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Conserved domains on  [gi|1034587498|ref|XP_016876923|]
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rho guanine nucleotide exchange factor 40 isoform X4 [Homo sapiens]

Protein Classification

RhoGEF and PH_puratrophin-1 domain-containing protein( domain architecture ID 10242905)

protein containing domains SPEC, RhoGEF, and PH_puratrophin-1

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PH_puratrophin-1 cd13242
Puratrophin-1 pleckstrin homology (PH) domain; Puratrophin-1 (also called Purkinje cell ...
1052-1187 9.54e-80

Puratrophin-1 pleckstrin homology (PH) domain; Puratrophin-1 (also called Purkinje cell atrophy-associated protein 1 or PLEKHG4/Pleckstrin homology domain-containing family G member 4) contains a spectrin repeat, a RhoGEF (DH) domain, and a PH domain. It is thought to function in intracellular signaling and cytoskeleton dynamics at the Golgi. Puratrophin-1 is expressed in kidney, Leydig cells in the testis, epithelial cells in the prostate gland and Langerhans islet in the pancreas. A single nucleotide substitution in the puratrophin-1 gene were once thought to result in autosomal dominant cerebellar ataxia (ADCA), but now it has been demonstrated that this ataxia is a result of defects in the BEAN gene. Puratrophin contains a domain architecture similar to that of Dbl family members Dbs and Trio. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a RhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. Trio plays an essential role in regulating the actin cytoskeleton during axonal guidance and branching. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


:

Pssm-ID: 270062  Cd Length: 136  Bit Score: 257.99  E-value: 9.54e-80
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498 1052 REQEARGRDLLAVEAVRGCEIDLKEQGQLLHRDPFTVICGRKKCLRHVFLFEHLLLFSKLKGPEGGSEMFVYKQAFKTAD 1131
Cdd:cd13242      1 RFQLRHGNDLLAMDSIRGCDVNLKEQGQLLRQDEFLVWQGRKKCLRHVFLFEDLILFSKPKKTPGGKDVYIYKHSIKTSD 80
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034587498 1132 MGLTENIGDSGLCFELWFRRRRAREAYTLQATSPEIKLKWTSSIAQLLWRQAAHNK 1187
Cdd:cd13242     81 IGLTENVGDSGLKFEIWFRRRKARDTYILQATSPEIKQAWTSDIAKLLWKQAIRNR 136
RhoGEF super family cl47571
RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called ...
898-1053 2.20e-10

RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains.


The actual alignment was detected with superfamily member pfam00621:

Pssm-ID: 459876 [Multi-domain]  Cd Length: 176  Bit Score: 61.16  E-value: 2.20e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  898 VSELIACEQDYVATLS-------EPVPPPGPELTPELR---GTWaaalsarERLRSFHRTHFLRELQGCATHPLRIGACF 967
Cdd:pfam00621    2 IKELLQTERSYVRDLEilvevflPPNSKPLSESEEEIKtifSNI-------EEIYELHRQLLLEELLKEWISIQRIGDIF 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  968 LRHGDQFSLYAQYVKHRhklENGLAALSPLSKGSMEAGPYLPRALQQPLEQ--------------LTRYGRLLEELLReA 1033
Cdd:pfam00621   75 LKFAPGFKVYSTYCSNY---PKALKLLKKLLKKNPKFRAFLEELEANPECRgldlnsflikpvqrIPRYPLLLKELLK-H 150
                          170       180
                   ....*....|....*....|
gi 1034587498 1034 GPELSSECRALGAAVQLLRE 1053
Cdd:pfam00621  151 TPPDHPDYEDLKKALEAIKE 170
SPEC super family cl02488
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ...
594-772 3.75e-05

Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here


The actual alignment was detected with superfamily member cd00176:

Pssm-ID: 413338 [Multi-domain]  Cd Length: 213  Bit Score: 46.28  E-value: 3.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  594 LRRLQQVLQWLSGpgEEQLASFAMPGDTLSALQETELRFRAFSAEVQER------LAQAREALALEENATSQKV---LDI 664
Cdd:cd00176      6 LRDADELEAWLSE--KEELLSSTDYGDDLESVEALLKKHEALEAELAAHeerveaLNELGEQLIEEGHPDAEEIqerLEE 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  665 FEQRLEQVESG-------LHRALRLQRFFQQAHE---WVDEGFARLAGAGPGR--EAVLAAL----ALRRAPEPSAGTFQ 728
Cdd:cd00176     84 LNQRWEELRELaeerrqrLEEALDLQQFFRDADDleqWLEEKEAALASEDLGKdlESVEELLkkhkELEEELEAHEPRLK 163
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1034587498  729 EMRALALDLGSPAALREWGRCQARCQELERRIQQhVGEEASPRG 772
Cdd:cd00176    164 SLNELAEELLEEGHPDADEEIEEKLEELNERWEE-LLELAEERQ 206
 
