retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]
List of domain hits
Name | Accession | Description | Interval | E-value | |||
Retrotran_gag_2 super family | cl26047 | gag-polypeptide of LTR copia-type; This family is found in Plants and fungi, and contains ... |
115-230 | 2.07e-13 | |||
gag-polypeptide of LTR copia-type; This family is found in Plants and fungi, and contains LTR-polyproteins, or retrotransposons of the copia-type. The actual alignment was detected with superfamily member pfam14223: Pssm-ID: 464108 Cd Length: 130 Bit Score: 66.49 E-value: 2.07e-13
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Retrotran_gag_3 super family | cl48244 | gag-polypeptide of LTR copia-type; This family is found in Plants and fungi, and contains pol ... |
41-74 | 2.02e-03 | |||
gag-polypeptide of LTR copia-type; This family is found in Plants and fungi, and contains pol polyprotein-like retroelements or retrotransposons of the copia-type. It is a short domain at the very start of these polypeptides. The actual alignment was detected with superfamily member pfam14244: Pssm-ID: 464114 Cd Length: 48 Bit Score: 35.81 E-value: 2.02e-03
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Name | Accession | Description | Interval | E-value | |||
Retrotran_gag_2 | pfam14223 | gag-polypeptide of LTR copia-type; This family is found in Plants and fungi, and contains ... |
115-230 | 2.07e-13 | |||
gag-polypeptide of LTR copia-type; This family is found in Plants and fungi, and contains LTR-polyproteins, or retrotransposons of the copia-type. Pssm-ID: 464108 Cd Length: 130 Bit Score: 66.49 E-value: 2.07e-13
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Retrotran_gag_3 | pfam14244 | gag-polypeptide of LTR copia-type; This family is found in Plants and fungi, and contains pol ... |
41-74 | 2.02e-03 | |||
gag-polypeptide of LTR copia-type; This family is found in Plants and fungi, and contains pol polyprotein-like retroelements or retrotransposons of the copia-type. It is a short domain at the very start of these polypeptides. Pssm-ID: 464114 Cd Length: 48 Bit Score: 35.81 E-value: 2.02e-03
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Name | Accession | Description | Interval | E-value | |||
Retrotran_gag_2 | pfam14223 | gag-polypeptide of LTR copia-type; This family is found in Plants and fungi, and contains ... |
115-230 | 2.07e-13 | |||
gag-polypeptide of LTR copia-type; This family is found in Plants and fungi, and contains LTR-polyproteins, or retrotransposons of the copia-type. Pssm-ID: 464108 Cd Length: 130 Bit Score: 66.49 E-value: 2.07e-13
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Retrotran_gag_3 | pfam14244 | gag-polypeptide of LTR copia-type; This family is found in Plants and fungi, and contains pol ... |
41-74 | 2.02e-03 | |||
gag-polypeptide of LTR copia-type; This family is found in Plants and fungi, and contains pol polyprotein-like retroelements or retrotransposons of the copia-type. It is a short domain at the very start of these polypeptides. Pssm-ID: 464114 Cd Length: 48 Bit Score: 35.81 E-value: 2.02e-03
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Blast search parameters | ||||
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