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Conserved domains on  [gi|1216266616|ref|XP_021617504|]
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nuclear transcription factor Y subunit A-1 [Manihot esculenta]

Protein Classification

CCAAT-binding transcription factor( domain architecture ID 10649995)

CCAAT-binding transcription factor similar to nuclear transcription factor Y subunit alpha, which is a component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' box motif found in the promoters of its target genes

Gene Ontology:  GO:0003700|GO:0006355|GO:0016602
PubMed:  1549471

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
166-227 4.68e-35

CCAAT-Binding transcription Factor;


:

Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 122.14  E-value: 4.68e-35
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1216266616  166 MEEEPVYVNAKQFHGILRRRQARAKAELEKKAIKARKPYLHESRHQHAMRRARGCGGRFLST 227
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62
 
Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
166-227 4.68e-35

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 122.14  E-value: 4.68e-35
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1216266616  166 MEEEPVYVNAKQFHGILRRRQARAKAELEKKAIKARKPYLHESRHQHAMRRARGCGGRFLST 227
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
169-224 7.83e-34

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 118.83  E-value: 7.83e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1216266616 169 EPVYVNAKQFHGILRRRQARAKAELEKKAIKARKPYLHESRHQHAMRRARGCGGRF 224
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56
HAP2 COG5224
CCAAT-binding factor, subunit B [Transcription];
168-254 7.84e-12

CCAAT-binding factor, subunit B [Transcription];


Pssm-ID: 227549 [Multi-domain]  Cd Length: 248  Bit Score: 64.44  E-value: 7.84e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216266616 168 EEPVYVNAKQFHGILRRRQARAKaeLEKKAIKARKPYLHESRHQHAMRRARGCGGRFLSTK--KPQNNSTDHTADKDVNS 245
Cdd:COG5224   158 FQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASeiDPLNLTGNTQDSMIIGQ 235


                  ....*....
gi 1216266616 246 GANPSQQSA 254
Cdd:COG5224   236 QTYPSHGSS 244
 
Name Accession Description Interval E-value
CBF smart00521
CCAAT-Binding transcription Factor;
166-227 4.68e-35

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 122.14  E-value: 4.68e-35
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1216266616  166 MEEEPVYVNAKQFHGILRRRQARAKAELEKKAIKARKPYLHESRHQHAMRRARGCGGRFLST 227
Cdd:smart00521   1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT 62
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
169-224 7.83e-34

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 118.83  E-value: 7.83e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1216266616 169 EPVYVNAKQFHGILRRRQARAKAELEKKAIKARKPYLHESRHQHAMRRARGCGGRF 224
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56
HAP2 COG5224
CCAAT-binding factor, subunit B [Transcription];
168-254 7.84e-12

CCAAT-binding factor, subunit B [Transcription];


Pssm-ID: 227549 [Multi-domain]  Cd Length: 248  Bit Score: 64.44  E-value: 7.84e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1216266616 168 EEPVYVNAKQFHGILRRRQARAKaeLEKKAIKARKPYLHESRHQHAMRRARGCGGRFLSTK--KPQNNSTDHTADKDVNS 245
Cdd:COG5224   158 FQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASeiDPLNLTGNTQDSMIIGQ 235


                  ....*....
gi 1216266616 246 GANPSQQSA 254
Cdd:COG5224   236 QTYPSHGSS 244
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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