Name Accession Description Interval E-value
PH_puratrophin-1 cd13242
Puratrophin-1 pleckstrin homology (PH) domain; Puratrophin-1 (also called Purkinje cell ...
1052-1187 9.54e-80

Puratrophin-1 pleckstrin homology (PH) domain; Puratrophin-1 (also called Purkinje cell atrophy-associated protein 1 or PLEKHG4/Pleckstrin homology domain-containing family G member 4) contains a spectrin repeat, a RhoGEF (DH) domain, and a PH domain. It is thought to function in intracellular signaling and cytoskeleton dynamics at the Golgi. Puratrophin-1 is expressed in kidney, Leydig cells in the testis, epithelial cells in the prostate gland and Langerhans islet in the pancreas. A single nucleotide substitution in the puratrophin-1 gene were once thought to result in autosomal dominant cerebellar ataxia (ADCA), but now it has been demonstrated that this ataxia is a result of defects in the BEAN gene. Puratrophin contains a domain architecture similar to that of Dbl family members Dbs and Trio. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a RhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. Trio plays an essential role in regulating the actin cytoskeleton during axonal guidance and branching. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270062  Cd Length: 136  Bit Score: 257.99  E-value: 9.54e-80
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498 1052 REQEARGRDLLAVEAVRGCEIDLKEQGQLLHRDPFTVICGRKKCLRHVFLFEHLLLFSKLKGPEGGSEMFVYKQAFKTAD 1131
Cdd:cd13242      1 RFQLRHGNDLLAMDSIRGCDVNLKEQGQLLRQDEFLVWQGRKKCLRHVFLFEDLILFSKPKKTPGGKDVYIYKHSIKTSD 80
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034587498 1132 MGLTENIGDSGLCFELWFRRRRAREAYTLQATSPEIKLKWTSSIAQLLWRQAAHNK 1187
Cdd:cd13242     81 IGLTENVGDSGLKFEIWFRRRKARDTYILQATSPEIKQAWTSDIAKLLWKQAIRNR 136
RhoGEF pfam00621
RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called ...
898-1053 2.20e-10

RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains.


Pssm-ID: 459876 [Multi-domain]  Cd Length: 176  Bit Score: 61.16  E-value: 2.20e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  898 VSELIACEQDYVATLS-------EPVPPPGPELTPELR---GTWaaalsarERLRSFHRTHFLRELQGCATHPLRIGACF 967
Cdd:pfam00621    2 IKELLQTERSYVRDLEilvevflPPNSKPLSESEEEIKtifSNI-------EEIYELHRQLLLEELLKEWISIQRIGDIF 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  968 LRHGDQFSLYAQYVKHRhklENGLAALSPLSKGSMEAGPYLPRALQQPLEQ--------------LTRYGRLLEELLReA 1033
Cdd:pfam00621   75 LKFAPGFKVYSTYCSNY---PKALKLLKKLLKKNPKFRAFLEELEANPECRgldlnsflikpvqrIPRYPLLLKELLK-H 150
                          170       180
                   ....*....|....*....|
gi 1034587498 1034 GPELSSECRALGAAVQLLRE 1053
Cdd:pfam00621  151 TPPDHPDYEDLKKALEAIKE 170
RhoGEF cd00160
Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous ...
894-1053 2.30e-09

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.


Pssm-ID: 238091 [Multi-domain]  Cd Length: 181  Bit Score: 58.08  E-value: 2.30e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  894 QQRLVSELIACEQDYVATL-------SEPVPPPGPELTPELRgtwAAALSARERLRSFHRTHFLRELQGCA---THPLRI 963
Cdd:cd00160      1 RQEVIKELLQTERNYVRDLkllvevfLKPLDKELLPLSPEEV---ELLFGNIEEIYEFHRIFLKSLEERVEewdKSGPRI 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  964 GACFLRHGDQFSLYAQYVKHRHK----LENGLAALSPLSKGSMEAGPY-----LPRALQQPLEQLTRYGRLLEELLREAg 1034
Cdd:cd00160     78 GDVFLKLAPFFKIYSEYCSNHPDalelLKKLKKFNKFFQEFLEKAESEcgrlkLESLLLKPVQRLTKYPLLLKELLKHT- 156
                          170
                   ....*....|....*....
gi 1034587498 1035 PELSSECRALGAAVQLLRE 1053
Cdd:cd00160    157 PDGHEDREDLKKALEAIKE 175
RhoGEF smart00325
Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Guanine nucleotide exchange ...
897-1053 2.90e-08

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.


