|
Name |
Accession |
Description |
Interval |
E-value |
| THRAP3_BCLAF1 |
pfam15440 |
THRAP3/BCLAF1 family; This family includes thyroid hormone receptor-associated protein 3 ... |
178-791 |
3.95e-135 |
|
THRAP3/BCLAF1 family; This family includes thyroid hormone receptor-associated protein 3 (THRAP3), which is a spliceosome component and a subunit of the TRAP complex which plays a role in pre-mRNA splicing and in mRNA decay. It also includes the transcriptional repressor Bcl-2-associated transcription factor 1 (BCLAF1).
:
Pssm-ID: 464718 Cd Length: 641 Bit Score: 420.34 E-value: 3.95e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 178 VKQHNAAQKEARASLPPAQVSQGAESKakppadatSNDSKDPEAiSKPWkgltaydsspkhpssvvhsvnasglnspphp 257
Cdd:pfam15440 55 MDDKKHGQKDPRISPHGNDHNRSYEHR--------SPDAKSSEA-SKSW------------------------------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 258 SPIQKSPLQSVAVKRSPPQKSPQSHSPAGPSSLRQSPVPPIPPlRTVPRQSPQAHSPKRSSPAERSPVRKSPPIISTSYN 337
Cdd:pfam15440 95 SPKRRSPLESVYVYKPSPRPSPERGDSSRRDQYMPKPSEPSPY-QYSPKQQGRYHGRGRGSPKGGSPPRRSPADSFSFEG 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 338 NAQKEE------SRAGESTSPLVSSYLKRYLEEQKNKATTQDRENGREKDQKAKNEEREKVKERSGVSEMGV--PFFKSD 409
Cdd:pfam15440 174 KWHEDElrhqqsPRRGSEEFSARSSFQKRYPEEQDFRKYGHTSERGKEKEQKDARYEKREPARNSKWKDEHSlpPYQEKD 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 410 YLAPKNESESLYRGIPSPRRYRYSNELEKSMSaefqeealhsmdmqESEKKHRVKGLKDSKLEDEPKCKSKvIVPSTAKN 489
Cdd:pfam15440 254 DQRNKGPQSSRYAERESPESYDYRHKFEKKLA--------------EFEKDFSDGRTEKYEKEDRKKFSSK-ISKGNRES 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 490 QDTYEERLSKWEELAYFPSAKEKSWEDE-----DMEDEVYPGR--AKREEVKRAELGGYRgpipdKNPRSGSYKVvhers 562
Cdd:pfam15440 319 DCFSEGRGRKTEEGQVEPSAKEKSKKDEiactdSMENDVYLERfnDKKEEKSKKEGDFRK-----EAELSSSSQH----- 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 563 psppprrsaeGKEREKMATKEENPpisKTTFSVYRGSEINVRMDALEDDF---GSSVAHERRLSRDLVHGNKKDLGFRSI 639
Cdd:pfam15440 389 ----------DDSREKPDVKESSP---KSVFSIKRESTVKVDMDKFDEDLarpSSSLAQERQLSRDLVHSGKKDQEFRSI 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 640 FQHIQSSQSRRSPSELFAQHIVTIVHHVKEHHFESPEMTLSERFTMYQRRAMEQGAARSKKSPEFHRRIDISPSAFRKHP 719
Cdd:pfam15440 456 FEHIQSQQSERSPSEEFAQHIVTIVHHVKAHYFPSSGMTLHERFSKYQKRAAEQEEMKSNKSPEIHRRIDMSPSALRKHR 535
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 942123136 720 FLQDEMKGSRESSSykGEGKYKEDPVDLRLDIERRKKY--KERDHKRDGSRESVDSRDSSQSRERsTEKAQREH 791
Cdd:pfam15440 536 TLFEESKQSKESSY--KEGKVKEDPNDLRHDIERRRKErlKERDEKRFHIRDSQDSRFSSLSRER-TEKFQKPH 606
|
|
| Btz super family |
cl09653 |
CASC3/Barentsz eIF4AIII binding; This domain is found on CASC3 (cancer susceptibility ... |
865-950 |
2.63e-03 |
|
CASC3/Barentsz eIF4AIII binding; This domain is found on CASC3 (cancer susceptibility candidate gene 3 protein) which is also known as Barentsz (Btz). CASC3 is a component of the EJC (exon junction complex) which is a complex that is involved in post-transcriptional regulation of mRNA in metazoa. The complex is formed by the association of four proteins (eIF4AIII, Barentsz, Mago, and Y14), mRNA, and ATP. This domain wraps around eIF4AIII and stacks against the 5' nucleotide.
