqtlgPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgtdHPDVAK 334
Cdd:COG4235    23 LGRAYLRLGRYDEALAAYEKALRLD-----PDNADA---LLDLAEALLAAGDTEEAEELLERALAL--------DPDNPE 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1408474924 335 QLNNLALLCQNQGKFEEVERHYARALSIyealgGPHDPNVAKTKNNLASA 384
Cdd:COG4235    87 ALYLLGLAAFQQGDYAEAIAAWQKLLAL-----LPADAPARLLEASIAEA 131
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 204-362 1.93e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 1.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATDLLHDALQIreqtl 283
Cdd:COG5010     9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL----- 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1408474924 284 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKFEEVERHYARALSI 362
Cdd:COG5010    84 ---DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 21-148 7.18e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 45.70  E-value: 7.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924  21 EELVRQTRQVVKGLEALRAEHRGLAGHLAEALAAqgpaagLELLEEKQQVVSHSLEAIELGLGEAQ-VLLALSAHVGALE 99
Cdd:COG1196   228 ELLLLKLRELEAELEELEAELEELEAELEELEAE------LAELEAELEELRLELEELELELEEAQaEEYELLAELARLE 301

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1408474924 100 AEKQRLRAQARRLAQENAWLREELEETQRRLRASEEAVAQLEEEKSHLE 148
Cdd:COG1196   302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
21-148 9.13e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.29  E-value: 9.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924   21 EELVRQTRQVVKGLEALRAEHRGLAGHLAEALAAQgpaagLELLEEKQQVVSHSLEAIELGLGEAQVLLALSAHvgALEA 100
Cdd:COG4913    312 ERLEARLDALREELDELEAQIRGNGGDRLEQLERE-----IERLERELEERERRRARLEALLAALGLPLPASAE--EFAA 384

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1408474924  101 EKQRLRAQARRLAQENAWLREELEETQRRLRASEEAVAQLEEEKSHLE 148
Cdd:COG4913    385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 303-404 1.34e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.52  E-value: 1.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 303 KRGRYREAEPLCQRALEirekvLGTDHPDVAKQLNNLALLCQNQGKFEEVERHYARALSIYealggPHDPNVAKTKNNLA 382
Cdd:COG1729     5 KAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALLKLG 74

                          90       100
                  ....*....|....*....|..
gi 1408474924 383 SAYLKQNKYQQAEELYKEILHR 404
Cdd:COG1729    75 LSYLELGDYDKARATLEELIKK 96
TPR_1 pfam00515
Tetratricopeptide repeat;
291-323 1.50e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.94  E-value: 1.50e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1408474924 291 AATLNNLAVLYGKRGRYREAEPLCQRALEIREK 323
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 22-148 1.50e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 44.66  E-value: 1.50e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924   22 ELVRQTRQVVKGLEALRAEHrgLAGHLAEALAAQGPAAG-LELLEEKQQVVSHSLEAIELGLGEAQ--------VLLALS 92
Cdd:TIGR02168  217 ELKAELRELELALLVLRLEE--LREELEELQEELKEAEEeLEELTAELQELEEKLEELRLEVSELEeeieelqkELYALA 294

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1408474924   93 AHVGALEAEKQRLRAQARRLAQENAWLREELEETQRRLRASEEAVAQLEEEKSHLE 148
Cdd:TIGR02168  295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 204-320 1.66e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 1.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDLerssghchPDVATMLNILALVYRDQNKYKEATDLLHDALQireqtL 283
Cdd:COG4235    14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALA-----L 80

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1408474924 284 GPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEI 320
Cdd:COG4235    81 DPDNPEA---LYLLGLAAFQQGDYAEAIAAWQKLLAL 114
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 21-148 2.49e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.77  E-value: 2.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924  21 EELVRQTRQVVKGLEALRAEHRGLAGHLAEALAAQGpAAGLELLEEKQQVVSHSLEAIELG---LGEAQVLLALSAHVGA 97
Cdd:COG1196   256 EELEAELAELEAELEELRLELEELELELEEAQAEEY-ELLAELARLEQDIARLEERRRELEerlEELEEELAELEEELEE 334

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1408474924  98 LEAEKQRLRAQARRLAQENAWLREELEETQRRLRASEEAVAQLEEEKSHLE 148
Cdd:COG1196   335 LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
34-185 3.83e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 43.37  E-value: 3.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924   34 LEALRAEHRGLAGHLAEALAAqgpAAGLELLEEKQQVVSHSLEAIELGLGEAQVLLALSAHVGALEAEKQRLRAQARRLA 113
Cdd:COG4913    612 LAALEAELAELEEELAEAEER---LEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLA 688

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1408474924  114 QenawLREELEETQRRLRASEEAVAQLEEEKSHLEflGQLRQydppAESQQPESPPRRDSLGSLFPSEEEER 185
Cdd:COG4913    689 A----LEEQLEELEAELEELEEELDELKGEIGRLE--KELEQ----AEEELDELQDRLEAAEDLARLELRAL 750
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 291-323 5.93e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 5.93e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1408474924  291 AATLNNLAVLYGKRGRYREAEPLCQRALEIREK 323
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
21-150 6.08e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.59  E-value: 6.08e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924   21 EELVRQTRQVVKGLEALRAEHRGLAGHLAEALAAQGPAAGLELLEEKqqvvshsLEAIELGLGEaqvLLALSAHVGALEA 100
Cdd:COG4913    630 EERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAE-------LERLDASSDD---LAALEEQLEELEA 699