Pssm-ID: 214619 [Multi-domain]  Cd Length: 180  Bit Score: 55.00  E-value: 2.90e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498   897 LVSELIACEQDYVATL-------SEPVPPPGPELTPELRGTWAAALsarERLRSFHRThFLRELQGC----ATHPLRIGA 965
Cdd:smart00325    1 VLKELLQTERNYVRDLkllvevfLKPLKKELKLLSPNELETLFGNI---EEIYEFHRD-FLDELEERieewDDSVERIGD 76
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498   966 CFLRHGDQFSLYAQYVKHR---HKLENGLAALSPLSKGSMEAGP-------YLPRALQQPLEQLTRYGRLLEELLREagP 1035
Cdd:smart00325   77 VFLKLEEFFKIYSEYCSNHpdaLELLKKLKKNPRFQKFLKEIESspqcrrlTLESLLLKPVQRLTKYPLLLKELLKH--T 154
                           170
                    ....*....|....*....
gi 1034587498  1036 ELSSECR-ALGAAVQLLRE 1053
Cdd:smart00325  155 PEDHEDReDLKKALKAIKE 173
SPEC cd00176
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ...
594-772 3.75e-05

Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here


Pssm-ID: 238103 [Multi-domain]  Cd Length: 213  Bit Score: 46.28  E-value: 3.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  594 LRRLQQVLQWLSGpgEEQLASFAMPGDTLSALQETELRFRAFSAEVQER------LAQAREALALEENATSQKV---LDI 664
Cdd:cd00176      6 LRDADELEAWLSE--KEELLSSTDYGDDLESVEALLKKHEALEAELAAHeerveaLNELGEQLIEEGHPDAEEIqerLEE 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  665 FEQRLEQVESG-------LHRALRLQRFFQQAHE---WVDEGFARLAGAGPGR--EAVLAAL----ALRRAPEPSAGTFQ 728
Cdd:cd00176     84 LNQRWEELRELaeerrqrLEEALDLQQFFRDADDleqWLEEKEAALASEDLGKdlESVEELLkkhkELEEELEAHEPRLK 163
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1034587498  729 EMRALALDLGSPAALREWGRCQARCQELERRIQQhVGEEASPRG 772
Cdd:cd00176    164 SLNELAEELLEEGHPDADEEIEEKLEELNERWEE-LLELAEERQ 206
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
1077-1179 5.55e-05

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 43.31  E-value: 5.55e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  1077 QGQLLHRDPFTvicGRKKCLRHVFLFEHLLLFSKLKGPEGGSEmfvYKQAFKTADMGLTENIGDSGL----CFELWFRRR 1152
Cdd:smart00233    4 EGWLYKKSGGG---KKSWKKRYFVLFNSTLLYYKSKKDKKSYK---PKGSIDLSGCTVREAPDPDSSkkphCFEIKTSDR 77
                            90       100
                    ....*....|....*....|....*..
gi 1034587498  1153 RAreaYTLQATSPEIKLKWTSSIAQLL 1179
Cdd:smart00233   78 KT---LLLQAESEEEREKWVEALRKAI 101
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
566-769 5.07e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.44  E-value: 5.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  566 LYQEVDEAIHQLVRLSNLHVQQQEQRQCLRRLQQVlqwlsgpgEEQLASFAMPGDTLSALQETELRFRAFSAEVQERLAQ 645
Cdd:COG4913    223 TFEAADALVEHFDDLERAHEALEDAREQIELLEPI--------RELAERYAAARERLAELEYLRAALRLWFAQRRLELLE 294
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  646 AREALALEENATSQKVLDIFEQRLEQVE---SGLHRALR---------LQRFFQQAHEWVDEGFARLAGAgpgrEAVLAA 713
Cdd:COG4913    295 AELEELRAELARLEAELERLEARLDALReelDELEAQIRgnggdrleqLEREIERLERELEERERRRARL----EALLAA 370
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034587498  714 LALrrAPEPSAGTFQEMRALALDLgSPAALREWGRCQARCQELERRIQQHVGEEAS 769
Cdd:COG4913    371 LGL--PLPASAEEFAALRAEAAAL-LEALEEELEALEEALAEAEAALRDLRRELRE 423
PH pfam00169
PH domain; PH stands for pleckstrin homology.
1077-1175 5.79e-03

PH domain; PH stands for pleckstrin homology.


