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Conserved domains on  [gi|1373952574|ref|XP_024401525|]
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homeobox-leucine zipper protein HOX20-like [Physcomitrium patens]

Protein Classification

homeobox-leucine zipper protein( domain architecture ID 11079011)

homeobox-leucine zipper protein is a transcription factor that may function in plant development and/or in stress adaptation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
92-145 1.89e-19

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 80.62  E-value: 1.89e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1373952574  92 KKRRLSF--DQVRSLERSFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 145
Cdd:pfam00046   1 RRKRTTFtpEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HALZ pfam02183
Homeobox associated leucine zipper;
147-187 4.73e-12

Homeobox associated leucine zipper;


:

Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 59.84  E-value: 4.73e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1373952574 147 KQLERDYEMLNSGYIKLKADFETALREKDVLKAEVQRLSGK 187
Cdd:pfam02183   1 KQLERDYDVLKASYDALKSDFDSLKKENQKLQAELQELKEK 41
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
92-145 1.89e-19

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 80.62  E-value: 1.89e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1373952574  92 KKRRLSF--DQVRSLERSFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 145
Cdd:pfam00046   1 RRKRTTFtpEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 92-145 4.11e-18

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 77.29  E-value: 4.11e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1373952574   92 KKRRLSF--DQVRSLERSFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 145
Cdd:smart00389   2 RRKRTSFtpEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 92-148 1.27e-16

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 73.05  E-value: 1.27e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1373952574  92 KKRRLSF--DQVRSLERSFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQ 148
Cdd:cd00086     1 RRKRTRFtpEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HALZ pfam02183
Homeobox associated leucine zipper;
147-187 4.73e-12

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 59.84  E-value: 4.73e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1373952574 147 KQLERDYEMLNSGYIKLKADFETALREKDVLKAEVQRLSGK 187
Cdd:pfam02183   1 KQLERDYDVLKASYDALKSDFDSLKKENQKLQAELQELKEK 41
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
87-148 2.39e-09

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 55.52  E-value: 2.39e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1373952574  87 SQPVEKKRRLSFDQVRSLERSFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQ 148
Cdd:COG5576    49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
92-145 1.89e-19

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 80.62  E-value: 1.89e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1373952574  92 KKRRLSF--DQVRSLERSFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 145
Cdd:pfam00046   1 RRKRTTFtpEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 92-145 4.11e-18

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 77.29  E-value: 4.11e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1373952574   92 KKRRLSF--DQVRSLERSFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWK 145
Cdd:smart00389   2 RRKRTSFtpEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 92-148 1.27e-16

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 73.05  E-value: 1.27e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1373952574  92 KKRRLSF--DQVRSLERSFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQ 148
Cdd:cd00086     1 RRKRTRFtpEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HALZ pfam02183
Homeobox associated leucine zipper;
147-187 4.73e-12

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 59.84  E-value: 4.73e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1373952574 147 KQLERDYEMLNSGYIKLKADFETALREKDVLKAEVQRLSGK 187
Cdd:pfam02183   1 KQLERDYDVLKASYDALKSDFDSLKKENQKLQAELQELKEK 41
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
87-148 2.39e-09

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 55.52  E-value: 2.39e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1373952574  87 SQPVEKKRRLSFDQVRSLERSFEVENKLEPERKMQLAKELGLQPRQVAVWFQNRRARWKTKQ 148
Cdd:COG5576    49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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