probable inactive lysine-specific demethylase JMJ19 isoform X1 [Brassica rapa]
lysine-specific demethylase family protein( domain architecture ID 10650807)
lysine-specific demethylase family protein is a jumonji C domain-containing (JMJD) protein and may have histone demethylase activity; contains a C5HC2 zinc finger
List of domain hits
Name | Accession | Description | Interval | E-value | |||
JmjC | pfam02373 | JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain ... |
393-506 | 1.11e-31 | |||
JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalysing hydroxylation. : Pssm-ID: 396791 Cd Length: 114 Bit Score: 119.33 E-value: 1.11e-31
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JmjN | smart00545 | Small domain found in the jumonji family of transcription factors; To date, this domain always ... |
172-213 | 1.16e-19 | |||
Small domain found in the jumonji family of transcription factors; To date, this domain always co-occurs with the JmjC domain (although the reverse is not true). : Pssm-ID: 128818 Cd Length: 42 Bit Score: 82.70 E-value: 1.16e-19
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zf-C5HC2 | pfam02928 | C5HC2 zinc finger; Predicted zinc finger with eight potential zinc ligand binding residues. ... |
613-665 | 1.30e-15 | |||
C5HC2 zinc finger; Predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji. This domain may have a DNA binding function. : Pssm-ID: 460750 Cd Length: 54 Bit Score: 71.51 E-value: 1.30e-15
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Name | Accession | Description | Interval | E-value | |||
JmjC | pfam02373 | JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain ... |
393-506 | 1.11e-31 | |||
JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalysing hydroxylation. Pssm-ID: 396791 Cd Length: 114 Bit Score: 119.33 E-value: 1.11e-31
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JmjN | smart00545 | Small domain found in the jumonji family of transcription factors; To date, this domain always ... |
172-213 | 1.16e-19 | |||
Small domain found in the jumonji family of transcription factors; To date, this domain always co-occurs with the JmjC domain (although the reverse is not true). Pssm-ID: 128818 Cd Length: 42 Bit Score: 82.70 E-value: 1.16e-19
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zf-C5HC2 | pfam02928 | C5HC2 zinc finger; Predicted zinc finger with eight potential zinc ligand binding residues. ... |
613-665 | 1.30e-15 | |||
C5HC2 zinc finger; Predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji. This domain may have a DNA binding function. Pssm-ID: 460750 Cd Length: 54 Bit Score: 71.51 E-value: 1.30e-15
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JmjN | pfam02375 | jmjN domain; |
174-207 | 2.32e-13 | |||
jmjN domain; Pssm-ID: 460542 Cd Length: 34 Bit Score: 64.23 E-value: 2.32e-13
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Name | Accession | Description | Interval | E-value | |||
JmjC | pfam02373 | JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain ... |
393-506 | 1.11e-31 | |||
JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalysing hydroxylation. Pssm-ID: 396791 Cd Length: 114 Bit Score: 119.33 E-value: 1.11e-31
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JmjN | smart00545 | Small domain found in the jumonji family of transcription factors; To date, this domain always ... |
172-213 | 1.16e-19 | |||
Small domain found in the jumonji family of transcription factors; To date, this domain always co-occurs with the JmjC domain (although the reverse is not true). Pssm-ID: 128818 Cd Length: 42 Bit Score: 82.70 E-value: 1.16e-19
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zf-C5HC2 | pfam02928 | C5HC2 zinc finger; Predicted zinc finger with eight potential zinc ligand binding residues. ... |
613-665 | 1.30e-15 | |||
C5HC2 zinc finger; Predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji. This domain may have a DNA binding function. Pssm-ID: 460750 Cd Length: 54 Bit Score: 71.51 E-value: 1.30e-15
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JmjN | pfam02375 | jmjN domain; |
174-207 | 2.32e-13 | |||
jmjN domain; Pssm-ID: 460542 Cd Length: 34 Bit Score: 64.23 E-value: 2.32e-13
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Blast search parameters | ||||
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