PREDICTED: uncharacterized protein K02A2.6-like, partial [Gekko japonicus]
transposase( domain architecture ID 16054042)
transposase binds to the end of a transposon and catalyzes the movement of the transposon to another part of the genome by a cut and paste mechanism or a replicative transposition mechanism
List of domain hits
Name | Accession | Description | Interval | E-value | |||
transpos_IS481 super family | cl41329 | IS481 family transposase; null |
105-206 | 8.41e-20 | |||
IS481 family transposase; null The actual alignment was detected with superfamily member NF033577: Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 88.80 E-value: 8.41e-20
|
|||||||
Integrase_H2C2 | pfam17921 | Integrase zinc binding domain; This zinc binding domain is found in a wide variety of ... |
31-86 | 3.50e-18 | |||
Integrase zinc binding domain; This zinc binding domain is found in a wide variety of integrase proteins. : Pssm-ID: 465569 [Multi-domain] Cd Length: 58 Bit Score: 78.06 E-value: 3.50e-18
|
|||||||
Herpes_BLLF1 super family | cl37540 | Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
330-417 | 1.80e-03 | |||
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. The actual alignment was detected with superfamily member pfam05109: Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 40.67 E-value: 1.80e-03
|
|||||||
Name | Accession | Description | Interval | E-value | |||
transpos_IS481 | NF033577 | IS481 family transposase; null |
105-206 | 8.41e-20 | |||
IS481 family transposase; null Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 88.80 E-value: 8.41e-20
|
|||||||
Integrase_H2C2 | pfam17921 | Integrase zinc binding domain; This zinc binding domain is found in a wide variety of ... |
31-86 | 3.50e-18 | |||
Integrase zinc binding domain; This zinc binding domain is found in a wide variety of integrase proteins. Pssm-ID: 465569 [Multi-domain] Cd Length: 58 Bit Score: 78.06 E-value: 3.50e-18
|
|||||||
rve | pfam00665 | Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
91-191 | 1.56e-14 | |||
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site. Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 68.88 E-value: 1.56e-14
|
|||||||
Tra5 | COG2801 | Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
138-210 | 1.59e-08 | |||
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 55.54 E-value: 1.59e-08
|
|||||||
transpos_IS3 | NF033516 | IS3 family transposase; |
142-210 | 6.43e-06 | |||
IS3 family transposase; Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 47.95 E-value: 6.43e-06
|
|||||||
Herpes_BLLF1 | pfam05109 | Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
330-417 | 1.80e-03 | |||
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 40.67 E-value: 1.80e-03
|
|||||||
PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
337-416 | 2.10e-03 | |||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.69 E-value: 2.10e-03
|
|||||||
PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
335-412 | 9.87e-03 | |||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 38.21 E-value: 9.87e-03
|
|||||||
Name | Accession | Description | Interval | E-value | |||
transpos_IS481 | NF033577 | IS481 family transposase; null |
105-206 | 8.41e-20 | |||
IS481 family transposase; null Pssm-ID: 468094 [Multi-domain] Cd Length: 283 Bit Score: 88.80 E-value: 8.41e-20
|
|||||||
Integrase_H2C2 | pfam17921 | Integrase zinc binding domain; This zinc binding domain is found in a wide variety of ... |
31-86 | 3.50e-18 | |||
Integrase zinc binding domain; This zinc binding domain is found in a wide variety of integrase proteins. Pssm-ID: 465569 [Multi-domain] Cd Length: 58 Bit Score: 78.06 E-value: 3.50e-18
|
|||||||
rve | pfam00665 | Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into ... |
91-191 | 1.56e-14 | |||
Integrase core domain; Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site. Pssm-ID: 459897 [Multi-domain] Cd Length: 98 Bit Score: 68.88 E-value: 1.56e-14
|
|||||||
Tra5 | COG2801 | Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; |
138-210 | 1.59e-08 | |||
Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; Pssm-ID: 442053 [Multi-domain] Cd Length: 309 Bit Score: 55.54 E-value: 1.59e-08
|
|||||||
transpos_IS3 | NF033516 | IS3 family transposase; |
142-210 | 6.43e-06 | |||
IS3 family transposase; Pssm-ID: 468052 [Multi-domain] Cd Length: 369 Bit Score: 47.95 E-value: 6.43e-06
|
|||||||
zf-H2C2 | pfam09337 | H2C2 zinc finger; This domain binds to histone upstream activating sequence (UAS) elements ... |
41-81 | 7.30e-05 | |||
H2C2 zinc finger; This domain binds to histone upstream activating sequence (UAS) elements that are found in histone gene promoters. Pssm-ID: 430537 Cd Length: 39 Bit Score: 39.62 E-value: 7.30e-05
|
|||||||
Herpes_BLLF1 | pfam05109 | Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
330-417 | 1.80e-03 | |||
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 40.67 E-value: 1.80e-03
|
|||||||
PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
337-416 | 2.10e-03 | |||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 40.69 E-value: 2.10e-03
|
|||||||
PRK14951 | PRK14951 | DNA polymerase III subunits gamma and tau; Provisional |
330-417 | 5.51e-03 | |||
DNA polymerase III subunits gamma and tau; Provisional Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 38.93 E-value: 5.51e-03
|
|||||||
PHA03247 | PHA03247 | large tegument protein UL36; Provisional |
327-417 | 7.04e-03 | |||
large tegument protein UL36; Provisional Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.15 E-value: 7.04e-03
|
|||||||
PTZ00144 | PTZ00144 | dihydrolipoamide succinyltransferase; Provisional |
345-416 | 8.98e-03 | |||
dihydrolipoamide succinyltransferase; Provisional Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 38.12 E-value: 8.98e-03
|
|||||||
PspC_subgroup_2 | NF033839 | pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
335-412 | 9.87e-03 | |||
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 38.21 E-value: 9.87e-03
|
|||||||
Blast search parameters | ||||
|