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Conserved domains on  [gi|1827689228|ref|XP_018512849|]
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uncharacterized protein LOC103860132 [Brassica rapa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PMD super family cl46345
Plant mobile domain; This domain was identified by Babu and colleagues in a variety of ...
 3-70 3.27e-13

Plant mobile domain; This domain was identified by Babu and colleagues in a variety of transposases.


The actual alignment was detected with superfamily member pfam09331:

Pssm-ID: 480685  Cd Length: 133  Bit Score: 64.64  E-value: 3.27e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1827689228   3 SELQSLFTKIRNWSFEKRRMIGLLCVLSIGVLGISPGSRIPLDQAKRVLDIEAFDRYPWGRVGFSSLV 70
Cdd:pfam09331  65 TDLIRMLENKTWTSDEDRVKLALLYFLHGVLLATDLNPKIILEHAFLVVDLGEFESYPWGRLSFDELI 132
 
Name Accession Description Interval E-value
DUF1985 pfam09331
Domain of unknown function (DUF1985); Members of this family of functionally uncharacterized ...
 3-70 3.27e-13

Domain of unknown function (DUF1985); Members of this family of functionally uncharacterized domains are found in a set of Arabidopsis thaliana hypothetical proteins.


Pssm-ID: 462759  Cd Length: 133  Bit Score: 64.64  E-value: 3.27e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1827689228   3 SELQSLFTKIRNWSFEKRRMIGLLCVLSIGVLGISPGSRIPLDQAKRVLDIEAFDRYPWGRVGFSSLV 70
Cdd:pfam09331  65 TDLIRMLENKTWTSDEDRVKLALLYFLHGVLLATDLNPKIILEHAFLVVDLGEFESYPWGRLSFDELI 132
 
Name Accession Description Interval E-value
DUF1985 pfam09331
Domain of unknown function (DUF1985); Members of this family of functionally uncharacterized ...
 3-70 3.27e-13

Domain of unknown function (DUF1985); Members of this family of functionally uncharacterized domains are found in a set of Arabidopsis thaliana hypothetical proteins.


Pssm-ID: 462759  Cd Length: 133  Bit Score: 64.64  E-value: 3.27e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1827689228   3 SELQSLFTKIRNWSFEKRRMIGLLCVLSIGVLGISPGSRIPLDQAKRVLDIEAFDRYPWGRVGFSSLV 70
Cdd:pfam09331  65 TDLIRMLENKTWTSDEDRVKLALLYFLHGVLLATDLNPKIILEHAFLVVDLGEFESYPWGRLSFDELI 132
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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