The actual alignment was detected with superfamily member pfam09405:
Pssm-ID: 447763 [Multi-domain] Cd Length: 121 Bit Score: 38.65 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 865 GKGRGWPRVMYPGNASSDFQRRNRDEEW-------DPEYTPKSKKYYLHDDREGEGGEKWANRGRGRGqfqRGRGRFLYR 937
Cdd:pfam09405 5 ESQSGRTPSAPPTEPKEDAERKRREHEKyekerdeNPAFVPTRGAFFLHDDRFAEPAANGFGKSKGRP---YGRRRRLWD 81
|
90
....*....|...
gi 942123136 938 KSSDSpKWTHDKY 950
Cdd:pfam09405 82 DASEG-KWTHDLF 93
|
|
| Cyano_gly_rpt |
TIGR04260 |
rSAM-associated Gly-rich repeat protein; Members of this protein family average 125 in length, ... |
76-115 |
5.05e-03 |
|
rSAM-associated Gly-rich repeat protein; Members of this protein family average 125 in length, roughly half of which is the repetitive and extremely Gly-rich C-terminal region. Virtually all members occur in the Cyanobacteria, in a neighborhood that includes a radical SAM/SPASM domain, often a marker of peptide modification systems.
:
Pssm-ID: 275087 [Multi-domain] Cd Length: 119 Bit Score: 37.80 E-value: 5.05e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 942123136 76 RGYNRGYRRPFFNRGRGRGF-HQRGQYNRGGYGNyRSNWQN 115
Cdd:TIGR04260 71 RGWGNGGGRGWGNGGGGGGWgNGGGGWGNGGWVN-GGGWRN 110
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| THRAP3_BCLAF1 |
pfam15440 |
THRAP3/BCLAF1 family; This family includes thyroid hormone receptor-associated protein 3 ... |
178-791 |
3.95e-135 |
|
THRAP3/BCLAF1 family; This family includes thyroid hormone receptor-associated protein 3 (THRAP3), which is a spliceosome component and a subunit of the TRAP complex which plays a role in pre-mRNA splicing and in mRNA decay. It also includes the transcriptional repressor Bcl-2-associated transcription factor 1 (BCLAF1).
Pssm-ID: 464718 Cd Length: 641 Bit Score: 420.34 E-value: 3.95e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 178 VKQHNAAQKEARASLPPAQVSQGAESKakppadatSNDSKDPEAiSKPWkgltaydsspkhpssvvhsvnasglnspphp 257
Cdd:pfam15440 55 MDDKKHGQKDPRISPHGNDHNRSYEHR--------SPDAKSSEA-SKSW------------------------------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 258 SPIQKSPLQSVAVKRSPPQKSPQSHSPAGPSSLRQSPVPPIPPlRTVPRQSPQAHSPKRSSPAERSPVRKSPPIISTSYN 337
Cdd:pfam15440 95 SPKRRSPLESVYVYKPSPRPSPERGDSSRRDQYMPKPSEPSPY-QYSPKQQGRYHGRGRGSPKGGSPPRRSPADSFSFEG 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 338 NAQKEE------SRAGESTSPLVSSYLKRYLEEQKNKATTQDRENGREKDQKAKNEEREKVKERSGVSEMGV--PFFKSD 409
Cdd:pfam15440 174 KWHEDElrhqqsPRRGSEEFSARSSFQKRYPEEQDFRKYGHTSERGKEKEQKDARYEKREPARNSKWKDEHSlpPYQEKD 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 410 YLAPKNESESLYRGIPSPRRYRYSNELEKSMSaefqeealhsmdmqESEKKHRVKGLKDSKLEDEPKCKSKvIVPSTAKN 489
Cdd:pfam15440 254 DQRNKGPQSSRYAERESPESYDYRHKFEKKLA--------------EFEKDFSDGRTEKYEKEDRKKFSSK-ISKGNRES 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 490 QDTYEERLSKWEELAYFPSAKEKSWEDE-----DMEDEVYPGR--AKREEVKRAELGGYRgpipdKNPRSGSYKVvhers 562
Cdd:pfam15440 319 DCFSEGRGRKTEEGQVEPSAKEKSKKDEiactdSMENDVYLERfnDKKEEKSKKEGDFRK-----EAELSSSSQH----- 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 563 psppprrsaeGKEREKMATKEENPpisKTTFSVYRGSEINVRMDALEDDF---GSSVAHERRLSRDLVHGNKKDLGFRSI 639