Pssm-ID: 459697 [Multi-domain]  Cd Length: 105  Bit Score: 37.93  E-value: 5.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498 1077 QGQLLHRDPFTVIcGRKKclRHVFLFEHLLLFSKLKGPEGGSEMfVYKQAFKTADMGLTENIGDSG--LCFELWFRRRRA 1154
Cdd:pfam00169    4 EGWLLKKGGGKKK-SWKK--RYFVLFDGSLLYYKDDKSGKSKEP-KGSISLSGCEVVEVVASDSPKrkFCFELRTGERTG 79
                           90       100
                   ....*....|....*....|.
gi 1034587498 1155 REAYTLQATSPEIKLKWTSSI 1175
Cdd:pfam00169   80 KRTYLLQAESEEERKDWIKAI 100
 
Name Accession Description Interval E-value
PH_puratrophin-1 cd13242
Puratrophin-1 pleckstrin homology (PH) domain; Puratrophin-1 (also called Purkinje cell ...
1052-1187 9.54e-80

Puratrophin-1 pleckstrin homology (PH) domain; Puratrophin-1 (also called Purkinje cell atrophy-associated protein 1 or PLEKHG4/Pleckstrin homology domain-containing family G member 4) contains a spectrin repeat, a RhoGEF (DH) domain, and a PH domain. It is thought to function in intracellular signaling and cytoskeleton dynamics at the Golgi. Puratrophin-1 is expressed in kidney, Leydig cells in the testis, epithelial cells in the prostate gland and Langerhans islet in the pancreas. A single nucleotide substitution in the puratrophin-1 gene were once thought to result in autosomal dominant cerebellar ataxia (ADCA), but now it has been demonstrated that this ataxia is a result of defects in the BEAN gene. Puratrophin contains a domain architecture similar to that of Dbl family members Dbs and Trio. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a RhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. Trio plays an essential role in regulating the actin cytoskeleton during axonal guidance and branching. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270062  Cd Length: 136  Bit Score: 257.99  E-value: 9.54e-80
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498 1052 REQEARGRDLLAVEAVRGCEIDLKEQGQLLHRDPFTVICGRKKCLRHVFLFEHLLLFSKLKGPEGGSEMFVYKQAFKTAD 1131
Cdd:cd13242      1 RFQLRHGNDLLAMDSIRGCDVNLKEQGQLLRQDEFLVWQGRKKCLRHVFLFEDLILFSKPKKTPGGKDVYIYKHSIKTSD 80
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034587498 1132 MGLTENIGDSGLCFELWFRRRRAREAYTLQATSPEIKLKWTSSIAQLLWRQAAHNK 1187
Cdd:cd13242     81 IGLTENVGDSGLKFEIWFRRRKARDTYILQATSPEIKQAWTSDIAKLLWKQAIRNR 136
PH_Dbs cd01227
DBL's big sister protein pleckstrin homology (PH) domain; Dbs (also called MCF2-transforming ...
1066-1182 1.61e-20

DBL's big sister protein pleckstrin homology (PH) domain; Dbs (also called MCF2-transforming sequence-like protein 2) is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 269934 [Multi-domain]  Cd Length: 126  Bit Score: 88.79  E-value: 1.61e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498 1066 AVRGCEIDLKEQGQLLHRDPFTVICGRKK-----------CLRHVFLFEHLLLFSKLKGPEGGSEMFVYKQAFKTADMGL 1134
Cdd:cd01227      1 AITGYDGNLGDLGKLLMQGSFNVWTEHKKghtkklarfkpMQRHIFLYEKAVLFCKKRGENGEAPSYSYKNSLNTTAVGL 80
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1034587498 1135 TENIGDSGLCFELWFRRRraREAYTLQATSPEIKLKWTSSIAQLLWRQ 1182
Cdd:cd01227     81 TENVKGDTKKFEIWLNGR--EEVFIIQAPTPEIKAAWVKAIRQVLLSQ 126
PH2_Kalirin_Trio_p63RhoGEF cd13241
p63RhoGEF pleckstrin homology (PH) domain, repeat 2; The guanine nucleotide exchange factor ...
1077-1182 3.40e-18

