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Conserved domains on  [gi|1162467725|ref|XP_020407077|]
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uncharacterized protein LOC100279529 isoform X1 [Zea mays]

Protein Classification

Kelch repeat-containing protein( domain architecture ID 11459646)

Kelch repeat-containing protein, member of a superfamily of proteins with diverse functions

CATH:  2.120.10.80
Gene Ontology:  GO:0005515
PubMed:  10603472|31442578|24959344
SCOP:  3000448

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
85-344 6.37e-24

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 102.16  E-value: 6.37e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  85 STEGDKPAPRFDHAAAMVGSKMVVFGGDSGQSLLDDTKILSLDKLTWDSVAPkvrPPLNGRSlklrpcrGHCLVSWGKNV 164
Cdd:COG3055     4 SSLPDLPTPRSEAAAALLDGKVYVAGGLSGGSASNSFEVYDPATNTWSELAP---LPGPPRH-------HAAAVAQDGKL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 165 ILVGG-----KSDQPYDkiSVWTFNTESELWShmeAKGDIPVSRSGHTVIRAGPVLILFGGEDAKGkKLHDLHMFDLKSL 239
Cdd:COG3055    74 YVFGGftganPSSTPLN--DVYVYDPATNTWT---KLAPMPTPRGGATALLLDGKIYVVGGWDDGG-NVAWVEVYDPATG 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 240 TWLPLnykGAGPSPRSNHVAALYDDRVLLIFGGQSKSKTLNdihaldfetmVWSRVKthgHHPSPRAGCCGALCGTKWYI 319
Cdd:COG3055   148 TWTQL---APLPTPRDHLAAAVLPDGKILVIGGRNGSGFSN----------TWTTLA---PLPTARAGHAAAVLGGKILV 211

                         250       260
                  ....*....|....*....|....*
gi 1162467725 320 AGGgsKKKRHPETWVFDVLESRWSV 344
Cdd:COG3055   212 FGG--ESGFSDEVEAYDPATNTWTA 234
SMC_prok_B super family cl37069
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 547-695 6.88e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


The actual alignment was detected with superfamily member TIGR02168:

Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 49.67  E-value: 6.88e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  547 HQDARVAALVRRNVALEEQLSAALASKDEAEKNLSLV---IDS----KDGLEKRLAEKDREVEALREKATGLE------- 612
Cdd:TIGR02168  306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELeekLEElkeeLESLEAELEELEAELEELESRLEELEeqletlr 385

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  613 ----LAQEEANSLSNTV-------HADNVRLEREVAFLKAVMDETQK-ELHSTRGVLAGERARAFQLQVEVFHLKQRLQT 680
Cdd:TIGR02168  386 skvaQLELQIASLNNEIerlearlERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQEELERLEEALEE 465

                          170
                   ....*....|....*
gi 1162467725  681 MEGRSPAAPRKPQNA 695
Cdd:TIGR02168  466 LREELEEAEQALDAA 480
 
Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
85-344 6.37e-24

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 102.16  E-value: 6.37e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  85 STEGDKPAPRFDHAAAMVGSKMVVFGGDSGQSLLDDTKILSLDKLTWDSVAPkvrPPLNGRSlklrpcrGHCLVSWGKNV 164
Cdd:COG3055     4 SSLPDLPTPRSEAAAALLDGKVYVAGGLSGGSASNSFEVYDPATNTWSELAP---LPGPPRH-------HAAAVAQDGKL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 165 ILVGG-----KSDQPYDkiSVWTFNTESELWShmeAKGDIPVSRSGHTVIRAGPVLILFGGEDAKGkKLHDLHMFDLKSL 239
Cdd:COG3055    74 YVFGGftganPSSTPLN--DVYVYDPATNTWT---KLAPMPTPRGGATALLLDGKIYVVGGWDDGG-NVAWVEVYDPATG 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 240 TWLPLnykGAGPSPRSNHVAALYDDRVLLIFGGQSKSKTLNdihaldfetmVWSRVKthgHHPSPRAGCCGALCGTKWYI 319
Cdd:COG3055   148 TWTQL---APLPTPRDHLAAAVLPDGKILVIGGRNGSGFSN----------TWTTLA---PLPTARAGHAAAVLGGKILV 211

                         250       260
                  ....*....|....*....|....*
gi 1162467725 320 AGGgsKKKRHPETWVFDVLESRWSV 344
Cdd:COG3055   212 FGG--ESGFSDEVEAYDPATNTWTA 234
PLN02193 PLN02193
nitrile-specifier protein
 54-322 6.23e-15