Cdd:pfam15440 389 ----------DDSREKPDVKESSP---KSVFSIKRESTVKVDMDKFDEDLarpSSSLAQERQLSRDLVHSGKKDQEFRSI 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 640 FQHIQSSQSRRSPSELFAQHIVTIVHHVKEHHFESPEMTLSERFTMYQRRAMEQGAARSKKSPEFHRRIDISPSAFRKHP 719
Cdd:pfam15440 456 FEHIQSQQSERSPSEEFAQHIVTIVHHVKAHYFPSSGMTLHERFSKYQKRAAEQEEMKSNKSPEIHRRIDMSPSALRKHR 535
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 942123136 720 FLQDEMKGSRESSSykGEGKYKEDPVDLRLDIERRKKY--KERDHKRDGSRESVDSRDSSQSRERsTEKAQREH 791
Cdd:pfam15440 536 TLFEESKQSKESSY--KEGKVKEDPNDLRHDIERRRKErlKERDEKRFHIRDSQDSRFSSLSRER-TEKFQKPH 606
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
183-344 |
7.37e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.87 E-value: 7.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 183 AAQKEARASLPPAQVSQGAESKAKPPADATSNDSK-------DPEAISKPWKGLTAYDSSPKHPSSVVHSVNASGLNSPP 255
Cdd:PHA03247 2761 PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESReslpspwDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP 2840
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 256 HPSPIQKSPLQ---SVA----VKRSPPQKSPQShSPAGPSSLR---------------------QSPVPPIPPLRTVPRQ 307
Cdd:PHA03247 2841 PPPGPPPPSLPlggSVApggdVRRRPPSRSPAA-KPAAPARPPvrrlarpavsrstesfalppdQPERPPQPQAPPPPQP 2919
|
170 180 190
....*....|....*....|....*....|....*..
gi 942123136 308 SPQAHSPKRSSPAERSPVRKSPPIISTSYNNAQKEES 344
Cdd:PHA03247 2920 QPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS 2956
|
|
| Btz |
pfam09405 |
CASC3/Barentsz eIF4AIII binding; This domain is found on CASC3 (cancer susceptibility ... |
865-950 |
2.63e-03 |
|
CASC3/Barentsz eIF4AIII binding; This domain is found on CASC3 (cancer susceptibility candidate gene 3 protein) which is also known as Barentsz (Btz). CASC3 is a component of the EJC (exon junction complex) which is a complex that is involved in post-transcriptional regulation of mRNA in metazoa. The complex is formed by the association of four proteins (eIF4AIII, Barentsz, Mago, and Y14), mRNA, and ATP. This domain wraps around eIF4AIII and stacks against the 5' nucleotide.
Pssm-ID: 430588 [Multi-domain] Cd Length: 121 Bit Score: 38.65 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 865 GKGRGWPRVMYPGNASSDFQRRNRDEEW-------DPEYTPKSKKYYLHDDREGEGGEKWANRGRGRGqfqRGRGRFLYR 937
Cdd:pfam09405 5 ESQSGRTPSAPPTEPKEDAERKRREHEKyekerdeNPAFVPTRGAFFLHDDRFAEPAANGFGKSKGRP---YGRRRRLWD 81
|
90
....*....|...
gi 942123136 938 KSSDSpKWTHDKY 950
Cdd:pfam09405 82 DASEG-KWTHDLF 93
|
|
| Cyano_gly_rpt |
TIGR04260 |
rSAM-associated Gly-rich repeat protein; Members of this protein family average 125 in length, ... |
76-115 |
5.05e-03 |
|
rSAM-associated Gly-rich repeat protein; Members of this protein family average 125 in length, roughly half of which is the repetitive and extremely Gly-rich C-terminal region. Virtually all members occur in the Cyanobacteria, in a neighborhood that includes a radical SAM/SPASM domain, often a marker of peptide modification systems.