p63RhoGEF pleckstrin homology (PH) domain, repeat 2; The guanine nucleotide exchange factor p63RhoGEF is an effector of the heterotrimeric G protein, Galphaq and linking Galphaq-coupled receptors (GPCRs) to the activation of RhoA. The Dbl(DH) and PH domains of p63RhoGEF interact with the effector-binding site and the C-terminal region of Galphaq and appear to relieve autoinhibition of the catalytic DH domain by the PH domain. Trio, Duet, and p63RhoGEF are shown to constitute a family of Galphaq effectors that appear to activate RhoA both in vitro and in intact cells. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. Trio plays an essential role in regulating the actin cytoskeleton during axonal guidance and branching. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270061  Cd Length: 140  Bit Score: 82.31  E-value: 3.40e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498 1077 QGQLLHRDPFTVI----CGRKKCL-RHVFLFEHLLLFSKL--KGPEGGSEMFVYKQAFKTADMGLTENIGDSGLCFELWF 1149
Cdd:cd13241     14 QGKLLLQGTLLVSepsaGLLQKGKeRRVFLFEQIIIFSEIlgKKTQFSNPGYIYKNHIKVNKMSLEENVDGDPLRFALKS 93
                           90       100       110
                   ....*....|....*....|....*....|....
gi 1034587498 1150 R-RRRAREAYTLQATSPEIKLKWTSSIAQLLWRQ 1182
Cdd:cd13241     94 RdPNNPSETFILQAASPEVRQEWVDTINQILDTQ 127
PH1_Kalirin_Trio_like cd13240
Triple functional domain pleckstrin homology pleckstrin homology (PH) domain, repeat 1; ...
1069-1179 4.31e-15

Triple functional domain pleckstrin homology pleckstrin homology (PH) domain, repeat 1; RhoGEFs, Kalirin and Trio, the mammalian homologs of Drosophila Trio and Caenorhabditis elegans UNC-73 regulate a novel step in secretory granule maturation. Their signaling modulates the extent to which regulated cargo enter and remain in the regulated secretory pathway. This allows for fine tuning of peptides released by a single secretory cell type with impaired signaling leading to pathological states. Trio plays an essential role in regulating the actin cytoskeleton during axonal guidance and branching. Kalirin and Trio are encoded by separate genes in mammals and by a single one in invertebrates. Kalirin and Trio share the same complex multidomain structure and display several splice variants. The longest Kalirin and Trio proteins have a Sec14 domain, a stretch of spectrin repeats, a RhoGEF(DH)/PH cassette (also called GEF1), an SH3 domain, a second RhoGEF(DH)/PH cassette (also called GEF2), a second SH3 domain, Ig/FNIII domains, and a kinase domain. The first RhoGEF(DH)/PH cassette catalyzes exchange on Rac1 and RhoG while the second RhoGEF(DH)/PH cassette is specific for RhoA. Kalirin and Trio are closely related to p63RhoGEF and have PH domains of similar function. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.


Pssm-ID: 270060  Cd Length: 123  Bit Score: 72.80  E-value: 4.31e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498 1069 GCEIDLKEQGQLLHRDPFTVICGR---KKCL-RHVFLFEHLLLFSK-LKGPEGGSEmFVYKQAFKTADMGLTENIGDSGL 1143
Cdd:cd13240      4 GCDEDLDSLGEVILQDSFQVWDPKqliRKGReRHVFLFELCLVFSKeVKDSNGKSK-YIYKSRLMTSEIGVTEHIEGDPC 82
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1034587498 1144 CFELWFRRRRAREAYT-LQATSPEIKLKWTSSIAQLL 1179
Cdd:cd13240     83 KFALWTGRVPTSDNKIvLKASSLEVKQTWVKKLREVI 119
RhoGEF pfam00621
RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called ...
898-1053 2.20e-10

RhoGEF domain; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains.


Pssm-ID: 459876 [Multi-domain]  Cd Length: 176  Bit Score: 61.16  E-value: 2.20e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  898 VSELIACEQDYVATLS-------EPVPPPGPELTPELR---GTWaaalsarERLRSFHRTHFLRELQGCATHPLRIGACF 967
Cdd:pfam00621    2 IKELLQTERSYVRDLEilvevflPPNSKPLSESEEEIKtifSNI-------EEIYELHRQLLLEELLKEWISIQRIGDIF 74
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  968 LRHGDQFSLYAQYVKHRhklENGLAALSPLSKGSMEAGPYLPRALQQPLEQ--------------LTRYGRLLEELLReA 1033
Cdd:pfam00621   75 LKFAPGFKVYSTYCSNY---PKALKLLKKLLKKNPKFRAFLEELEANPECRgldlnsflikpvqrIPRYPLLLKELLK-H 150
                          170       180
                   ....*....|....*....|
gi 1034587498 1034 GPELSSECRALGAAVQLLRE 1053
Cdd:pfam00621  151 TPPDHPDYEDLKKALEAIKE 170
RhoGEF cd00160
Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous ...
894-1053 2.30e-09

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.