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 77.69  E-value: 6.23e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  54 GRADDL-----AWRCSSDTFDLNGrdfesseNWAVLSTEGDKPAPRFDHAAAMVGSKMVVFGGD--SGQSLLDDTKILSL 126
Cdd:PLN02193  128 GRSTDVlhslgAYISLPSTPKLLG-------KWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEftPNQPIDKHLYVFDL 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 127 DKLTWdSVAPKVR--PPLNgrslklrpCRGHCLVSWGKNVILVGGK-SDQPYDkiSVWTFNTESELWSHMEAKGDIPVSR 203
Cdd:PLN02193  201 ETRTW-SISPATGdvPHLS--------CLGVRMVSIGSTLYVFGGRdASRQYN--GFYSFDTTTNEWKLLTPVEEGPTPR 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 204 SGHTVIRAGPVLILFGGEDAKgKKLHDLHMFDLKSLTWLPLNYKGAGPSPRSNHVAALYDDRVLLIFGGQSKSktLNDIH 283
Cdd:PLN02193  270 SFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE--VDDVH 346

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1162467725 284 ALDFETMVWSRVKTHGHHPSPRAGCCGALCGTKWYIAGG 322
Cdd:PLN02193  347 YYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 547-695 6.88e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 49.67  E-value: 6.88e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  547 HQDARVAALVRRNVALEEQLSAALASKDEAEKNLSLV---IDS----KDGLEKRLAEKDREVEALREKATGLE------- 612
Cdd:TIGR02168  306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELeekLEElkeeLESLEAELEELEAELEELESRLEELEeqletlr 385

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  613 ----LAQEEANSLSNTV-------HADNVRLEREVAFLKAVMDETQK-ELHSTRGVLAGERARAFQLQVEVFHLKQRLQT 680
Cdd:TIGR02168  386 skvaQLELQIASLNNEIerlearlERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQEELERLEEALEE 465

                          170
                   ....*....|....*
gi 1162467725  681 MEGRSPAAPRKPQNA 695
Cdd:TIGR02168  466 LREELEEAEQALDAA 480
Kelch_4 pfam13418
Galactose oxidase, central domain;
253-298 9.71e-06

Galactose oxidase, central domain;


Pssm-ID: 433191 [Multi-domain]  Cd Length: 49  Bit Score: 42.98  E-value: 9.71e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1162467725 253 PRSNHVAALYDDRVLLIFGGQS-KSKTLNDIHALDFETMVWSRVKTH 298
Cdd:pfam13418   1 PRAYHTSTSIPDDTIYLFGGEGeDGTLLSDLWVFDLSTNEWTRLGSL 47
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 549-680 6.41e-05

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 44.92  E-value: 6.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 549 DARVAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALREKATGLELAQ------EEANSLS 622
Cdd:COG1579    16 DSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgnvrnnKEYEALQ 95

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1162467725 623 NTVHAdnvrLEREVAFLKAVMDETQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQT 680
Cdd:COG1579    96 KEIES----LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
CCCAP pfam15964
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ...
 565-682 1.45e-04

Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.


Pssm-ID: 435040 [Multi-domain]  Cd Length: 703  Bit Score: 45.28  E-value: 1.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 565 QLSAALASKDEAEKNLSlviDSKDGLEKRLAEKDREVEALREKATGLELAQEEANSlsntvhaDNVRLEREVAFLKAVMD 644
Cdd:pfam15964 457 QLNQTKMKKDEAEKEHR---EYRTKTGRQLEIKDQEIEKLGLELSESKQRLEQAQQ-------DAARAREECLKLTELLG 526

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1162467725 645 ETQKELHSTR--------GVLAGERARAFQLQVEVFHLKQRLQTME 682
Cdd:pfam15964 527 ESEHQLHLTRlekesiqqSFSNEAKAQALQAQQREQELTQKMQQME 572
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
562-661 9.78e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 42.36  E-value: 9.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 562 LEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALrEKATGL------ELAQEEANSLSNTVHADNVRLERE 635
Cdd:PRK03918  389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL-KKAKGKcpvcgrELTEEHRKELLEEYTAELKRIEKE 467

                          90       100
                  ....*....|....*....|....*.
gi 1162467725 636 VAFLKAVMDETQKELHSTRGVLAGER 661
Cdd:PRK03918  468 LKEIEEKERKLRKELRELEKVLKKES 493
 
Name Accession Description Interval E-value
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
85-344 6.37e-24

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 102.16  E-value: 6.37e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  85 STEGDKPAPRFDHAAAMVGSKMVVFGGDSGQSLLDDTKILSLDKLTWDSVAPkvrPPLNGRSlklrpcrGHCLVSWGKNV 164
Cdd:COG3055     4 SSLPDLPTPRSEAAAALLDGKVYVAGGLSGGSASNSFEVYDPATNTWSELAP---LPGPPRH-------HAAAVAQDGKL 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 165 ILVGG-----KSDQPYDkiSVWTFNTESELWShmeAKGDIPVSRSGHTVIRAGPVLILFGGEDAKGkKLHDLHMFDLKSL 239
Cdd:COG3055    74 YVFGGftganPSSTPLN--DVYVYDPATNTWT---KLAPMPTPRGGATALLLDGKIYVVGGWDDGG-NVAWVEVYDPATG 147