Pssm-ID: 275087 [Multi-domain] Cd Length: 119 Bit Score: 37.80 E-value: 5.05e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 942123136 76 RGYNRGYRRPFFNRGRGRGF-HQRGQYNRGGYGNyRSNWQN 115
Cdd:TIGR04260 71 RGWGNGGGRGWGNGGGGGGWgNGGGGWGNGGWVN-GGGWRN 110
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| THRAP3_BCLAF1 |
pfam15440 |
THRAP3/BCLAF1 family; This family includes thyroid hormone receptor-associated protein 3 ... |
178-791 |
3.95e-135 |
|
THRAP3/BCLAF1 family; This family includes thyroid hormone receptor-associated protein 3 (THRAP3), which is a spliceosome component and a subunit of the TRAP complex which plays a role in pre-mRNA splicing and in mRNA decay. It also includes the transcriptional repressor Bcl-2-associated transcription factor 1 (BCLAF1).
Pssm-ID: 464718 Cd Length: 641 Bit Score: 420.34 E-value: 3.95e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 178 VKQHNAAQKEARASLPPAQVSQGAESKakppadatSNDSKDPEAiSKPWkgltaydsspkhpssvvhsvnasglnspphp 257
Cdd:pfam15440 55 MDDKKHGQKDPRISPHGNDHNRSYEHR--------SPDAKSSEA-SKSW------------------------------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 258 SPIQKSPLQSVAVKRSPPQKSPQSHSPAGPSSLRQSPVPPIPPlRTVPRQSPQAHSPKRSSPAERSPVRKSPPIISTSYN 337
Cdd:pfam15440 95 SPKRRSPLESVYVYKPSPRPSPERGDSSRRDQYMPKPSEPSPY-QYSPKQQGRYHGRGRGSPKGGSPPRRSPADSFSFEG 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 338 NAQKEE------SRAGESTSPLVSSYLKRYLEEQKNKATTQDRENGREKDQKAKNEEREKVKERSGVSEMGV--PFFKSD 409
Cdd:pfam15440 174 KWHEDElrhqqsPRRGSEEFSARSSFQKRYPEEQDFRKYGHTSERGKEKEQKDARYEKREPARNSKWKDEHSlpPYQEKD 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 410 YLAPKNESESLYRGIPSPRRYRYSNELEKSMSaefqeealhsmdmqESEKKHRVKGLKDSKLEDEPKCKSKvIVPSTAKN 489
Cdd:pfam15440 254 DQRNKGPQSSRYAERESPESYDYRHKFEKKLA--------------EFEKDFSDGRTEKYEKEDRKKFSSK-ISKGNRES 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 490 QDTYEERLSKWEELAYFPSAKEKSWEDE-----DMEDEVYPGR--AKREEVKRAELGGYRgpipdKNPRSGSYKVvhers 562
Cdd:pfam15440 319 DCFSEGRGRKTEEGQVEPSAKEKSKKDEiactdSMENDVYLERfnDKKEEKSKKEGDFRK-----EAELSSSSQH----- 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 563 psppprrsaeGKEREKMATKEENPpisKTTFSVYRGSEINVRMDALEDDF---GSSVAHERRLSRDLVHGNKKDLGFRSI 639
Cdd:pfam15440 389 ----------DDSREKPDVKESSP---KSVFSIKRESTVKVDMDKFDEDLarpSSSLAQERQLSRDLVHSGKKDQEFRSI 455
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 640 FQHIQSSQSRRSPSELFAQHIVTIVHHVKEHHFESPEMTLSERFTMYQRRAMEQGAARSKKSPEFHRRIDISPSAFRKHP 719
Cdd:pfam15440 456 FEHIQSQQSERSPSEEFAQHIVTIVHHVKAHYFPSSGMTLHERFSKYQKRAAEQEEMKSNKSPEIHRRIDMSPSALRKHR 535
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 942123136 720 FLQDEMKGSRESSSykGEGKYKEDPVDLRLDIERRKKY--KERDHKRDGSRESVDSRDSSQSRERsTEKAQREH 791
Cdd:pfam15440 536 TLFEESKQSKESSY--KEGKVKEDPNDLRHDIERRRKErlKERDEKRFHIRDSQDSRFSSLSRER-TEKFQKPH 606
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
183-344 |
7.37e-08 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.87 E-value: 7.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 183 AAQKEARASLPPAQVSQGAESKAKPPADATSNDSK-------DPEAISKPWKGLTAYDSSPKHPSSVVHSVNASGLNSPP 255
Cdd:PHA03247 2761 PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESReslpspwDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPP 2840
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 256 HPSPIQKSPLQ---SVA----VKRSPPQKSPQShSPAGPSSLR---------------------QSPVPPIPPLRTVPRQ 307
Cdd:PHA03247 2841 PPPGPPPPSLPlggSVApggdVRRRPPSRSPAA-KPAAPARPPvrrlarpavsrstesfalppdQPERPPQPQAPPPPQP 2919
|
170 180 190
....*....|....*....|....*....|....*..
