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Conserved domains on  [gi|1012009911|ref|XP_015947911|]
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NAC domain-containing protein 43 [Arachis duranensis]

Protein Classification

NAC family transcription factor( domain architecture ID 10492350)

NAC family transcription factor such as Arabidopsis thaliana CUP-SHAPED COTYLEDON proteins that are involved in regulating shoot apical meristem formation during embryogenesis and organ separation, and to Hordeum vulgare NAM proteins that are associated with grain protein content

Gene Ontology:  GO:0043565|GO:0006950
PubMed:  36909440

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NAM pfam02365
No apical meristem (NAM) protein; This is a family of no apical meristem (NAM) proteins these ...
 16-143 2.72e-73

No apical meristem (NAM) protein; This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals.


:

Pssm-ID: 460539  Cd Length: 122  Bit Score: 226.32  E-value: 2.72e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012009911  16 PPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTtpqNDWYFFSHKDKKYPTGTRTNRATa 95
Cdd:pfam02365   1 PPGFRFHPTDEELVTHYLRRKVLGKPLPLDFIPEVDLYKLEPWDLPGKAKGGG---NEWYFFSPRDRKYPNGSRTNRAT- 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1012009911  96 AGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRapHGQKSDWIMHEYRL 143
Cdd:pfam02365  77 GGYWKATGKDKPIKSNGVLVGMKKTLVFYKGR--KGEKTGWVMHEYRL 122
 
Name Accession Description Interval E-value
NAM pfam02365
No apical meristem (NAM) protein; This is a family of no apical meristem (NAM) proteins these ...
 16-143 2.72e-73

No apical meristem (NAM) protein; This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals.


Pssm-ID: 460539  Cd Length: 122  Bit Score: 226.32  E-value: 2.72e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012009911  16 PPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTtpqNDWYFFSHKDKKYPTGTRTNRATa 95
Cdd:pfam02365   1 PPGFRFHPTDEELVTHYLRRKVLGKPLPLDFIPEVDLYKLEPWDLPGKAKGGG---NEWYFFSPRDRKYPNGSRTNRAT- 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1012009911  96 AGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRapHGQKSDWIMHEYRL 143
Cdd:pfam02365  77 GGYWKATGKDKPIKSNGVLVGMKKTLVFYKGR--KGEKTGWVMHEYRL 122
 
Name Accession Description Interval E-value
NAM pfam02365
No apical meristem (NAM) protein; This is a family of no apical meristem (NAM) proteins these ...
 16-143 2.72e-73

No apical meristem (NAM) protein; This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals.


Pssm-ID: 460539  Cd Length: 122  Bit Score: 226.32  E-value: 2.72e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1012009911  16 PPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTtpqNDWYFFSHKDKKYPTGTRTNRATa 95
Cdd:pfam02365   1 PPGFRFHPTDEELVTHYLRRKVLGKPLPLDFIPEVDLYKLEPWDLPGKAKGGG---NEWYFFSPRDRKYPNGSRTNRAT- 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 1012009911  96 AGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRapHGQKSDWIMHEYRL 143
Cdd:pfam02365  77 GGYWKATGKDKPIKSNGVLVGMKKTLVFYKGR--KGEKTGWVMHEYRL 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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