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 240 TWLPLnykGAGPSPRSNHVAALYDDRVLLIFGGQSKSKTLNdihaldfetmVWSRVKthgHHPSPRAGCCGALCGTKWYI 319
Cdd:COG3055   148 TWTQL---APLPTPRDHLAAAVLPDGKILVIGGRNGSGFSN----------TWTTLA---PLPTARAGHAAAVLGGKILV 211

                         250       260
                  ....*....|....*....|....*
gi 1162467725 320 AGGgsKKKRHPETWVFDVLESRWSV 344
Cdd:COG3055   212 FGG--ESGFSDEVEAYDPATNTWTA 234
PLN02193 PLN02193
nitrile-specifier protein
 54-322 6.23e-15

nitrile-specifier protein


Pssm-ID: 177844 [Multi-domain]  Cd Length: 470  Bit Score: 77.69  E-value: 6.23e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  54 GRADDL-----AWRCSSDTFDLNGrdfesseNWAVLSTEGDKPAPRFDHAAAMVGSKMVVFGGD--SGQSLLDDTKILSL 126
Cdd:PLN02193  128 GRSTDVlhslgAYISLPSTPKLLG-------KWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEftPNQPIDKHLYVFDL 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 127 DKLTWdSVAPKVR--PPLNgrslklrpCRGHCLVSWGKNVILVGGK-SDQPYDkiSVWTFNTESELWSHMEAKGDIPVSR 203
Cdd:PLN02193  201 ETRTW-SISPATGdvPHLS--------CLGVRMVSIGSTLYVFGGRdASRQYN--GFYSFDTTTNEWKLLTPVEEGPTPR 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 204 SGHTVIRAGPVLILFGGEDAKgKKLHDLHMFDLKSLTWLPLNYKGAGPSPRSNHVAALYDDRVLLIFGGQSKSktLNDIH 283
Cdd:PLN02193  270 SFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE--VDDVH 346

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 1162467725 284 ALDFETMVWSRVKTHGHHPSPRAGCCGALCGTKWYIAGG 322
Cdd:PLN02193  347 YYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGG 385
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
85-275 3.51e-12

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 67.49  E-value: 3.51e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  85 STEGDKPAPRFDHAAAMVGSKMVVFGGDSGQSLLDDTKILSLDKLTWDSVAPkvrPPlngrslklRPCRGHCLVSWGKNV 164
Cdd:COG3055   103 TKLAPMPTPRGGATALLLDGKIYVVGGWDDGGNVAWVEVYDPATGTWTQLAP---LP--------TPRDHLAAAVLPDGK 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 165 ILVGGKSDqpydkisvwtFNTESELWShmeAKGDIPVSRSGHTVIRAGPVLILFGGEDAKgkkLHDLHMFDLKSLTWLPL 244
Cdd:COG3055   172 ILVIGGRN----------GSGFSNTWT---TLAPLPTARAGHAAAVLGGKILVFGGESGF---SDEVEAYDPATNTWTAL 235

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1162467725 245 nykGAGPSPRSNHVAALYDDRVLLIfGGQSK 275
Cdd:COG3055   236 ---GELPTPRHGHAAVLTDGKVYVI-GGETK 262
PLN02153 PLN02153
epithiospecifier protein
 81-322 6.63e-11

epithiospecifier protein


Pssm-ID: 177814 [Multi-domain]  Cd Length: 341  Bit Score: 64.24  E-value: 6.63e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  81 WAVLSTEGDK-PAPRFDHAAAMVGSKMVVFGGD--SGQSLLDDTKILSLDKLTWDSVAPKVRPPLNGrslklrpCRGHCL 157
Cdd:PLN02153    9 WIKVEQKGGKgPGPRCSHGIAVVGDKLYSFGGElkPNEHIDKDLYVFDFNTHTWSIAPANGDVPRIS-------CLGVRM 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 158 VSWGKNVILVGGKSDQ-------PYDKI-SVWTFNTEselwshMEAKGDiPVSRSGHTVIRAGPVLILFGGEDAKG---- 225
Cdd:PLN02153   82 VAVGTKLYIFGGRDEKrefsdfySYDTVkNEWTFLTK------LDEEGG-PEARTFHSMASDENHVYVFGGVSKGGlmkt 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 226 -KKLHDLHMFDLKSLTWLPL-----NYK---GAGPSPRSNHVAALYDDRVLLIFGGQSKSKTlNDIHALDFETMVWSRVK 296
Cdd:PLN02153  155 pERFRTIEAYNIADGKWVQLpdpgeNFEkrgGAGFAVVQGKIWVVYGFATSILPGGKSDYES-NAVQFFDPASGKWTEVE 233

