LURP-one-related/scramblase family protein similar to Arabidopsis thaliana protein LURP16, which might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors
LURP-one-related; The structure of this family has been solved. It comprises a 12-stranded ...
2-190
7.81e-34
LURP-one-related; The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens.
The actual alignment was detected with superfamily member pfam04525:
Pssm-ID: 470445 Cd Length: 186 Bit Score: 119.09 E-value: 7.81e-34
LURP-one-related; The structure of this family has been solved. It comprises a 12-stranded ...
2-190
7.81e-34
LURP-one-related; The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens.
Pssm-ID: 398294 Cd Length: 186 Bit Score: 119.09 E-value: 7.81e-34
LURP-one-related; The structure of this family has been solved. It comprises a 12-stranded ...
2-190
7.81e-34
LURP-one-related; The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens.
Pssm-ID: 398294 Cd Length: 186 Bit Score: 119.09 E-value: 7.81e-34
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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This image shows a graphical summary of conserved domains identified on the query sequence.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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Concise Display shows only the best scoring domain model, in each hit category listed below except non-specific hits, for each region on the query sequence.
(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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(labeled illustration) Four types of hits can be shown, as available,
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specific hits meet or exceed a domain-specific e-value threshold
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