Pssm-ID: 238091 [Multi-domain]  Cd Length: 181  Bit Score: 58.08  E-value: 2.30e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  894 QQRLVSELIACEQDYVATL-------SEPVPPPGPELTPELRgtwAAALSARERLRSFHRTHFLRELQGCA---THPLRI 963
Cdd:cd00160      1 RQEVIKELLQTERNYVRDLkllvevfLKPLDKELLPLSPEEV---ELLFGNIEEIYEFHRIFLKSLEERVEewdKSGPRI 77
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  964 GACFLRHGDQFSLYAQYVKHRHK----LENGLAALSPLSKGSMEAGPY-----LPRALQQPLEQLTRYGRLLEELLREAg 1034
Cdd:cd00160     78 GDVFLKLAPFFKIYSEYCSNHPDalelLKKLKKFNKFFQEFLEKAESEcgrlkLESLLLKPVQRLTKYPLLLKELLKHT- 156
                          170
                   ....*....|....*....
gi 1034587498 1035 PELSSECRALGAAVQLLRE 1053
Cdd:cd00160    157 PDGHEDREDLKKALEAIKE 175
PH_PLEKHG1_G2_G3 cd13243
Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) ...
1070-1179 3.64e-09

Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) domain; PLEKHG1 (also called ARHGEF41), PLEKHG2 (also called ARHGEF42 or CLG/common-site lymphoma/leukemia guanine nucleotide exchange factor2), and PLEKHG3 (also called ARHGEF43) have RhoGEF DH/double-homology domains in tandem with a PH domain which is involved in phospholipid binding. They function as a guanine nucleotide exchange factor (GEF) and are involved in the regulation of Rho protein signal transduction. Mutations in PLEKHG1 have been associated panic disorder (PD), an anxiety disorder characterized by panic attacks and anticipatory anxiety. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270063 [Multi-domain]  Cd Length: 147  Bit Score: 56.59  E-value: 3.64e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498 1070 CEIDLKEQGQLLHRDPFTVICgrKKCLRHVFLFEHLLLFSKLKGPEGgsemFVYKQAFKTADMGLTENIGDSGLCFE-LW 1148
Cdd:cd13243     42 EGPELTTYGDLVLEGTFRMAG--AKNERLLFLFDKMLLITKKREDGI----LQYKTHIMCSNLMLSESIPKEPLSFQvLP 115
                           90       100       110
                   ....*....|....*....|....*....|.
gi 1034587498 1149 FRRRRAReaYTLQATSPEIKLKWTSSIAQLL 1179
Cdd:cd13243    116 FDNPKLQ--YTLQAKNQEQKRLWTQEIKRLI 144
PH_Obscurin cd13239
Obscurin pleckstrin homology (PH) domain; Obscurin (also called Obscurin-RhoGEF; ...
1097-1181 2.58e-08

Obscurin pleckstrin homology (PH) domain; Obscurin (also called Obscurin-RhoGEF; Obscurin-myosin light chain kinase/Obscurin-MLCK) is a giant muscle protein that is concentrated at the peripheries of Z-disks and M-lines. It binds small ankyrin I, a component of the sarcoplasmic reticulum (SR) membrane. It is associated with the contractile apparatus through binding with titin and sarcomeric myosin. It plays important roles in the organization and assembly of the myofibril and the SR. Obscurin has been observed as alternatively-spliced isoforms. The major isoform in sleletal muscle, approximately 800 kDa in size, is composed of many adhesion modules and signaling domains. It harbors 49 Ig and 2 FNIII repeats at the N-terminues, a complex middle region with additional Ig domains, an IQ motif, and a conserved SH3 domain near RhoGEF and PH domains, and a non-modular C-terminus with phosphorylation motifs. The obscurin gene also encodes two kinase domains, which are not part of the 800 kDa form of the protein, but is part of smaller spliced products that present in heart muscle. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270059  Cd Length: 125  Bit Score: 53.70  E-value: 2.58e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498 1097 RHVFLFEHLLLFSKLKGPEG-GSEMFVYKQAFKTADMGLTENIGDSGLCFELWFRRRRAREAYTLQATSPEIKLKWTSSI 1175
Cdd:cd13239     39 RHVFLFKNCVVICKPKRDSRtDTVTYVFKNKMKLSDIDVKDTVEGDDRSFGLWHEHRGSVRKYTLQARSAIIKSSWLKDL 118

