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Conserved domains on  [gi|1002260680|ref|XP_015634673|]
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receptor-like protein 56 [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00113 super family cl33413
leucine-rich repeat receptor-like protein kinase; Provisional
 4-110 6.86e-23

leucine-rich repeat receptor-like protein kinase; Provisional


The actual alignment was detected with superfamily member PLN00113:

Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 94.91  E-value: 6.86e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNL 83
Cdd:PLN00113  504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

                          90       100
                  ....*....|....*....|....*..
gi 1002260680  84 SGEIPFQQQLGTFDESAFEGNDNLCGE 110
Cdd:PLN00113  584 HGSLPSTGAFLAINASAVAGNIDLCGG 610
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 4-110 6.86e-23

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 94.91  E-value: 6.86e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNL 83
Cdd:PLN00113  504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

                          90       100
                  ....*....|....*....|....*..
gi 1002260680  84 SGEIPFQQQLGTFDESAFEGNDNLCGE 110
Cdd:PLN00113  584 HGSLPSTGAFLAINASAVAGNIDLCGG 610
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
4-88 4.54e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 63.41  E-value: 4.54e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSgAIPPPLGFLRQLKSLNLSHNQLVGpIPETFMYMQDMESLDLSYNHLNgSLPMQLANLSFLCSFNVAYNNL 83
Cdd:COG4886   141 LDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQL 217


                  ....*
gi 1002260680  84 SgEIP 88
Cdd:COG4886   218 T-DLP 221
LRR_8 pfam13855
Leucine rich repeat;
23-83 3.19e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 42.90  E-value: 3.19e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002260680  23 RQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNL 83
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
 
Name Accession Description Interval E-value
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 4-110 6.86e-23

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 94.91  E-value: 6.86e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNL 83
Cdd:PLN00113  504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

                          90       100
                  ....*....|....*....|....*..
gi 1002260680  84 SGEIPFQQQLGTFDESAFEGNDNLCGE 110
Cdd:PLN00113  584 HGSLPSTGAFLAINASAVAGNIDLCGG 610
PLN03150 PLN03150
hypothetical protein; Provisional
 3-109 4.06e-17

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 77.93  E-value: 4.06e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   3 GIDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNN 82
Cdd:PLN03150  422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

                          90       100
                  ....*....|....*....|....*....
gi 1002260680  83 LSGEIPFQQQLGTFDESAFEGNDN--LCG 109
Cdd:PLN03150  502 LSGRVPAALGGRLLHRASFNFTDNagLCG 530
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 4-88 5.16e-16

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 74.88  E-value: 5.16e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNL 83
Cdd:PLN00113  169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248


                  ....*
gi 1002260680  84 SGEIP 88
Cdd:PLN00113  249 TGPIP 253
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 6-118 8.02e-16

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 74.50  E-value: 8.02e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   6 LSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNLSG 85
Cdd:PLN00113  267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1002260680  86 EIPF----QQQLGTFDESAfegnDNLCGEIINKNCSS 118
Cdd:PLN00113  347 EIPKnlgkHNNLTVLDLST----NNLTGEIPEGLCSS 379
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 4-90 1.45e-14

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 70.65  E-value: 1.45e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNL 83
Cdd:PLN00113  145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224


                  ....*..
gi 1002260680  84 SGEIPFQ 90
Cdd:PLN00113  225 SGEIPYE 231
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 4-88 2.18e-14

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 70.26  E-value: 2.18e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLP---MQLANLSFLCSFNvay 80
Cdd:PLN00113  241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPelvIQLQNLEILHLFS--- 317


                  ....*...
gi 1002260680  81 NNLSGEIP 88
Cdd:PLN00113  318 NNFTGKIP 325
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 4-88 2.21e-14

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 70.26  E-value: 2.21e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSGAIPPPLGfLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNL 83
Cdd:PLN00113  457 LSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535


                  ....*
gi 1002260680  84 SGEIP 88
Cdd:PLN00113  536 SGQIP 540
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 4-88 2.15e-13

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 67.57  E-value: 2.15e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNL 83
Cdd:PLN00113  217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296


                  ....*
gi 1002260680  84 SGEIP 88
Cdd:PLN00113  297 SGEIP 301
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 6-111 1.06e-12

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 65.25  E-value: 1.06e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   6 LSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNLSG 85
Cdd:PLN00113  195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274

                          90       100       110
                  ....*....|....*....|....*....|
gi 1002260680  86 EIPFQ----QQLGTFDESafegNDNLCGEI 111
Cdd:PLN00113  275 PIPPSifslQKLISLDLS----DNSLSGEI 300
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 4-111 3.40e-12

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 64.10  E-value: 3.40e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSGAIPPplGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNL 83
Cdd:PLN00113  123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

                          90       100       110
                  ....*....|....*....|....*....|
gi 1002260680  84 SGEIPfqQQLGTFD--ESAFEGNDNLCGEI 111
Cdd:PLN00113  201 VGQIP--RELGQMKslKWIYLGYNNLSGEI 228
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
4-88 4.54e-12

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 63.41  E-value: 4.54e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSgAIPPPLGFLRQLKSLNLSHNQLVGpIPETFMYMQDMESLDLSYNHLNgSLPMQLANLSFLCSFNVAYNNL 83
Cdd:COG4886   141 LDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLTD-LPEELGNLTNLKELDLSNNQIT-DLPEPLGNLTNLEELDLSGNQL 217


                  ....*
gi 1002260680  84 SgEIP 88
Cdd:COG4886   218 T-DLP 221
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
2-88 1.63e-10

