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Conserved domains on  [gi|1021528681|ref|XP_016207781|]
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myb-related protein 315 [Arachis ipaensis]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 1-145 1.76e-67

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 216.77  E-value: 1.76e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021528681   1 MGRQPCCEKVGLKRGPWTIEEDHKLMNFILNNGILCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQ 80
Cdd:PLN03091    1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1021528681  81 LHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKQIEQKEqtdDDEDKNNNT 145
Cdd:PLN03091   81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVE---NGEDKNPPT 142
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-145 1.76e-67

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 216.77  E-value: 1.76e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021528681   1 MGRQPCCEKVGLKRGPWTIEEDHKLMNFILNNGILCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQ 80
Cdd:PLN03091    1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1021528681  81 LHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKQIEQKEqtdDDEDKNNNT 145
Cdd:PLN03091   81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVE---NGEDKNPPT 142
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-110 5.53e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 67.53  E-value: 5.53e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1021528681  67 RGGFTEMEEDQIIQLHSRLGNRWSKIASHFPGRTDNEIKNHWNT 110
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 9-145 1.39e-13

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 70.20  E-value: 1.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021528681   9 KVGLKRGPWTIEEDHKLMNFILNNGILCWRMVPKLAGLlRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSRLGNR 88
Cdd:COG5147    15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1021528681  89 WSKIASHFPGRTDNEIKNHWNTRIKKRLKllgldpvTHKQIEQKEQTDDDEDKNNNT 145
Cdd:COG5147    94 WSTIADYKDRRTAQQCVERYVNTLEDLSS-------THDSKLQRRNEFDKIDPFNEN 143
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
67-114 5.76e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.46  E-value: 5.76e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1021528681   67 RGGFTEMEEDQIIQLHSRLG-NRWSKIASHFPGRTDNEIKNHWNTRIKK 114
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 70-110 8.74e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.04  E-value: 8.74e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1021528681  70 FTEMEEDQIIQLHSRLG-NRWSKIASHFPGRTDNEIKNHWNT 110
Cdd:cd00167     2 WTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRN 43
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-145 1.76e-67

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 216.77  E-value: 1.76e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021528681   1 MGRQPCCEKVGLKRGPWTIEEDHKLMNFILNNGILCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQ 80
Cdd:PLN03091    1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1021528681  81 LHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKQIEQKEqtdDDEDKNNNT 145
Cdd:PLN03091   81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVE---NGEDKNPPT 142
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 5-140 1.38e-56

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 182.20  E-value: 1.38e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021528681   5 PCCEKVGLKRGPWTIEEDHKLMNFILNNGILCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSR 84
Cdd:PLN03212   16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRL 95

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1021528681  85 LGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHKQIEQKEQTDDDED 140
Cdd:PLN03212   96 LGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDANNIHKPEEE 151
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 67-110 5.53e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 67.53  E-value: 5.53e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1021528681  67 RGGFTEMEEDQIIQLHSRLGNRWSKIASHFPGRTDNEIKNHWNT 110
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQN 44
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 9-145 1.39e-13

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 70.20  E-value: 1.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1021528681   9 KVGLKRGPWTIEEDHKLMNFILNNGILCWRMVPKLAGLlRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSRLGNR 88
Cdd:COG5147    15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ 93

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1021528681  89 WSKIASHFPGRTDNEIKNHWNTRIKKRLKllgldpvTHKQIEQKEQTDDDEDKNNNT 145
Cdd:COG5147    94 WSTIADYKDRRTAQQCVERYVNTLEDLSS-------THDSKLQRRNEFDKIDPFNEN 143
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
67-114 5.76e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.46  E-value: 5.76e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1021528681   67 RGGFTEMEEDQIIQLHSRLG-NRWSKIASHFPGRTDNEIKNHWNTRIKK 114
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 70-110 8.74e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 56.04  E-value: 8.74e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1021528681  70 FTEMEEDQIIQLHSRLG-NRWSKIASHFPGRTDNEIKNHWNT 110
Cdd:cd00167     2 WTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRN 43
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-61 4.59e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 45.57  E-value: 4.59e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1021528681  14 RGPWTIEEDHKLMNFILNNGIlCWRMVPKLAGLlRCGKSCRLRWINYL 61
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN-RWKKIAKLLPG-RTDNQCKNRWQNYL 46
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 70-117 2.86e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 43.84  E-value: 2.86e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1021528681  70 FTEMEEDQIIQLHSRLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLK 117
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKIS 48
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-63 3.61e-04

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 37.59  E-value: 3.61e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1021528681   14 RGPWTIEEDHKLMNFILNNGILCWRMVPKLAGLlRCGKSCRLRWINYLRP 63
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-78 4.13e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 37.67  E-value: 4.13e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1021528681  17 WTIEEDHKLMNFILNNGiLCWRMVPKLAGLlRCGKSCRLRWINYLRPDLKRGGFTEMEEDQI 78
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGR-RTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 16-61 1.16e-03

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 36.01  E-value: 1.16e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1021528681  16 PWTIEEDHKLMNFILNNGILCWRMVPKLAGLlRCGKSCRLRWINYL 61
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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