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Conserved domains on  [gi|1279770035|ref|XP_022937601|]
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tetratricopeptide repeat protein 1-like [Cucurbita moschata]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11469168)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
79-247 2.69e-19

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 83.81  E-value: 2.69e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  79 SEDEIKEKALAEANIAKM---AGNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKAC 155
Cdd:COG4785    58 LAAERIDRALALPDLAQLyyeRGVAYDSLGDYDLAIADFDQALELDPDLAEA-------YNNRGLAYLLLGDYDAALEDF 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035 156 SKAIELNPAYVKALSRRAEAREKLEHFEEAINDMKKILELDSSNDQAkkAIRRLEPLAEQKREKMKEEMIgKLKEMGNSL 235
Cdd:COG4785   131 DRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPER--ALWLYLAERKLDPEKALALLL-EDWATAYLL 207

                         170
                  ....*....|..
gi 1279770035 236 LGRFGMSVDNFK 247
Cdd:COG4785   208 QGDTEEARELFK 219
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
79-247 2.69e-19

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 83.81  E-value: 2.69e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  79 SEDEIKEKALAEANIAKM---AGNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKAC 155
Cdd:COG4785    58 LAAERIDRALALPDLAQLyyeRGVAYDSLGDYDLAIADFDQALELDPDLAEA-------YNNRGLAYLLLGDYDAALEDF 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035 156 SKAIELNPAYVKALSRRAEAREKLEHFEEAINDMKKILELDSSNDQAkkAIRRLEPLAEQKREKMKEEMIgKLKEMGNSL 235
Cdd:COG4785   131 DRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPER--ALWLYLAERKLDPEKALALLL-EDWATAYLL 207

                         170
                  ....*....|..
gi 1279770035 236 LGRFGMSVDNFK 247
Cdd:COG4785   208 QGDTEEARELFK 219
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 10-222 7.93e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 70.78  E-value: 7.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  10 EDEVPSPPKASASNKNATDSSGGASTSNVSKDPSdgyeTASDGELGDSGDERQEhtdqhsEQEAQIATPSEDEIKEKALA 89
Cdd:TIGR00990  60 QQQRESKPKISKKERRKRKQAEKETEGKTEEKKS----TAPKNAPVEPADELPE------IDESSVANLSEEERKKYAAK 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  90 eaniAKMAGNKLFGEGKYEEALLEYDRALTISPDmpsavelrSICQANRGACFLKQEKYDDTVKACSKAIELNPAYVKAL 169
Cdd:TIGR00990 130 ----LKEKGNKAYRNKDFNKAIKLYSKAIECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKAL 197

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1279770035 170 SRRAEAREKLEHFEEAINDMKKILELDSSND-QAKKAIRRLepLAEQKREKMKE 222
Cdd:TIGR00990 198 NRRANAYDGLGKYADALLDLTASCIIDGFRNeQSAQAVERL--LKKFAESKAKE 249
TPR_1 pfam00515
Tetratricopeptide repeat;
137-163 3.41e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.10  E-value: 3.41e-05
                          10        20
                  ....*....|....*....|....*..
gi 1279770035 137 NRGACFLKQEKYDDTVKACSKAIELNP 163
Cdd:pfam00515   6 NLGNAYFKLGKYDEALEYYEKALELNP 32
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 146-208 8.20e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 43.24  E-value: 8.20e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1279770035 146 EKYDDTVKACSKAIELNPAYVKALSRRAEAREKLEHFEEAINDMKKILELDSSndQAKKAIRR 208
Cdd:PLN03088   16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS--LAKAYLRK 76
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 137-163 9.61e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 9.61e-05
                           10        20
                   ....*....|....*....|....*..
gi 1279770035  137 NRGACFLKQEKYDDTVKACSKAIELNP 163
Cdd:smart00028   6 NLGNAYLKLGDYDEALEYYEKALELDP 32
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 99-220 3.63e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.07  E-value: 3.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  99 NKLFGEGKYEEALLEYDRALTISPDMPSAVELrsicqanRGACFLKQEKYDDTVKACSKAIELNP--AYVKALS--RRAE 174
Cdd:cd24142     8 EELLDQGNFELALKFLQRALELEPNNVEALEL-------LGEILLELGDVEEAREVLLRAIELDPdgGYEKYLYlgQLSG 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1279770035 175 AREKLEHFEEAINDMKKILEldssndQAKKAIRRLEPLAEQKREKM 220
Cdd:cd24142    81 GEEALQYYEKGIEILEEELQ------ALQAASAEAEEEAEELKRKL 120
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
79-247 2.69e-19

