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Conserved domains on  [gi|1280988636|ref|XP_022977817|]
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uncharacterized protein LOC111478005 isoform X1 [Cucurbita maxima]

Protein Classification

VQ motif-containing protein( domain architecture ID 10529371)

VQ motif-containing protein similar to Arabidopsis thaliana protein MKS1, a regulator of plant defense response

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VQ pfam05678
VQ motif; This short motif is found in a variety of plant proteins. These proteins vary ...
 51-75 2.39e-06

VQ motif; This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Swiss:Q9LDH1. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.).


:

Pssm-ID: 461711  Cd Length: 28  Bit Score: 42.37  E-value: 2.39e-06
                          10        20
                  ....*....|....*....|....*
gi 1280988636  51 PTTLLNASTANFRDLVQQFTGFHAA 75
Cdd:pfam05678   3 PPTVIHTDPSNFRALVQRLTGAPSA 27
 
Name Accession Description Interval E-value
VQ pfam05678
VQ motif; This short motif is found in a variety of plant proteins. These proteins vary ...
 51-75 2.39e-06

VQ motif; This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Swiss:Q9LDH1. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.).


Pssm-ID: 461711  Cd Length: 28  Bit Score: 42.37  E-value: 2.39e-06
                          10        20
                  ....*....|....*....|....*
gi 1280988636  51 PTTLLNASTANFRDLVQQFTGFHAA 75
Cdd:pfam05678   3 PPTVIHTDPSNFRALVQRLTGAPSA 27
 
Name Accession Description Interval E-value
VQ pfam05678
VQ motif; This short motif is found in a variety of plant proteins. These proteins vary ...
 51-75 2.39e-06

VQ motif; This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Swiss:Q9LDH1. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.).


Pssm-ID: 461711  Cd Length: 28  Bit Score: 42.37  E-value: 2.39e-06
                          10        20
                  ....*....|....*....|....*
gi 1280988636  51 PTTLLNASTANFRDLVQQFTGFHAA 75
Cdd:pfam05678   3 PPTVIHTDPSNFRALVQRLTGAPSA 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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