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Conserved domains on  [gi|1025246142|ref|XP_016487877|]
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PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X2 [Nicotiana tabacum]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1001808)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Gene Ontology:  GO:0003677
PubMed:  15591448

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FHY3 super family cl31971
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 47-657 4.54e-151

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


The actual alignment was detected with superfamily member PLN03097:

Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 458.69  E-value: 4.54e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142  47 QPTIGLEFGSFDEAYDFYNRYGKEQGFGIRVSNSWfRSK-RKERYRAKLSCSSAGFKKK--SGANHPR-------PETRT 116
Cdd:PLN03097   73 EPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSR-RSKtSREFIDAKFACSRYGTKREydKSFNRPRarqtkqdPENGT 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 117 G--------CPAMLVIKLADSKRWRIVEVELQHNHPVSPeVRRFYKSHKKMILADKKQqesipitevhtIKLYRTSIdaa 188
Cdd:PLN03097  152 GrrscaktdCKASMHVKRRPDGKWVIHSFVKEHNHELLP-AQAVSEQTRKMYAAMARQ-----------FAEYKNVV--- 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 189 cnGLQKikdkDSRFPVDTSKHLELKEGDANALYNYFCRMKLTNPNFFYLLDLDDQGCLRNVFWADARSRAAFNYFSDAVA 268
Cdd:PLN03097  217 --GLKN----DSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVS 290

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 269 IDTTSLRNKYVLPLISFVGVNNHGQPVLLGCGFLGHESVEYFIWMFKSWHTSMLGRHPQVIVTDQSKPLQIAVSKVFPQA 348
Cdd:PLN03097  291 FDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNA 370

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 349 RHCYCLSYIMQRVPEKLGGL-DGYESIKMQLYKAVYDSLKITEFESSWGQMISQHGLKDNKWLQSLYEDREKWVPVYLKD 427
Cdd:PLN03097  371 HHCFFLWHILGKVSENLGQViKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRD 450

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 428 ISFMGIIPITENESLNAYFDGYVHKHTSFKEFVDKYDLAMQRKHMKEAMADMESRSLSFELKTNCNFEVKLSKIFTKEIF 507
Cdd:PLN03097  451 AFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVF 530

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 508 KKFQAEVEGIYSCfNTRQVNINGPIMTFVVKErVESEGSevevklFEVLYETTQAEIRCICSLFNFKGYLCRHALNVLNY 587
Cdd:PLN03097  531 KKFQVEVLGAVAC-HPKMESQDETSITFRVQD-FEKNQD------FTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQM 602

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 588 NGVEEIPSQYILPRWDKDYKRKFPvdSGLCHIDVNNPVELYNILHKHVMQVVEEGVQSEEHYKAVLQEVE 657
Cdd:PLN03097  603 CQLSAIPSQYILKRWTKDAKSRHL--LGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALE 670
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 47-657 4.54e-151

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 458.69  E-value: 4.54e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142  47 QPTIGLEFGSFDEAYDFYNRYGKEQGFGIRVSNSWfRSK-RKERYRAKLSCSSAGFKKK--SGANHPR-------PETRT 116
Cdd:PLN03097   73 EPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSR-RSKtSREFIDAKFACSRYGTKREydKSFNRPRarqtkqdPENGT 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 117 G--------CPAMLVIKLADSKRWRIVEVELQHNHPVSPeVRRFYKSHKKMILADKKQqesipitevhtIKLYRTSIdaa 188
Cdd:PLN03097  152 GrrscaktdCKASMHVKRRPDGKWVIHSFVKEHNHELLP-AQAVSEQTRKMYAAMARQ-----------FAEYKNVV--- 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 189 cnGLQKikdkDSRFPVDTSKHLELKEGDANALYNYFCRMKLTNPNFFYLLDLDDQGCLRNVFWADARSRAAFNYFSDAVA 268
Cdd:PLN03097  217 --GLKN----DSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVS 290

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 269 IDTTSLRNKYVLPLISFVGVNNHGQPVLLGCGFLGHESVEYFIWMFKSWHTSMLGRHPQVIVTDQSKPLQIAVSKVFPQA 348
Cdd:PLN03097  291 FDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNA 370

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 349 RHCYCLSYIMQRVPEKLGGL-DGYESIKMQLYKAVYDSLKITEFESSWGQMISQHGLKDNKWLQSLYEDREKWVPVYLKD 427
Cdd:PLN03097  371 HHCFFLWHILGKVSENLGQViKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRD 450

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 428 ISFMGIIPITENESLNAYFDGYVHKHTSFKEFVDKYDLAMQRKHMKEAMADMESRSLSFELKTNCNFEVKLSKIFTKEIF 507
Cdd:PLN03097  451 AFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVF 530

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 508 KKFQAEVEGIYSCfNTRQVNINGPIMTFVVKErVESEGSevevklFEVLYETTQAEIRCICSLFNFKGYLCRHALNVLNY 587
Cdd:PLN03097  531 KKFQVEVLGAVAC-HPKMESQDETSITFRVQD-FEKNQD------FTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQM 602