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 83.81  E-value: 2.69e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  79 SEDEIKEKALAEANIAKM---AGNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKAC 155
Cdd:COG4785    58 LAAERIDRALALPDLAQLyyeRGVAYDSLGDYDLAIADFDQALELDPDLAEA-------YNNRGLAYLLLGDYDAALEDF 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035 156 SKAIELNPAYVKALSRRAEAREKLEHFEEAINDMKKILELDSSNDQAkkAIRRLEPLAEQKREKMKEEMIgKLKEMGNSL 235
Cdd:COG4785   131 DRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPER--ALWLYLAERKLDPEKALALLL-EDWATAYLL 207

                         170
                  ....*....|..
gi 1279770035 236 LGRFGMSVDNFK 247
Cdd:COG4785   208 QGDTEEARELFK 219
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 70-202 2.15e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 78.50  E-value: 2.15e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  70 EQEAQIATPSEDEIKEKALAEANIAKMAGNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYD 149
Cdd:COG3914    57 AALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEA-------LFNLGNLLLALGRLE 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1279770035 150 DTVKACSKAIELNPAYVKALSRRAEAREKLEHFEEAINDMKKILELDSSNDQA 202
Cdd:COG3914   130 EALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA 182
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 98-202 2.77e-16

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 78.11  E-value: 2.77e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  98 GNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPAYVKALSRRAEARE 177
Cdd:COG3914   119 GNLLLALGRLEEALAALRRALALNPDFAEA-------YLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQ 191

                          90       100
                  ....*....|....*....|....*
gi 1279770035 178 KLEHFEEAINDMKKILELDSSNDQA 202
Cdd:COG3914   192 DLGRLEEAIAAYRRALELDPDNADA 216
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
98-202 9.50e-16

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 74.27  E-value: 9.50e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  98 GNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPAYVKALSRRAEARE 177
Cdd:COG0457    15 GLAYRRLGRYEEAIEDYEKALELDPDDAEA-------LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                          90       100
                  ....*....|....*....|....*
gi 1279770035 178 KLEHFEEAINDMKKILELDSSNDQA 202
Cdd:COG0457    88 ALGRYEEALEDYDKALELDPDDAEA 112
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
85-202 3.00e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.12  E-value: 3.00e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  85 EKALA----EANIAKMAGNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIE 160
Cdd:COG0457    32 EKALEldpdDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA-------LNNLGLALQALGRYEEALEDYDKALE 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1279770035 161 LNPAYVKALSRRAEAREKLEHFEEAINDMKKILELDSSNDQA 202
Cdd:COG0457   105 LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADA 146
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 10-222 7.93e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 70.78  E-value: 7.93e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  10 EDEVPSPPKASASNKNATDSSGGASTSNVSKDPSdgyeTASDGELGDSGDERQEhtdqhsEQEAQIATPSEDEIKEKALA 89
Cdd:TIGR00990  60 QQQRESKPKISKKERRKRKQAEKETEGKTEEKKS----TAPKNAPVEPADELPE------IDESSVANLSEEERKKYAAK 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  90 eaniAKMAGNKLFGEGKYEEALLEYDRALTISPDmpsavelrSICQANRGACFLKQEKYDDTVKACSKAIELNPAYVKAL 169
Cdd:TIGR00990 130 ----LKEKGNKAYRNKDFNKAIKLYSKAIECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKAL 197

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1279770035 170 SRRAEAREKLEHFEEAINDMKKILELDSSND-QAKKAIRRLepLAEQKREKMKE 222
Cdd:TIGR00990 198 NRRANAYDGLGKYADALLDLTASCIIDGFRNeQSAQAVERL--LKKFAESKAKE 249
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
98-223 3.36e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 67.34  E-value: 3.36e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  98 GNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPAYVKALSRRAEARE 177
Cdd:COG0457    83 GLALQALGRYEEALEDYDKALELDPDDAEA-------LYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1279770035 178 KLEHFEEAINDMKKILELDSSNDQAKKAIRRLEPLAEQKREKMKEE 223
Cdd:COG0457   156 KLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLL 201
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 96-210 5.40e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 61.56  E-value: 5.40e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  96 MAGNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPAYVKALSRRAEA 175
Cdd:COG4235    22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADA-------LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1279770035 176 REKLEHFEEAINDMKKILELDSSNDQAKKAIRRLE 210
Cdd:COG4235    95 AFQQGDYAEAIAAWQKLLALLPADAPARLLEASIA 129
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 87-196 2.88e-11