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 58.79  E-value: 1.63e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   2 TGIDLSMNQLSgAIPPPLGFLRQLKSLNLSHNQLvGPIPETFMYMQDMESLDLSYNHLNgSLPMQLANLSFLCSFNVAYN 81
Cdd:COG4886   116 ESLDLSGNQLT-DLPEELANLTNLKELDLSNNQL-TDLPEPLGNLTNLKSLDLSNNQLT-DLPEELGNLTNLKELDLSNN 192


                  ....*..
gi 1002260680  82 NLSgEIP 88
Cdd:COG4886   193 QIT-DLP 198
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 1-96 8.58e-10

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 56.78  E-value: 8.58e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   1 MTGIDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPET-FMYMQDMESLDLSYNHLNGSLPMqlANLSFLCSFNVA 79
Cdd:PLN00113   71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDiFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLS 148

                          90
                  ....*....|....*..
gi 1002260680  80 YNNLSGEIPfqQQLGTF 96
Cdd:PLN00113  149 NNMLSGEIP--NDIGSF 163
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
4-85 7.47e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 54.17  E-value: 7.47e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSgAIPPPLGFLRQLKSLNLSHNQLVgPIPEtFMYMQDMESLDLSYNHLNgSLPmQLANLSFLCSFNVAYNNL 83
Cdd:COG4886   210 LDLSGNQLT-DLPEPLANLTNLETLDLSNNQLT-DLPE-LGNLTNLEELDLSNNQLT-DLP-PLANLTNLKTLDLSNNQL 284


                  ..
gi 1002260680  84 SG 85
Cdd:COG4886   285 TD 286
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 9-88 3.33e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 52.16  E-value: 3.33e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   9 NQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNLSGEIP 88
Cdd:PLN00113  390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 1-87 7.51e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 51.39  E-value: 7.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   1 MTGIDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAY 80
Cdd:PLN00113  358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437


                  ....*..
gi 1002260680  81 NNLSGEI 87
Cdd:PLN00113  438 NNLQGRI 444
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 9-88 1.63e-07

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 50.23  E-value: 1.63e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   9 NQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNLSGEIP 88
Cdd:PLN00113  342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 9-88 2.03e-07

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 49.85  E-value: 2.03e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   9 NQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNLSGEIP 88
Cdd:PLN00113  318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
10-88 3.65e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 49.16  E-value: 3.65e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1002260680  10 QLSGAIPPPLGFLRQLKSLNLSHNQLVGpIPETFMYMQDMESLDLSYNHLNgSLPMQLANLSFLCSFNVAYNNLSgEIP 88
Cdd:COG4886   100 ELDLSGNEELSNLTNLESLDLSGNQLTD-LPEELANLTNLKELDLSNNQLT-DLPEPLGNLTNLKSLDLSNNQLT-DLP 175
LRR_8 pfam13855
Leucine rich repeat;
23-83 3.19e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 42.90  E-value: 3.19e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1002260680  23 RQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNL 83
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 1-40 3.99e-05

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 43.27  E-value: 3.99e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1002260680   1 MTGIDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIP 40
Cdd:PLN03150  468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 24-113 9.47e-05

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 42.14  E-value: 9.47e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680  24 QLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHLNGSLPMQLANLSF-LCSFNVAYNNLSGEIP--FQQQLGTFDESa 100
Cdd:PLN00113   70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSsLRYLNLSNNNFTGSIPrgSIPNLETLDLS- 148

                          90
                  ....*....|...
gi 1002260680 101 fegNDNLCGEIIN 113
Cdd:PLN00113  149 ---NNMLSGEIPN 158
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
4-89 1.28e-04

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 41.46  E-value: 1.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   4 IDLSMNQLSGAipPPLGFLRQLKSLNLSHNQLVGpIPETFmYMQDMESLDLSYNHLNGSLPMQLANLSFLCSFNVAYNNL 83
Cdd:COG4886   233 LDLSNNQLTDL--PELGNLTNLEELDLSNNQLTD-LPPLA-NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLL 308


                  ....*.
gi 1002260680  84 SGEIPF 89
Cdd:COG4886   309 NLLELL 314
LRR_8 pfam13855
Leucine rich repeat;
4-59 1.40e-04

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 38.27  E-value: 1.40e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1002260680   4 IDLSMNQLSGAIPPPLGFLRQLKSLNLSHNQLVGPIPETFMYMQDMESLDLSYNHL 59
Cdd:pfam13855   6 LDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
RNA1 COG5238
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ...
 2-86 2.83e-04

Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];


Pssm-ID: 444072 [Multi-domain]  Cd Length: 434  Bit Score: 40.54  E-value: 2.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680   2 TGIDLSMNQLSG----AIPPPLGFLRQLKSLNLSHNQLVGP----IPETFMYMQDMESLDLSYNHLNG----SLPMQLAN 69
Cdd:COG5238   239 TTLDLSNNQIGDegviALAEALKNNTTVETLYLSGNQIGAEgaiaLAKALQGNTTLTSLDLSVNRIGDegaiALAEGLQG 318

                          90
                  ....*....|....*..
gi 1002260680  70 LSFLCSFNVAYNNLSGE 86
Cdd:COG5238   319 NKTLHTLNLAYNGIGAQ 335
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
19-88 8.67e-04

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 39.15  E-value: 8.67e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1002260680  19 LGFLRQLKSLNLSHNQLVGpipetfmYMQDMESLDLSYNHLNgSLPMQLANLSFLCSFNVAYNNLSgEIP 88
Cdd:COG4886    92 LGDLTNLTELDLSGNEELS-------NLTNLESLDLSGNQLT-DLPEELANLTNLKELDLSNNQLT-DLP 152
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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