                   ....*.
gi 1034587498 1176 AQLLWR 1181
Cdd:cd13239    119 RDLQQR 124
RhoGEF smart00325
Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Guanine nucleotide exchange ...
897-1053 2.90e-08

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.


Pssm-ID: 214619 [Multi-domain]  Cd Length: 180  Bit Score: 55.00  E-value: 2.90e-08
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498   897 LVSELIACEQDYVATL-------SEPVPPPGPELTPELRGTWAAALsarERLRSFHRThFLRELQGC----ATHPLRIGA 965
Cdd:smart00325    1 VLKELLQTERNYVRDLkllvevfLKPLKKELKLLSPNELETLFGNI---EEIYEFHRD-FLDELEERieewDDSVERIGD 76
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498   966 CFLRHGDQFSLYAQYVKHR---HKLENGLAALSPLSKGSMEAGP-------YLPRALQQPLEQLTRYGRLLEELLREagP 1035
Cdd:smart00325   77 VFLKLEEFFKIYSEYCSNHpdaLELLKKLKKNPRFQKFLKEIESspqcrrlTLESLLLKPVQRLTKYPLLLKELLKH--T 154
                           170
                    ....*....|....*....
gi 1034587498  1036 ELSSECR-ALGAAVQLLRE 1053
Cdd:smart00325  155 PEDHEDReDLKKALKAIKE 173
SPEC cd00176
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ...
594-772 3.75e-05

Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here


Pssm-ID: 238103 [Multi-domain]  Cd Length: 213  Bit Score: 46.28  E-value: 3.75e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  594 LRRLQQVLQWLSGpgEEQLASFAMPGDTLSALQETELRFRAFSAEVQER------LAQAREALALEENATSQKV---LDI 664
Cdd:cd00176      6 LRDADELEAWLSE--KEELLSSTDYGDDLESVEALLKKHEALEAELAAHeerveaLNELGEQLIEEGHPDAEEIqerLEE 83
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  665 FEQRLEQVESG-------LHRALRLQRFFQQAHE---WVDEGFARLAGAGPGR--EAVLAAL----ALRRAPEPSAGTFQ 728
Cdd:cd00176     84 LNQRWEELRELaeerrqrLEEALDLQQFFRDADDleqWLEEKEAALASEDLGKdlESVEELLkkhkELEEELEAHEPRLK 163
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 1034587498  729 EMRALALDLGSPAALREWGRCQARCQELERRIQQhVGEEASPRG 772
Cdd:cd00176    164 SLNELAEELLEEGHPDADEEIEEKLEELNERWEE-LLELAEERQ 206
PH smart00233
Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The ...
1077-1179 5.55e-05

Pleckstrin homology domain; Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.


Pssm-ID: 214574 [Multi-domain]  Cd Length: 102  Bit Score: 43.31  E-value: 5.55e-05
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  1077 QGQLLHRDPFTvicGRKKCLRHVFLFEHLLLFSKLKGPEGGSEmfvYKQAFKTADMGLTENIGDSGL----CFELWFRRR 1152
Cdd:smart00233    4 EGWLYKKSGGG---KKSWKKRYFVLFNSTLLYYKSKKDKKSYK---PKGSIDLSGCTVREAPDPDSSkkphCFEIKTSDR 77
                            90       100
                    ....*....|....*....|....*..
gi 1034587498  1153 RAreaYTLQATSPEIKLKWTSSIAQLL 1179
Cdd:smart00233   78 KT---LLLQAESEEEREKWVEALRKAI 101
PH_unc89 cd13325
unc89 pleckstrin homology (PH) domain; unc89 is a myofibrillar protein. unc89-B the largest ...
1078-1177 6.25e-05

