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Conserved domains on  [gi|1040825253|ref|XP_017218525|]
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dof zinc finger protein DOF5.7 [Daucus carota subsp. sativus]

Protein Classification

dof zinc finger protein( domain architecture ID 10496976)

dof zinc finger protein acts as a transcription factor and may play multiple roles in different biological processes including plant hormone and stress responses, flowering time, germination, and seed storage protein accumulation, among others; contains a DOF (DNA binding with one finger) domain that includes a C2C2-type zinc finger motif specifically binds to an element with the sequence 5'-AAAG-3'

Gene Ontology:  GO:0003677|GO:0046872|GO:0006355
PubMed:  12665246|11179890|17180359

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-Dof pfam02701
Dof domain, zinc finger; The Dof domain is a zinc finger DNA-binding domain, that shows ...
 29-84 2.43e-40

Dof domain, zinc finger; The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger.


:

Pssm-ID: 397014  Cd Length: 57  Bit Score: 135.86  E-value: 2.43e-40
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1040825253  29 APRCPRCDSPNTKFCYYNNYSLSQPRYFCKTCRRYWTKGGALRNIPIGGGCRKNKK 84
Cdd:pfam02701   1 PLKCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTHGGTLRNVPVGGGCRKNKR 56
 
Name Accession Description Interval E-value
zf-Dof pfam02701
Dof domain, zinc finger; The Dof domain is a zinc finger DNA-binding domain, that shows ...
 29-84 2.43e-40

Dof domain, zinc finger; The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger.


Pssm-ID: 397014  Cd Length: 57  Bit Score: 135.86  E-value: 2.43e-40
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1040825253  29 APRCPRCDSPNTKFCYYNNYSLSQPRYFCKTCRRYWTKGGALRNIPIGGGCRKNKK 84
Cdd:pfam02701   1 PLKCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTHGGTLRNVPVGGGCRKNKR 56
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
25-65 1.61e-03

Transposase InsA [Mobilome: prophages, transposons];


Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 39.47  E-value: 1.61e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1040825253  25 RPAEAPRCPRCDSPNTKFcyYNNYSLSQPRYFCKTCRRYWT 65
Cdd:COG3677    12 RWPNGPVCPHCGSTRIVK--NGKTRNGRQRYRCKDCGRTFT 50
 
Name Accession Description Interval E-value
zf-Dof pfam02701
Dof domain, zinc finger; The Dof domain is a zinc finger DNA-binding domain, that shows ...
 29-84 2.43e-40

Dof domain, zinc finger; The Dof domain is a zinc finger DNA-binding domain, that shows resemblance to the Cys2 zinc finger.


Pssm-ID: 397014  Cd Length: 57  Bit Score: 135.86  E-value: 2.43e-40
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1040825253  29 APRCPRCDSPNTKFCYYNNYSLSQPRYFCKTCRRYWTKGGALRNIPIGGGCRKNKK 84
Cdd:pfam02701   1 PLKCPRCNSTNTKFCYYNNYSLSQPRYFCKACRRYWTHGGTLRNVPVGGGCRKNKR 56
InsA COG3677
Transposase InsA [Mobilome: prophages, transposons];
25-65 1.61e-03

Transposase InsA [Mobilome: prophages, transposons];


Pssm-ID: 442893 [Multi-domain]  Cd Length: 241  Bit Score: 39.47  E-value: 1.61e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1040825253  25 RPAEAPRCPRCDSPNTKFcyYNNYSLSQPRYFCKTCRRYWT 65
Cdd:COG3677    12 RWPNGPVCPHCGSTRIVK--NGKTRNGRQRYRCKDCGRTFT 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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