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 588 NGVEEIPSQYILPRWDKDYKRKFPvdSGLCHIDVNNPVELYNILHKHVMQVVEEGVQSEEHYKAVLQEVE 657
Cdd:PLN03097  603 CQLSAIPSQYILKRWTKDAKSRHL--LGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALE 670
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 62-147 8.91e-27

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 104.34  E-value: 8.91e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142  62 DFYNRYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSG----ANHPRPETRTGCPAMLVIKLADSKRWRIVEV 137
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQrtgeARRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80

                          90
                  ....*....|
gi 1025246142 138 ELQHNHPVSP 147
Cdd:pfam03101  81 VKEHNHELLP 90
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
566-591 4.83e-05

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 40.62  E-value: 4.83e-05
                           10        20
                   ....*....|....*....|....*.
gi 1025246142  566 CICSLFNFKGYLCRHALNVLNYNGVE 591
Cdd:smart00575   3 CSCRKFQLSGIPCRHALAAAIHIGLS 28
 
Name Accession Description Interval E-value
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 47-657 4.54e-151

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 458.69  E-value: 4.54e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142  47 QPTIGLEFGSFDEAYDFYNRYGKEQGFGIRVSNSWfRSK-RKERYRAKLSCSSAGFKKK--SGANHPR-------PETRT 116
Cdd:PLN03097   73 EPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSR-RSKtSREFIDAKFACSRYGTKREydKSFNRPRarqtkqdPENGT 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 117 G--------CPAMLVIKLADSKRWRIVEVELQHNHPVSPeVRRFYKSHKKMILADKKQqesipitevhtIKLYRTSIdaa 188
Cdd:PLN03097  152 GrrscaktdCKASMHVKRRPDGKWVIHSFVKEHNHELLP-AQAVSEQTRKMYAAMARQ-----------FAEYKNVV--- 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 189 cnGLQKikdkDSRFPVDTSKHLELKEGDANALYNYFCRMKLTNPNFFYLLDLDDQGCLRNVFWADARSRAAFNYFSDAVA 268
Cdd:PLN03097  217 --GLKN----DSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVS 290

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 269 IDTTSLRNKYVLPLISFVGVNNHGQPVLLGCGFLGHESVEYFIWMFKSWHTSMLGRHPQVIVTDQSKPLQIAVSKVFPQA 348
Cdd:PLN03097  291 FDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNA 370

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 349 RHCYCLSYIMQRVPEKLGGL-DGYESIKMQLYKAVYDSLKITEFESSWGQMISQHGLKDNKWLQSLYEDREKWVPVYLKD 427
Cdd:PLN03097  371 HHCFFLWHILGKVSENLGQViKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRD 450

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 428 ISFMGIIPITENESLNAYFDGYVHKHTSFKEFVDKYDLAMQRKHMKEAMADMESRSLSFELKTNCNFEVKLSKIFTKEIF 507
Cdd:PLN03097  451 AFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVF 530

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 508 KKFQAEVEGIYSCfNTRQVNINGPIMTFVVKErVESEGSevevklFEVLYETTQAEIRCICSLFNFKGYLCRHALNVLNY 587
Cdd:PLN03097  531 KKFQVEVLGAVAC-HPKMESQDETSITFRVQD-FEKNQD------FTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQM 602

                         570       580       590       600       610       620       630
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 588 NGVEEIPSQYILPRWDKDYKRKFPvdSGLCHIDVNNPVELYNILHKHVMQVVEEGVQSEEHYKAVLQEVE 657
Cdd:PLN03097  603 CQLSAIPSQYILKRWTKDAKSRHL--LGEESEQVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALE 670
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 62-147 8.91e-27

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 104.34  E-value: 8.91e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142  62 DFYNRYGKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSG----ANHPRPETRTGCPAMLVIKLADSKRWRIVEV 137
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQrtgeARRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80

                          90
                  ....*....|
gi 1025246142 138 ELQHNHPVSP 147
Cdd:pfam03101  81 VKEHNHELLP 90
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 269-359 4.48e-24

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 96.95  E-value: 4.48e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1025246142 269 IDTTSLRNKYVLPLISFVGVNNHGQPVLLGCGFLGHESVEYFIWMF---KSWHTSMLGRHPQVIVTDQSKPLQIAVSKVF 345
Cdd:pfam10551   4 IDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNETEESFTWLFdqlIAFRECMSGLSPQVIITDRDKALKNAINLVF 83

                          90
                  ....*....|....
gi 1025246142 346 PQARHCYCLSYIMQ 359
Cdd:pfam10551  84 PEAQHRLCIFHINK 97
ZnF_PMZ smart00575
plant mutator transposase zinc finger;
566-591 4.83e-05

plant mutator transposase zinc finger;


Pssm-ID: 128845  Cd Length: 28  Bit Score: 40.62  E-value: 4.83e-05
                           10        20
                   ....*....|....*....|....*.
gi 1025246142  566 CICSLFNFKGYLCRHALNVLNYNGVE 591
Cdd:smart00575   3 CSCRKFQLSGIPCRHALAAAIHIGLS 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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