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1408474924  101 EKQRLRAQARRLAQENAWLREELEETQRRLRASEEAVAQLEEEKSHLEFL 150
Cdd:COG4913    700 ELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA 749
TPR_10 pfam13374
Tetratricopeptide repeat;
332-373 7.82e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 37.10  E-value: 7.82e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1408474924 332 VAKQLNNLALLCQNQGKFEEVERHYARALSIYEALGGPHDPN 373
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
204-361 8.80e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.05  E-value: 8.80e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATDLLHDALQIReqtl 283
Cdd:COG4785    70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALEL--------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD---- 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 284 gPEHpavAATLNNLAVLYGKRGRYREAEPLCQRALEIREK----------VLGTDHPDVAKQL--NNLALLCQNQGKFEE 351
Cdd:COG4785   138 -PDY---AYAYLNRGIALYYLGRYELAIADLEKALELDPNdperalwlylAERKLDPEKALALllEDWATAYLLQGDTEE 213

                         170
                  ....*....|
gi 1408474924 352 VERHYARALS 361
Cdd:COG4785   214 ARELFKLALA 223
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 21-148 9.19e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.85  E-value: 9.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924  21 EELVRQTRQVVKGLEALRAEHRGLAGHLAEALAAQGPAAG--LELLEEKQQVVSHSLEAIELGLGEAQVLLALSAHVGAL 98
Cdd:COG1196   333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAelAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1408474924  99 EAEKQRLRAQARRLAQENAWLREELEETQRRLRASEEAVAQLEEEKSHLE 148
Cdd:COG1196   413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
TPR_7 pfam13176
Tetratricopeptide repeat;
293-326 9.93e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 36.75  E-value: 9.93e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1408474924 293 TLNNLAVLYGKRGRYREAEPLCQRALEIREKVLG 326
Cdd:pfam13176   1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 204-359 1.38e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 40.76  E-value: 1.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQAlEDLERSSGHCHPDVATMLnILALVYRDQNKYKEATDLLHDALQIREQTL 283
Cdd:pfam17874  37 LARGLATFVLGEAYLCLGDLDAALQAMREA-EALARRADSPHVTLWALL-QQGEILRAQGRLHQALETYQQALQLARDHG 114

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1408474924 284 GPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVlgtdHPDVAKQLNN-LALLCQNQGKFEEVERHYARA 359
Cdd:pfam17874 115 LQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQW----EPDAAVDAYVlLARIALAQGELEEALTLLRRA 187
TPR_10 pfam13374
Tetratricopeptide repeat;
207-247 1.50e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.33  E-value: 1.50e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1408474924 207 LRTLHNLVIQYASQGRYEVAVPLCRQALEDLERSSGHCHPD 247
Cdd:pfam13374   2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 204-321 1.76e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.48  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 204 PARLRTLHNLVIQYASQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATDLLHDALQireqtl 283
Cdd:COG2956   175 PDCARALLLLAELYLEQGDYEEAIAALERALEQ--------DPDYLPALPRLAELYEKLGDPEEALELLRKALE------ 240

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1408474924 284 gpEHPAVAAtLNNLAVLYGKRGRYREAEPLCQRALEIR 321
Cdd:COG2956   241 --LDPSDDL-LLALADLLERKEGLEAALALLERQLRRH 275
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 259-384 2.48e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.66  E-value: 2.48e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 259 YRDQNKYKEATDLLHDALQireqtLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEirekvLGTDHPDVAKQLNN 338
Cdd:COG1729     3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAPDALLK 72

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1408474924 339 LALLCQNQGKFEEVERHYARALSIYealggPHDPNVAKTKNNLASA 384
Cdd:COG1729    73 LGLSYLELGDYDKARATLEELIKKY-----PDSEAAKEARARLARL 113
TPR_1 pfam00515
Tetratricopeptide repeat;
375-402 3.21e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 3.21e-03
                          10        20
                  ....*....|....*....|....*...
gi 1408474924 375 AKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
292-402 3.45e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.13  E-value: 3.45e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924 292 ATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKFEEVERHYARALSIyealggphD 371
Cdd:COG4785    32 AAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL--------D 103

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1408474924 372 PNVAKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:COG4785   104 PDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 97-164 4.24e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 39.93  E-value: 4.24e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1408474924   97 ALEAEKQRLRAQARRLAQENAWLREELEETQRRLRASEEAVAQLEEEKSHLEF-LGQLRQYDPPAESQQ 164
Cdd:PRK11448   146 ALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAqLEQLQEKAAETSQER 214
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 375-402 8.45e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.96  E-value: 8.45e-03
                           10        20
                   ....*....|....*....|....*...
gi 1408474924  375 AKTKNNLASAYLKQNKYQQAEELYKEIL 402
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKAL 28
TPR_10 pfam13374
Tetratricopeptide repeat;
374-407 8.75e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 34.01  E-value: 8.75e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1408474924 374 VAKTKNNLASAYLKQNKYQQAEELYKEIL--HREAL 407
Cdd:pfam13374   1 TASSLNNLANALRAQGRYDEAEELLEEALaiRERVL 36
TPR_1 pfam00515
Tetratricopeptide repeat;
333-364 9.31e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 33.93  E-value: 9.31e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1408474924 333 AKQLNNLALLCQNQGKFEEVERHYARALSIYE 364
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 21-148 9.83e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 38.90  E-value: 9.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1408474924   21 EELVRQTRQVVKGLEALRAEHRGLAGHLAEALAAQGPAAG--------LELLEEKQQVVSHSLEAIELGLGEAQVLLALS 92
Cdd:TIGR02169  871 EELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAqiekkrkrLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1408474924   93 AHVGALEAEKQRLRAQARRLAQENAWLREELEETQRRLRASEEAVAQLEEEKSHLE 148
Cdd:TIGR02169  951 LSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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