                         250       260
                  ....*....|....*....|....*.
gi 1162467725 297 THGHHPSPRAGCCGALCGTKWYIAGG 322
Cdd:PLN02153  234 TTGAKPSARSVFAHAVVGKYIIIFGG 259
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
85-236 7.81e-10

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 60.55  E-value: 7.81e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  85 STEGDKPAPRFDHAAAMVGS-KMVVFGGDSGQSLLDdtkilsldklTWDSVAPKVRPplngrslklrpcRGHCLVSWGKN 163
Cdd:COG3055   150 TQLAPLPTPRDHLAAAVLPDgKILVIGGRNGSGFSN----------TWTTLAPLPTA------------RAGHAAAVLGG 207

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1162467725 164 VILVGGKSDQPYDKisVWTFNTESELWShmeAKGDIPVSRSGHTVIRAGPVLILFGGEDAKGKKLHDLHMFDL 236
Cdd:COG3055   208 KILVFGGESGFSDE--VEAYDPATNTWT---ALGELPTPRHGHAAVLTDGKVYVIGGETKPGVRTPLVTSAEV 275
PLN02153 PLN02153
epithiospecifier protein
 241-343 2.48e-09

epithiospecifier protein


Pssm-ID: 177814 [Multi-domain]  Cd Length: 341  Bit Score: 59.61  E-value: 2.48e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 241 WLPLNYKGA-GPSPRSNHVAALYDDRvLLIFGGQSKSKTL--NDIHALDFETMVWSRVKTHGHhpSPRAGCCGA---LCG 314
Cdd:PLN02153    9 WIKVEQKGGkGPGPRCSHGIAVVGDK-LYSFGGELKPNEHidKDLYVFDFNTHTWSIAPANGD--VPRISCLGVrmvAVG 85

                          90       100
                  ....*....|....*....|....*....
gi 1162467725 315 TKWYIAGGGSKKKRHPETWVFDVLESRWS 343
Cdd:PLN02153   86 TKLYIFGGRDEKREFSDFYSYDTVKNEWT 114
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 547-695 6.88e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 49.67  E-value: 6.88e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  547 HQDARVAALVRRNVALEEQLSAALASKDEAEKNLSLV---IDS----KDGLEKRLAEKDREVEALREKATGLE------- 612
Cdd:TIGR02168  306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELeekLEElkeeLESLEAELEELEAELEELESRLEELEeqletlr 385

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  613 ----LAQEEANSLSNTV-------HADNVRLEREVAFLKAVMDETQK-ELHSTRGVLAGERARAFQLQVEVFHLKQRLQT 680
Cdd:TIGR02168  386 skvaQLELQIASLNNEIerlearlERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEELQEELERLEEALEE 465

                          170
                   ....*....|....*
gi 1162467725  681 MEGRSPAAPRKPQNA 695
Cdd:TIGR02168  466 LREELEEAEQALDAA 480
Kelch_4 pfam13418
Galactose oxidase, central domain;
253-298 9.71e-06

Galactose oxidase, central domain;


Pssm-ID: 433191 [Multi-domain]  Cd Length: 49  Bit Score: 42.98  E-value: 9.71e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1162467725 253 PRSNHVAALYDDRVLLIFGGQS-KSKTLNDIHALDFETMVWSRVKTH 298
Cdd:pfam13418   1 PRAYHTSTSIPDDTIYLFGGEGeDGTLLSDLWVFDLSTNEWTRLGSL 47
PLN02153 PLN02153
epithiospecifier protein
 74-273 9.93e-06

epithiospecifier protein


Pssm-ID: 177814 [Multi-domain]  Cd Length: 341  Bit Score: 48.06  E-value: 9.93e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  74 DFES----SENWAVLST--EGDKPAPRFDHAAAMVGSKMVVFGGDSGQSLLDDTKILSLDKLTWDSVAPKVRPPLNGRSL 147
Cdd:PLN02153  102 DFYSydtvKNEWTFLTKldEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 148 KLRPCRGHcLVSWGK--------NVILVGGKSDqpYDKISVWTFNTESELWSHMEAKGDIPVSRS--GHTVIraGPVLIL 217
Cdd:PLN02153  182 EKRGGAGF-AVVQGKiwvvygfaTSILPGGKSD--YESNAVQFFDPASGKWTEVETTGAKPSARSvfAHAVV--GKYIII 256

