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Conserved domains on  [gi|1333171261|ref|XP_023516752|]
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protein RKD1-like [Cucurbita pepo subsp. pepo]

Protein Classification

RWP-RK domain-containing protein( domain architecture ID 10488929)

RWP-RK domain-containing protein may function as a transcription factor in plants and algae, and may be involved in a variety of cellular processes, including cell differentiation, development, and stress response; similar to Arabidopsis thaliana protein RKD1-5

Gene Ontology:  GO:0006355|GO:0003700|GO:0003677
PubMed:  24987011

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RWP-RK pfam02042
RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the ...
 140-188 7.30e-23

RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the presumed domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development.


:

Pssm-ID: 460427  Cd Length: 49  Bit Score: 89.10  E-value: 7.30e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1333171261 140 TLSREAISEYFYMPITQAAKQLNVGLTLLKKRCRELGIRRWPHRKLMSL 188
Cdd:pfam02042   1 SITLEDLSQYFHLPIKEAAKELGVSLTTLKRICRRLGIPRWPHRKLKSL 49
 
Name Accession Description Interval E-value
RWP-RK pfam02042
RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the ...
 140-188 7.30e-23

RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the presumed domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development.


Pssm-ID: 460427  Cd Length: 49  Bit Score: 89.10  E-value: 7.30e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1333171261 140 TLSREAISEYFYMPITQAAKQLNVGLTLLKKRCRELGIRRWPHRKLMSL 188
Cdd:pfam02042   1 SITLEDLSQYFHLPIKEAAKELGVSLTTLKRICRRLGIPRWPHRKLKSL 49
 
Name Accession Description Interval E-value
RWP-RK pfam02042
RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the ...
 140-188 7.30e-23

RWP-RK domain; This domain is named RWP-RK after a conserved motif at the C terminus of the presumed domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development.


Pssm-ID: 460427  Cd Length: 49  Bit Score: 89.10  E-value: 7.30e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 1333171261 140 TLSREAISEYFYMPITQAAKQLNVGLTLLKKRCRELGIRRWPHRKLMSL 188
Cdd:pfam02042   1 SITLEDLSQYFHLPIKEAAKELGVSLTTLKRICRRLGIPRWPHRKLKSL 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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