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Conserved domains on  [gi|1315014018|ref|XP_023156182|]
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uncharacterized protein LOC111589565 [Zea mays]

Protein Classification

transposase family protein( domain architecture ID 229435)

transposase family protein might bind to the end of a transposon and catalyze the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism

Gene Ontology:  GO:0004803
PubMed:  20615441

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DDE_Tnp_1_3 super family cl46860
Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. ...
 134-270 4.43e-75

Transposase DDE domain; Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contains three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.


The actual alignment was detected with superfamily member pfam04827:

Pssm-ID: 481200  Cd Length: 205  Bit Score: 227.56  E-value: 4.43e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315014018 134 DEYLRTPNDNDTARLLALGEERGFPGMLGSLDCMHWRWKNCLSAYQGQYS-GHYHTPTIILEAVASHDLWIWHAFFGLPG 212
Cdd:pfam04827   1 ASYLRAPTAKNVDRLLHIGESRGFPGMLGSLDCMHWKWKNCPTAWKGQYTrGDSKSPTIILEAVASYDLWIWHAFFGCPG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1315014018 213 SLNDINVLHRSPLFAKLSNGEAPQVNYNINGHNYSMGYYLADGIYPSWATLVKTILEP 270
Cdd:pfam04827  81 SNNDINVLNQSPIFDDILQGTAPRVRYTVNGRQYNMGYYLADGIYPEWATFVKSIRLP 138
 
Name Accession Description Interval E-value
Plant_tran pfam04827
Plant transposon protein; This family contains plant transposases which are putative members ...
 134-270 4.43e-75

Plant transposon protein; This family contains plant transposases which are putative members of the PIF / Ping-Pong family.


Pssm-ID: 203098  Cd Length: 205  Bit Score: 227.56  E-value: 4.43e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315014018 134 DEYLRTPNDNDTARLLALGEERGFPGMLGSLDCMHWRWKNCLSAYQGQYS-GHYHTPTIILEAVASHDLWIWHAFFGLPG 212
Cdd:pfam04827   1 ASYLRAPTAKNVDRLLHIGESRGFPGMLGSLDCMHWKWKNCPTAWKGQYTrGDSKSPTIILEAVASYDLWIWHAFFGCPG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1315014018 213 SLNDINVLHRSPLFAKLSNGEAPQVNYNINGHNYSMGYYLADGIYPSWATLVKTILEP 270
Cdd:pfam04827  81 SNNDINVLNQSPIFDDILQGTAPRVRYTVNGRQYNMGYYLADGIYPEWATFVKSIRLP 138
 
Name Accession Description Interval E-value
Plant_tran pfam04827
Plant transposon protein; This family contains plant transposases which are putative members ...
 134-270 4.43e-75

Plant transposon protein; This family contains plant transposases which are putative members of the PIF / Ping-Pong family.


Pssm-ID: 203098  Cd Length: 205  Bit Score: 227.56  E-value: 4.43e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1315014018 134 DEYLRTPNDNDTARLLALGEERGFPGMLGSLDCMHWRWKNCLSAYQGQYS-GHYHTPTIILEAVASHDLWIWHAFFGLPG 212
Cdd:pfam04827   1 ASYLRAPTAKNVDRLLHIGESRGFPGMLGSLDCMHWKWKNCPTAWKGQYTrGDSKSPTIILEAVASYDLWIWHAFFGCPG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1315014018 213 SLNDINVLHRSPLFAKLSNGEAPQVNYNINGHNYSMGYYLADGIYPSWATLVKTILEP 270
Cdd:pfam04827  81 SNNDINVLNQSPIFDDILQGTAPRVRYTVNGRQYNMGYYLADGIYPEWATFVKSIRLP 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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