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1162467725 218 FGGE---DAK-----GKKLHDLHMFDLKSLTWLPLNYKGAGPSPR---SNHVAALYDDRVLLIFGGQ 273
Cdd:PLN02153  257 FGGEvwpDLKghlgpGTLSNEGYALDTETLVWEKLGECGEPAMPRgwtAYTTATVYGKNGLLMHGGK 323
Kelch_3 pfam13415
Galactose oxidase, central domain;
212-262 1.59e-05

Galactose oxidase, central domain;


Pssm-ID: 433188 [Multi-domain]  Cd Length: 49  Bit Score: 42.66  E-value: 1.59e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1162467725 212 GPVLILFGGEDAKG-KKLHDLHMFDLKSLTWLPLnykGAGPSPRSNHVAALY 262
Cdd:pfam13415   1 GDKLYIFGGLGFDGqTRLNDLYVYDLDTNTWTQI---GDLPPPRSGHSATYI 49
Kelch_4 pfam13418
Galactose oxidase, central domain;
203-241 1.72e-05

Galactose oxidase, central domain;


Pssm-ID: 433191 [Multi-domain]  Cd Length: 49  Bit Score: 42.60  E-value: 1.72e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1162467725 203 RSGHTVIRAGP-VLILFGGEDAKGKKLHDLHMFDLKSLTW 241
Cdd:pfam13418   2 RAYHTSTSIPDdTIYLFGGEGEDGTLLSDLWVFDLSTNEW 41
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 549-680 6.41e-05

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 44.92  E-value: 6.41e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 549 DARVAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALREKATGLELAQ------EEANSLS 622
Cdd:COG1579    16 DSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgnvrnnKEYEALQ 95

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1162467725 623 NTVHAdnvrLEREVAFLKAVMDETQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQT 680
Cdd:COG1579    96 KEIES----LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE 149
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
550-690 9.55e-05

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.68  E-value: 9.55e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  550 ARVAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKDGLEK--RLAEKDREVEALREKATGLELAQEEANSLSNTVha 627
Cdd:COG4913    610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaEYSWDEIDVASAEREIAELEAELERLDASSDDL-- 687

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1162467725  628 dnVRLEREVAFLKAVMDETQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQTMEGRSPAAPR 690
Cdd:COG4913    688 --AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELR 748
CCCAP pfam15964
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ...
 565-682 1.45e-04

Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.


Pssm-ID: 435040 [Multi-domain]  Cd Length: 703  Bit Score: 45.28  E-value: 1.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 565 QLSAALASKDEAEKNLSlviDSKDGLEKRLAEKDREVEALREKATGLELAQEEANSlsntvhaDNVRLEREVAFLKAVMD 644
Cdd:pfam15964 457 QLNQTKMKKDEAEKEHR---EYRTKTGRQLEIKDQEIEKLGLELSESKQRLEQAQQ-------DAARAREECLKLTELLG 526

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1162467725 645 ETQKELHSTR--------GVLAGERARAFQLQVEVFHLKQRLQTME 682
Cdd:pfam15964 527 ESEHQLHLTRlekesiqqSFSNEAKAQALQAQQREQELTQKMQQME 572
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
561-684 1.73e-04

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 44.51  E-value: 1.73e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 561 ALEEQLSAALASKDEAEKNLslvidskDGLEKRLAEKDREVEALREKatgLELAQEEANSLSNTVHADNVRLERevafLK 640
Cdd:COG4372    28 ALSEQLRKALFELDKLQEEL-------EQLREELEQAREELEQLEEE---LEQARSELEQLEEELEELNEQLQA----AQ 93

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1162467725 641 AVMDETQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQTMEGR 684
Cdd:COG4372    94 AELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQ 137
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 549-682 2.59e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.54  E-value: 2.59e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 549 DARVAALVRRNvaLEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALREKatgLELAQEEANSLSNTV--- 625
Cdd:COG1196   226 EAELLLLKLRE--LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELE---LEEAQAEEYELLAELarl 300

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1162467725 626 HADNVRLEREVAFLKAVMDETQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQTME 682
Cdd:COG1196   301 EQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE 357
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
469-658 3.12e-04

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 44.08  E-value: 3.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 469 SLRRQFRQeeecssLAQKLQKPIDDDRYK---------DAADECSEHQPPSATNPKPRNDARRSSPEV-VVDAKARRLlg 538
Cdd:COG2433   347 AYKNKFER------VEKKVPPDVDRDEVKarvirglsiEEALEELIEKELPEEEPEAEREKEHEERELtEEEEEIRRL-- 418

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 539 rsssdmnnhqDARVAALVRRNVALEEQLsaalASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALREKATGL--ELAQE 616
Cdd:COG2433   419 ----------EEQVERLEAEVEELEAEL----EEKDERIERLERELSEARSEERREIRKDREISRLDREIERLerELEEE 484