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 60.36  E-value: 2.88e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  87 ALAEANIAKMAGNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPAYV 166
Cdd:COG5010    50 LAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL-------YYNLALLYSRSGDKDEAKEYYEKALALSPDNP 122

                          90       100       110
                  ....*....|....*....|....*....|
gi 1279770035 167 KALSRRAEAREKLEHFEEAINDMKKILELD 196
Cdd:COG5010   123 NAYSNLAALLLSLGQDDEAKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
105-198 1.93e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 56.33  E-value: 1.93e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035 105 GKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDtVKACSKAIELNPAYVKALSRRAEAREKLEHFEE 184
Cdd:COG3063     6 GDLEEAEEYYEKALELDPDNADA-------LNNLGLLLLEQGRYDE-AIALEKALKLDPNNAEALLNLAELLLELGDYDE 77

                          90
                  ....*....|....
gi 1279770035 185 AINDMKKILELDSS 198
Cdd:COG3063    78 ALAYLERALELDPS 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 81-201 3.11e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.97  E-value: 3.11e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  81 DEIKEKALAEANIAKMAGNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIE 160
Cdd:COG2956   134 ERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA-------LLLLAELYLEQGDYEEAIAALERALE 206

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1279770035 161 LNPAYVKALSRRAEAREKLEHFEEAINDMKKILELDSSNDQ 201
Cdd:COG2956   207 QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 85-209 5.81e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 56.35  E-value: 5.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  85 EKALAEANIAKMAGNklfgEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPA 164
Cdd:COG4783     2 ACAEALYALAQALLL----AGDYDEAEALLEKALELDPDNPEA-------FALLGEILLQLGDLDEAIVLLHEALELDPD 70

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1279770035 165 YVKALSRRAEAREKLEHFEEAINDMKKILELDSSNDQAKKAIRRL 209
Cdd:COG4783    71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 96-199 9.18e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.58  E-value: 9.18e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  96 MAGNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPAYVKALSRRAEA 175
Cdd:COG4783    43 LLGEILLQLGDLDEAIVLLHEALELDPDEPEA-------RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115

                          90       100
                  ....*....|....*....|....
gi 1279770035 176 REKLEHFEEAINDMKKILELDSSN 199
Cdd:COG4783   116 YRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
137-202 1.38e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.94  E-value: 1.38e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1279770035 137 NRGACFLKQEKYDDTVKACSKAIELNPAYVKALSRRAEAREKLEHFEEAINDMKKILELDSSNDQA 202
Cdd:COG0457    13 NLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 104-228 8.34e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 8.34e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035 104 EGKYEEALLEYDRALTISPDmpsavelRSICQANRGACFLKQEKYDDTVKACSKAIELNPAYVKALSRRAEAREKLEHFE 183
Cdd:COG2956   123 EGDWEKAIEVLERLLKLGPE-------NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYE 195

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1279770035 184 EAINDMKKILELDSSN--------------DQAKKAIRRLEPLAEQKREKMKEEMIGKL 228
Cdd:COG2956   196 EAIAALERALEQDPDYlpalprlaelyeklGDPEEALELLRKALELDPSDDLLLALADL 254
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 109-202 4.29e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 50.77  E-value: 4.29e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035 109 EALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPAYVKALSRRAEAREKLEHFEEAIND 188
Cdd:COG4235     1 EAIARLRQALAANPNDAEG-------WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL 73

                          90
                  ....*....|....
gi 1279770035 189 MKKILELDSSNDQA 202
Cdd:COG4235    74 LERALALDPDNPEA 87
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 98-191 6.35e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.07  E-value: 6.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  98 GNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPAYVKALS------R 171
Cdd:COG3914   153 GEALRRLGRLEEAIAALRRALELDPDNAEA-------LNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSnllfalR 225

                          90       100
                  ....*....|....*....|
gi 1279770035 172 RAEAREKLEHFEEAINDMKK 191
Cdd:COG3914   226 QACDWEVYDRFEELLAALAR 245
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 100-210 2.47e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.06  E-value: 2.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035 100 KLFGEGKYEEALLEYDRALTISPDMPSAVElrsiCQANRGACFLKQEKYDDTVKACSKAIELNPAYVK---ALSRRAEAR 176
Cdd:COG1729     2 ALLKAGDYDEAIAAFKAFLKRYPNSPLAPD----ALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSY 77