unc89 pleckstrin homology (PH) domain; unc89 is a myofibrillar protein. unc89-B the largest isoform is composed of 53 immunoglobulin (Ig) domains, 2 Fn3 domains, a triplet of SH3, DH and PH domains at its N-terminus, and 2 protein kinase domains (PK1 and PK2) at its C-terminus. unc-89 mutants display disorganization of muscle A-bands, and usually lack M-lines. The COOH-terminal region of obscurin, the human homolog of unc89, interacts via two specific Ig-like domains with the NH(2)-terminal Z-disk region of titin, a protein that connects the Z line to the M line in the sarcomere and contributes to the contraction of striated muscle. obscurin is also thought to be involved in Ca2+/calmodulin via its IQ domains, as well as G protein-coupled signal transduction in the sarcomere via its RhoGEF/DH domain. The DH-PH region of OBSCN and unc89, the C. elegans homolog, has exchange activity for RhoA and Rho-1 respectively, but not for the small GTPases homologous to Cdc42 or Rac. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 270134  Cd Length: 114  Bit Score: 43.49  E-value: 6.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498 1078 GQLLHRDPFTVICGRKKC-LRHVFLFEHLLLFSKLKGPEGGSEMFVYKQAFKTADMGLtENIGDSGLCFELWFRRRRAR- 1155
Cdd:cd13325      7 GRLLRHDWFTVTDGEGKAkERYLFLFKSRILITKVRRISEDRSVFILKDIIRLPEVNV-KQHPDDERTFELQPKLPAFGi 85
                           90       100
                   ....*....|....*....|..
gi 1034587498 1156 EAYTLQATSPEIKLKWTSSIAQ 1177
Cdd:cd13325     86 LPIDFKAHKDEIKDYWLNEIEE 107
PH cd00821
Pleckstrin homology (PH) domain; PH domains have diverse functions, but in general are ...
1077-1175 1.05e-04

Pleckstrin homology (PH) domain; PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.


Pssm-ID: 275388 [Multi-domain]  Cd Length: 92  Bit Score: 42.53  E-value: 1.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498 1077 QGQLLHRDPFTvICGRKKclRHVFLFEHLLLFSKlkgpeggSEMFVYKQAFKTADMGLTENI-----GDSGLCFELWFRR 1151
Cdd:cd00821      2 EGYLLKRGGGG-LKSWKK--RWFVLFEGVLLYYK-------SKKDSSYKPKGSIPLSGILEVeevspKERPHCFELVTPD 71
                           90       100
                   ....*....|....*....|....
gi 1034587498 1152 RRAreaYTLQATSPEIKLKWTSSI 1175
Cdd:cd00821     72 GRT---YYLQADSEEERQEWLKAL 92
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
566-769 5.07e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.44  E-value: 5.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  566 LYQEVDEAIHQLVRLSNLHVQQQEQRQCLRRLQQVlqwlsgpgEEQLASFAMPGDTLSALQETELRFRAFSAEVQERLAQ 645
Cdd:COG4913    223 TFEAADALVEHFDDLERAHEALEDAREQIELLEPI--------RELAERYAAARERLAELEYLRAALRLWFAQRRLELLE 294
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498  646 AREALALEENATSQKVLDIFEQRLEQVE---SGLHRALR---------LQRFFQQAHEWVDEGFARLAGAgpgrEAVLAA 713
Cdd:COG4913    295 AELEELRAELARLEAELERLEARLDALReelDELEAQIRgnggdrleqLEREIERLERELEERERRRARL----EALLAA 370
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1034587498  714 LALrrAPEPSAGTFQEMRALALDLgSPAALREWGRCQARCQELERRIQQHVGEEAS 769
Cdd:COG4913    371 LGL--PLPASAEEFAALRAEAAAL-LEALEEELEALEEALAEAEAALRDLRRELRE 423
PH pfam00169
PH domain; PH stands for pleckstrin homology.
1077-1175 5.79e-03

PH domain; PH stands for pleckstrin homology.


Pssm-ID: 459697 [Multi-domain]  Cd Length: 105  Bit Score: 37.93  E-value: 5.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1034587498 1077 QGQLLHRDPFTVIcGRKKclRHVFLFEHLLLFSKLKGPEGGSEMfVYKQAFKTADMGLTENIGDSG--LCFELWFRRRRA 1154
Cdd:pfam00169    4 EGWLLKKGGGKKK-SWKK--RYFVLFDGSLLYYKDDKSGKSKEP-KGSISLSGCEVVEVVASDSPKrkFCFELRTGERTG 79
                           90       100
                   ....*....|....*....|.
gi 1034587498 1155 REAYTLQATSPEIKLKWTSSI 1175
Cdd:pfam00169   80 KRTYLLQAESEEERKDWIKAI 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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