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1162467725 617 EANslsntvhadNVRLEREVAFLKAVMdetqKELHSTRGVLA 658
Cdd:COG2433   485 RER---------IEELKRKLERLKELW----KLEHSGELVPV 513
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
549-681 3.30e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 43.85  E-value: 3.30e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 549 DARVAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAE--KDREVEALREKATGLE--LAQEEANSLSNt 624
Cdd:COG3206   211 SEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEllQSPVIQQLRAQLAELEaeLAELSARYTPN- 289

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1162467725 625 vHADNVRLEREVAFLKAVMD-ETQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQTM 681
Cdd:COG3206   290 -HPDVIALRAQIAALRAQLQqEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 93-136 4.22e-04

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 38.36  E-value: 4.22e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1162467725  93 PRFDHAAAMVGSKMVVFGGDSGQSLLDDTKILSLDKLTWDSVAP 136
Cdd:pfam01344   1 RRSGAGVVVVGGKIYVIGGFDGNQSLNSVEVYDPETNTWSKLPS 44
Kelch_1 pfam01344
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 253-297 4.89e-04

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 396078 [Multi-domain]  Cd Length: 46  Bit Score: 38.36  E-value: 4.89e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1162467725 253 PRSNHVAALYDDRvLLIFGGQSKSKTLNDIHALDFETMVWSRVKT 297
Cdd:pfam01344   1 RRSGAGVVVVGGK-IYVIGGFDGNQSLNSVEVYDPETNTWSKLPS 44
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 548-679 5.03e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.39  E-value: 5.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 548 QDARVAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALREKATGLELAQEEANSLSNTVHA 627
Cdd:COG1196   342 LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1162467725 628 DNVRLEREVAFLKAVMDETQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQ 679
Cdd:COG1196   422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 550-682 6.22e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 43.00  E-value: 6.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 550 ARVAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALREKATGLELAQEEANS-LSNTVHAD 628
Cdd:COG1196   295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEaLLEAEAEL 374

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1162467725 629 NVRLEREVAFLKAVMDETQKElhstrgvlAGERARAFQLQVEVFHLKQRLQTME 682
Cdd:COG1196   375 AEAEEELEELAEELLEALRAA--------AELAAQLEELEEAEEALLERLERLE 420
NanM COG3055
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
72-169 7.47e-04

N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442289 [Multi-domain]  Cd Length: 277  Bit Score: 42.07  E-value: 7.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  72 GRDFESSENWavLSTEGDKPAPRFDHAAAMVGSKMVVFGGDSGQSllddTKILSLDKLT--WDSVapkvrPPLNgrslkl 149
Cdd:COG3055   177 GRNGSGFSNT--WTTLAPLPTARAGHAAAVLGGKILVFGGESGFS----DEVEAYDPATntWTAL-----GELP------ 239

                          90       100
                  ....*....|....*....|
gi 1162467725 150 RPCRGHCLVSWGKNVILVGG 169
Cdd:COG3055   240 TPRHGHAAVLTDGKVYVIGG 259
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
561-682 9.49e-04

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 42.20  E-value: 9.49e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 561 ALEEQLSAALASKDEAEKNLslvidskDGLEKRLAEKDREVEALREKatgLELAQEEANSLSNTVHadnvRLEREVAFLK 640
Cdd:COG4372    63 QLEEELEQARSELEQLEEEL-------EELNEQLQAAQAELAQAQEE---LESLQEEAEELQEELE----ELQKERQDLE 128

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1162467725 641 AVMDETQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQTME 682
Cdd:COG4372   129 QQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALE 170
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
562-661 9.78e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 42.36  E-value: 9.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 562 LEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALrEKATGL------ELAQEEANSLSNTVHADNVRLERE 635
Cdd:PRK03918  389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL-KKAKGKcpvcgrELTEEHRKELLEEYTAELKRIEKE 467

                          90       100
                  ....*....|....*....|....*.
gi 1162467725 636 VAFLKAVMDETQKELHSTRGVLAGER 661
Cdd:PRK03918  468 LKEIEEKERKLRKELRELEKVLKKES 493
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
551-684 1.15e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.21  E-value: 1.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  551 RVAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEKD-REVEALREKATGLELAQEEANSLSNTVHADN 629
Cdd:COG4913    289 RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERERRRARLEALL 368

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1162467725  630 VRLEREVAFLKAVMDETQKELHSTRGVLAGERARAFQLQVEVF-----------HLKQRLQTMEGR 684
Cdd:COG4913    369 AALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEaalrdlrrelrELEAEIASLERR 434
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 547-679 1.20e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.23  E-value: 1.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 547 HQDARVAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALREKAtgLELAQEEANSLSNTVH 626
Cdd:COG1196   327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL--LEALRAAAELAAQLEE 404