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1279770035 177 EKLEHFEEAINDMKKILELDSSNDQAKKAIRRLE 210
Cdd:COG1729    78 LELGDYDKARATLEELIKKYPDSEAAKEARARLA 111
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 96-209 7.33e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 7.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  96 MAGNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPAYVKALSRRAEA 175
Cdd:COG2956    13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEA-------HLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQD 85

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1279770035 176 REKLEHFEEAINDMKKILELDSSNDQAKKAIRRL 209
Cdd:COG2956    86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAEI 119
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 98-202 1.16e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 1.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  98 GNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPAYVKALSRRAEARE 177
Cdd:COG2956    49 GNLYRRRGEYDRAIRIHQKLLERDPDRAEA-------LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYE 121

                          90       100
                  ....*....|....*....|....*
gi 1279770035 178 KLEHFEEAINDMKKILELDSSNDQA 202
Cdd:COG2956   122 QEGDWEKAIEVLERLLKLGPENAHA 146
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 87-218 6.54e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 6.54e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  87 ALAEANIAKMAGNKLFGEGKYEEALLEYDRALTISPDMPSAVELRSICQANRGACFLKQEKYDDTVKACSKAIELNPAYV 166
Cdd:COG5010     9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNP 88

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1279770035 167 KALSRRAEAREKLEHFEEAINDMKKILELDSSNDQAKKAIRRLEPLAEQKRE 218
Cdd:COG5010    89 ELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 105-215 9.79e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 9.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035 105 GKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPAYVKALSRRAEAREKLEHFEE 184
Cdd:COG2956    90 GLLDRAEELLEKLLELDPDDAEA-------LRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 1279770035 185 AINDMKKILELDSSN--------------DQAKKAIRRLEPLAEQ 215
Cdd:COG2956   163 AIEALEKALKLDPDCarallllaelyleqGDYEEAIAALERALEQ 207
TPR_1 pfam00515
Tetratricopeptide repeat;
137-163 3.41e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.10  E-value: 3.41e-05
                          10        20
                  ....*....|....*....|....*..
gi 1279770035 137 NRGACFLKQEKYDDTVKACSKAIELNP 163
Cdd:pfam00515   6 NLGNAYFKLGKYDEALEYYEKALELNP 32
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
98-223 5.93e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.46  E-value: 5.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  98 GNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIELNPAYVKALsRRAEARE 177
Cdd:COG0457   117 GLALLELGRYDEAIEAYERALELDPDDADA-------LYNLGIALEKLGRYEEALELLEKLEAAALAALLAA-ALGEAAL 188

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1279770035 178 KLEHFEEAINDMKKILELDSSNDQAKKAIRRLEPLAEQKREKMKEE 223
Cdd:COG0457   189 ALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALR 234
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 146-208 8.20e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 43.24  E-value: 8.20e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1279770035 146 EKYDDTVKACSKAIELNPAYVKALSRRAEAREKLEHFEEAINDMKKILELDSSndQAKKAIRR 208
Cdd:PLN03088   16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS--LAKAYLRK 76
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 137-163 9.61e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 9.61e-05
                           10        20
                   ....*....|....*....|....*..
gi 1279770035  137 NRGACFLKQEKYDDTVKACSKAIELNP 163
Cdd:smart00028   6 NLGNAYLKLGDYDEALEYYEKALELDP 32
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
141-236 1.39e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.77  E-value: 1.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035 141 CFLKQEKYDDTVKACSKAIELNPAYVKALSRRAEAREKLEHFEEAInDMKKILELDSSNDQAKKAIRRLepLAEQKREKM 220
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAEL--LLELGDYDE 77

                          90
                  ....*....|....*.
gi 1279770035 221 KEEMIGKLKEMGNSLL 236
Cdd:COG3063    78 ALAYLERALELDPSAL 93
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 84-239 2.58e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.99  E-value: 2.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  84 KEKALAEANIAKM---AGNKLFGEGKYEEALLEYDRALTISPDMPSAVELRSICQANRGacflkqeKYDDTVKACSKAIE 160
Cdd:TIGR02917 115 GKTLLDDEGAAELlalRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN-------RFDEARALIDEVLT 187

