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Conserved domains on  [gi|1334653198|ref|XP_023588275|]
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atos homolog protein A isoform X6 [Trichechus manatus latirostris]

Protein Classification

DUF4210 and Chromosome_seg domain-containing protein( domain architecture ID 10621592)

DUF4210 and Chromosome_seg domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Chromosome_seg pfam13889
Chromosome segregation during meiosis; The proteins come from eukaryotes, plants and animals, ...
 858-915 3.38e-21

Chromosome segregation during meiosis; The proteins come from eukaryotes, plants and animals, and are necessary for chromosome segregation during meiosis.


:

Pssm-ID: 464021  Cd Length: 55  Bit Score: 87.64  E-value: 3.38e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1334653198 858 LLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGaayELKSYTESPTNPQFSPR 915
Cdd:pfam13889   1 VLRYAIHLRFCCPKSGRFYLYKDIRVVFANRVPDGDEG---KLRVETETPSNPKYSPY 55
DUF4210 pfam13915
Domain of unknown function (DUF4210); This short domain is found in fungi, plants and animals, ...
 718-775 9.19e-14

Domain of unknown function (DUF4210); This short domain is found in fungi, plants and animals, and the proteins appear to be necessary for chromosome segregation during meiosis.


:

Pssm-ID: 404751  Cd Length: 66  Bit Score: 66.92  E-value: 9.19e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1334653198 718 LLGNFEESVLNYRLD--PLGTVDgFTAEVGASGIF-------CPTHLTLPVEVSFYSVSDDNAPSPY 775
Cdd:pfam13915   1 LVGSYEESLLNGRMSttPSKPLD-FVAEIGVLGKGkcksslrCPPHLTLPFPAVFYSYGDIDKGSPY 66
 
Name Accession Description Interval E-value
Chromosome_seg pfam13889
Chromosome segregation during meiosis; The proteins come from eukaryotes, plants and animals, ...
 858-915 3.38e-21

Chromosome segregation during meiosis; The proteins come from eukaryotes, plants and animals, and are necessary for chromosome segregation during meiosis.


Pssm-ID: 464021  Cd Length: 55  Bit Score: 87.64  E-value: 3.38e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1334653198 858 LLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGaayELKSYTESPTNPQFSPR 915
Cdd:pfam13889   1 VLRYAIHLRFCCPKSGRFYLYKDIRVVFANRVPDGDEG---KLRVETETPSNPKYSPY 55
DUF4210 pfam13915
Domain of unknown function (DUF4210); This short domain is found in fungi, plants and animals, ...
 718-775 9.19e-14

Domain of unknown function (DUF4210); This short domain is found in fungi, plants and animals, and the proteins appear to be necessary for chromosome segregation during meiosis.


Pssm-ID: 404751  Cd Length: 66  Bit Score: 66.92  E-value: 9.19e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1334653198 718 LLGNFEESVLNYRLD--PLGTVDgFTAEVGASGIF-------CPTHLTLPVEVSFYSVSDDNAPSPY 775
Cdd:pfam13915   1 LVGSYEESLLNGRMSttPSKPLD-FVAEIGVLGKGkcksslrCPPHLTLPFPAVFYSYGDIDKGSPY 66
 
Name Accession Description Interval E-value
Chromosome_seg pfam13889
Chromosome segregation during meiosis; The proteins come from eukaryotes, plants and animals, ...
 858-915 3.38e-21

Chromosome segregation during meiosis; The proteins come from eukaryotes, plants and animals, and are necessary for chromosome segregation during meiosis.


Pssm-ID: 464021  Cd Length: 55  Bit Score: 87.64  E-value: 3.38e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1334653198 858 LLRYLIHLRFQSSKSGKIYLHRDVRLLFSRKSMEVDSGaayELKSYTESPTNPQFSPR 915
Cdd:pfam13889   1 VLRYAIHLRFCCPKSGRFYLYKDIRVVFANRVPDGDEG---KLRVETETPSNPKYSPY 55
DUF4210 pfam13915
Domain of unknown function (DUF4210); This short domain is found in fungi, plants and animals, ...
 718-775 9.19e-14

Domain of unknown function (DUF4210); This short domain is found in fungi, plants and animals, and the proteins appear to be necessary for chromosome segregation during meiosis.


Pssm-ID: 404751  Cd Length: 66  Bit Score: 66.92  E-value: 9.19e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1334653198 718 LLGNFEESVLNYRLD--PLGTVDgFTAEVGASGIF-------CPTHLTLPVEVSFYSVSDDNAPSPY 775
Cdd:pfam13915   1 LVGSYEESLLNGRMSttPSKPLD-FVAEIGVLGKGkcksslrCPPHLTLPFPAVFYSYGDIDKGSPY 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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