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1162467725 627 ADNV---------RLEREVAFLKAVMDETQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQ 679
Cdd:COG1196   405 LEEAeeallerleRLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 549-671 1.55e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 41.98  E-value: 1.55e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  549 DARVAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALREKATGLELAQEEAN--------S 620
Cdd:TIGR02169  377 DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAleikkqewK 456

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1162467725  621 LSNTVhADNVRLEREVAFLKAVMDETQKELHSTRGVLAGERARAFQLQVEV 671
Cdd:TIGR02169  457 LEQLA-ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
548-684 1.68e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 41.68  E-value: 1.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 548 QDARVAALVRRNVALEEQLSAA----------LASKDEAEKNLSLVIDSKDgLEKRLAEKDREVEALREKATGLELAQEE 617
Cdd:COG4717    86 KEEEYAELQEELEELEEELEELeaeleelreeLEKLEKLLQLLPLYQELEA-LEAELAELPERLEELEERLEELRELEEE 164

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1162467725 618 ANSLSNTVHADNVRLEREVAFLKAVMDETQKELHSTRGVLAGERArafQLQVEVFHLKQRLQTMEGR 684
Cdd:COG4717   165 LEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA---ELEEELEEAQEELEELEEE 228
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 531-618 1.68e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 40.68  E-value: 1.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 531 AKARRLLGRSSSDMNNHQDAR--------VAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEK----D 598
Cdd:COG1579    69 EEVEARIKKYEEQLGNVRNNKeyealqkeIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKkaelD 148

                          90       100
                  ....*....|....*....|
gi 1162467725 599 REVEALREKATGLELAQEEA 618
Cdd:COG1579   149 EELAELEAELEELEAEREEL 168
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
544-684 1.86e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.54  E-value: 1.86e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 544 MNNHQDARVAALVRRNVALEEQLSAALASKDEAEKNL----------------SLVIDSKDGLEKRLAEKDREVEALREK 607
Cdd:COG3206   162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALeefrqknglvdlseeaKLLLQQLSELESQLAEARAELAEAEAR 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 608 ATGLELAQEEANSLSNTVHADNV---------RLEREVAFLKA-------VMDETQKELHSTRGVLAGERARAF-QLQVE 670
Cdd:COG3206   242 LAALRAQLGSGPDALPELLQSPViqqlraqlaELEAELAELSArytpnhpDVIALRAQIAALRAQLQQEAQRILaSLEAE 321

                         170
                  ....*....|....
gi 1162467725 671 VFHLKQRLQTMEGR 684
Cdd:COG3206   322 LEALQAREASLQAQ 335
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 566-666 1.87e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.29  E-value: 1.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 566 LSAALASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALREKATGLELAQEEANSLSNTVHADNVRLEREVAFLKAVMDE 645
Cdd:COG4942    15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94

                          90       100
                  ....*....|....*....|.
gi 1162467725 646 TQKELHSTRGVLAgERARAFQ 666
Cdd:COG4942    95 LRAELEAQKEELA-ELLRALY 114
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 517-620 2.55e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 40.58  E-value: 2.55e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 517 RNDARRSSPEVVVDAK-ARRLLGRSS--SDMNNHQDARVAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKDGLEKR 593
Cdd:COG3883    97 RSGGSVSYLDVLLGSEsFSDFLDRLSalSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176

                          90       100
                  ....*....|....*....|....*..
gi 1162467725 594 LAEKDREVEALREKATGLELAQEEANS 620
Cdd:COG3883   177 QAEQEALLAQLSAEEAAAEAQLAELEA 203
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 535-689 3.08e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 40.52  E-value: 3.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 535 RLLGRSSSDMNNHQDARVAALVRRNVAL-----EEQLSAALASKD--EAEKNLSLVIDSKDGLEKRLAEKDREVEALREK 607
Cdd:COG4942    86 AELEKEIAELRAELEAQKEELAELLRALyrlgrQPPLALLLSPEDflDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 608 ATGLELAQEEANSLSNTVHADNVRLEREVAFLKAVMDETQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQTMEGRSPA 687
Cdd:COG4942   166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245


                  ..
gi 1162467725 688 AP 689
Cdd:COG4942   246 AG 247
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 520-664 3.22e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 39.91  E-value: 3.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 520 ARRSSPEVVVDAKARrlLGRSSSDMNNHQdARVAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKD--GLEKRLAEK 597
Cdd:COG1579    25 RLKELPAELAELEDE--LAALEARLEAAK-TELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyeALQKEIESL 101

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1162467725 598 DREVEALREKATGLELAQEEANSLSNTVHADNVRLEREVAFLKAVMDETQKELHSTRGVLAGERARA 664
Cdd:COG1579   102 KRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
561-666 4.05e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 40.67  E-value: 4.05e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  561 ALEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALREkatglelAQEEANSLSNTVHADNVRLEREVAFLK 640
Cdd:COG4913    689 ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQD-------RLEAAEDLARLELRALLEERFAAALGD 761

                           90       100
                   ....*....|....*....|....*.
gi 1162467725  641 AVMDETQKELHSTRGVLAGERARAFQ 666
Cdd:COG4913    762 AVERELRENLEERIDALRARLNRAEE 787
Kelch_5 pfam13854
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ...
 91-127 4.33e-03

Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.