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1279770035 161 LNPAYVKALSRRAEAREKLEHFEEAINDMKKILELDSSNDQAKKAiRRLEPLAEQKREKMKEEMIGKLKEMGNSLLGRF 239
Cdd:TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLA-LATILIEAGEFEEAEKHADALLKKAPNSPLAHY 265
TPR_11 pfam13414
TPR repeat;
98-145 3.08e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.45  E-value: 3.08e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1279770035  98 GNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQ 145
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEA-------YYNLGLAYYKL 41
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 99-220 3.63e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 41.07  E-value: 3.63e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  99 NKLFGEGKYEEALLEYDRALTISPDMPSAVELrsicqanRGACFLKQEKYDDTVKACSKAIELNP--AYVKALS--RRAE 174
Cdd:cd24142     8 EELLDQGNFELALKFLQRALELEPNNVEALEL-------LGEILLELGDVEEAREVLLRAIELDPdgGYEKYLYlgQLSG 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1279770035 175 AREKLEHFEEAINDMKKILEldssndQAKKAIRRLEPLAEQKREKM 220
Cdd:cd24142    81 GEEALQYYEKGIEILEEELQ------ALQAASAEAEEEAEELKRKL 120
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 69-248 3.86e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 41.61  E-value: 3.86e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  69 SEQEAQIATPSEDEIKEKALAEANIAKMAGNKLFGEgkYEEALLEYDRALTISPDM----PSAVELRSIcqanRGACFLK 144
Cdd:TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ--YYLGKGQLKKALAILNEAadaaPDSPEAWLM----LGRAQLA 613

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035 145 QEKYDDTVKACSKAIELNPAYVKALSRRAEAREKLEHFEEAINDMKKILELDSSNDQAKKAIRRLEPLAEQKREKMKEEM 224
Cdd:TIGR02917 614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAK 693

                         170       180
                  ....*....|....*....|....*...
gi 1279770035 225 IGKLKE----MGNSLLGRFGMSVDNFKA 248
Cdd:TIGR02917 694 SLQKQHpkaaLGFELEGDLYLRQKDYPA 721
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 107-224 7.99e-04

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 40.16  E-value: 7.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035 107 YEEALLEYDRALTISPDMPSAVELRSicQANrgacfLKQEKYDDTVKACSKAIELNPAYVKALSRRAEAREKLEHFEEAI 186
Cdd:PLN03088   18 FALAVDLYTQAIDLDPNNAELYADRA--QAN-----IKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1279770035 187 NDMKKILELDSSNDQAKKAIRRLEplaeqkrEKMKEEM 224
Cdd:PLN03088   91 AALEKGASLAPGDSRFTKLIKECD-------EKIAEEE 121
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 85-165 1.13e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 1.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  85 EKALA----EANIAKMAGNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIE 160
Cdd:COG4783    62 HEALEldpdEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA-------YLRLARAYRALGRPDEAIAALEKALE 134


                  ....*
gi 1279770035 161 LNPAY 165
Cdd:COG4783   135 LDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 85-163 3.97e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 36.86  E-value: 3.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  85 EKALA----EANIAKMAGNKLFGEGKYEEALLEYDRALTISPDMPSAvelrsicQANRGACFLKQEKYDDTVKACSKAIE 160
Cdd:COG5010    78 EQALQldpnNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA-------YSNLAALLLSLGQDDEAKAALQRALG 150


                  ...
gi 1279770035 161 LNP 163
Cdd:COG5010   151 TSP 153
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 84-206 9.32e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 37.37  E-value: 9.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  84 KEKALAEANIAKMAGNKL---------FGEGKYEEALLEYDRALTISPDMPSAVelrsicqANRGACFLKQEKYDDTVKA 154
Cdd:TIGR02917 449 KALAAAKKLEKKQPDNASlhnllgaiyLGKGDLAKAREAFEKALSIEPDFFPAA-------ANLARIDIQEGNPDDAIQR 521

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1279770035 155 CSKAIELNPAYVKALSRRAEAREKLEHFEEAINDMKKILELDSSNDQAKKAI 206
Cdd:TIGR02917 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALAL 573
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 96-165 9.86e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 33.85  E-value: 9.86e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1279770035  96 MAGNKLFGEGKYEEALLEYDRALTISPDMPSAVELRSicqaNRGACFLKQEKYDDTVKACSKAIELNPAY 165
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPDAAAALL----LLGLAALRQGRLAEAAAAYRAALRAAPGD 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
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