Pssm-ID: 433528 [Multi-domain]  Cd Length: 41  Bit Score: 35.62  E-value: 4.33e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1162467725  91 PAPRFDHAAAMVGSKMVVFGG--DSGQSLLDDTKILSLD 127
Cdd:pfam13854   1 PVPRYGHCAVTVGDYIYLYGGytGGEGQPSDDVYVLSLP 39
PHA03098 PHA03098
kelch-like protein; Provisional
 163-324 5.15e-03

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 40.14  E-value: 5.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 163 NVI-LVGGKSDQPYDKISVWTFNTESELWSHMEakgDIPVSRSGHTVIRAGPVLILFGGEDaKGKKLHDLHMFDLKSLTW 241
Cdd:PHA03098  295 NVIyFIGGMNKNNLSVNSVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIY-NSISLNTVESWKPGESKW 370

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 242 ---LPLNYkgagpsPRSNHVAALYDDrVLLIFGGQSKSKT-LNDIHALDFETMVWSrvkTHGHHPSPRAGCCGALCGTKW 317
Cdd:PHA03098  371 reePPLIF------PRYNPCVVNVNN-LIYVIGGISKNDElLKTVECFSLNTNKWS---KGSPLPISHYGGCAIYHDGKI 440


                  ....*..
gi 1162467725 318 YIAGGGS 324
Cdd:PHA03098  441 YVIGGIS 447
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
547-684 5.71e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 40.00  E-value: 5.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 547 HQDARVAALVRRNVA---LEEQLSAalaSKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALREKaTGLELAQEEANSLSN 623
Cdd:COG3206   144 SPDPELAAAVANALAeayLEQNLEL---RREEARKALEFLEEQLPELRKELEEAEAALEEFRQK-NGLVDLSEEAKLLLQ 219

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1162467725 624 TVhadnVRLEREVAFLKAVMDETQKELHSTRGVLAGERARAFQLQ--VEVFHLKQRLQTMEGR 684
Cdd:COG3206   220 QL----SELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLqsPVIQQLRAQLAELEAE 278
Kelch_3 pfam13415
Galactose oxidase, central domain;
103-159 7.64e-03

Galactose oxidase, central domain;


Pssm-ID: 433188 [Multi-domain]  Cd Length: 49  Bit Score: 34.96  E-value: 7.64e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1162467725 103 GSKMVVFGG--DSGQSLLDDTKILSLDKLTWDSVAPKvrPPlngrslklrPCRGHCLVS 159
Cdd:pfam13415   1 GDKLYIFGGlgFDGQTRLNDLYVYDLDTNTWTQIGDL--PP---------PRSGHSATY 48
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 470-682 7.86e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 39.65  E-value: 7.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  470 LRRQF-RQEEECSSLAQKLQkpidddrykDAADECSEHQPPSATNPKPRNDARRSSPEVVVDAKARRLLGRSSSDMNNHQ 548
Cdd:TIGR02168  682 LEEKIeELEEKIAELEKALA---------ELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725  549 DARVAALVRRNVALEEQLSAALASKDEAEKNLSLVIDSKDGLEKRLAEKDREVEALREKATGLEL----AQEEANSLSNT 624
Cdd:TIGR02168  753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeaanLRERLESLERR 832

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1162467725  625 VHAdnvrLEREVAFLKAVMDETQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQTME 682
Cdd:TIGR02168  833 IAA----TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886
PRK02292 PRK02292
V-type ATP synthase subunit E; Provisional
 573-650 8.71e-03

V-type ATP synthase subunit E; Provisional


Pssm-ID: 235026 [Multi-domain]  Cd Length: 188  Bit Score: 38.05  E-value: 8.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1162467725 573 KDEAEKNLSLVI-----DSKDGLEKRLAEKDREVEALREKA---TGLELAQEEANSLSNTVhaDNVRlEREVAFLKAVMD 644
Cdd:PRK02292   22 RAEADEEAEEIIaeaeaDAEEILEDREAEAEREIEQLREQElssAKLEAKRERLNARKEVL--EDVR-NQVEDEIASLDG 98


                  ....*.
gi 1162467725 645 ETQKEL 650
Cdd:PRK02292   99 DKREEL 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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