gi 942123136 308 SPQAHSPKRSSPAERSPVRKSPPIISTSYNNAQKEES 344
Cdd:PHA03247 2920 QPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS 2956
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
190-395 |
9.02e-08 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 56.31 E-value: 9.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 190 ASLPPAQVSQGAESKAKPPADA---TSNDSKDPEAISKPWKGltAYDSSPKHPSSVVHSVNASGlnSPPHPSPIQKSPLQ 266
Cdd:pfam03154 410 AHPPPLQLMPQSQQLPPPPAQPpvlTQSQSLPPPAASHPPTS--GLHQVPSQSPFPQHPFVPGG--PPPITPPSGPPTST 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 267 SVAVKRSPPqksPQSHSPAGPSSLRQSPVPPIPPLRTVPRQSPQAHSPKRSSPAERSPvRKSPPIISTSYNNAQ-----K 341
Cdd:pfam03154 486 SSAMPGIQP---PSSASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSP-SPEPTVVNTPSHASQsarfyK 561
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 942123136 342 EESRAGESTS-------PLVSSYLKRYLEEQKNKATTQDRENGREKDQKAKNEEREKVKER 395
Cdd:pfam03154 562 HLDRGYNSCArtdlyfmPLAGSKLAKKREEALEKAKREAEQKAREEKEREKEKEKERERER 622
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
188-330 |
3.13e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 51.14 E-value: 3.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 188 ARASLPPAQVSQGAESKAKPPADATSNDSKDPEAiskPWKGLTAYDSSPKHPSSVVHSVNASGLNSPPHPSPIQKSPLQS 267
Cdd:PRK07764 637 AEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWP---AKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQ 713
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 942123136 268 VAVKRSPPQKSPQSHSPAGPSSLRQSPVPPIPPLRTVPRQSPQAHSPKRSSPAERSPVRKSPP 330
Cdd:PRK07764 714 ADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPP 776
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
182-352 |
3.76e-06 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 50.92 E-value: 3.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 182 NAAQKEARASLPPA-QVSQGAESKAKPPADATSNDSK---DPEAISKPWKGLTAYDSSPKHPSSVV--HSVNASGLNSPP 255
Cdd:pfam03154 160 SSAQQQILQTQPPVlQAQSGAASPPSPPPPGTTQAATagpTPSAPSVPPQGSPATSQPPNQTQSTAapHTLIQQTPTLHP 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 256 HPSPIQKSPLQSVAVKRSPPQKSPQSHspagPSSLRQSPVPPIP-PLRTVPRQSPQAHSPKRSSPAERSPVRKSPPIIST 334
Cdd:pfam03154 240 QRLPSPHPPLQPMTQPPPPSQVSPQPL----PQPSLHGQMPPMPhSLQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSP 315
|
170 180
....*....|....*....|
gi 942123136 335 --SYNNAQKEESRAGESTSP 352
Cdd:pfam03154 316 aaPGQSQQRIHTPPSQSQLQ 335
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
180-552 |
1.00e-04 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 46.22 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 180 QHNAAQKEARASLPPAQVSQGAESKAKPPADATSNDS----KDPEAISKPWKGLTAYDSSPKHPSSV-VHSVNASGLNSP 254
Cdd:PTZ00449 506 KHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEpkegGKPGETKEGEVGKKPGPAKEHKPSKIpTLSKKPEFPKDP 585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 255 PHP----SPIQ-KSPLQSVAVKRSPPQKSPQS----HSPAGPSSLRQSPVPPIPPLRTVPRQSPQAHSPKRSSPAERSPV 325
Cdd:PTZ00449 586 KHPkdpeEPKKpKRPRSAQRPTRPKSPKLPELldipKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKP 665
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 326 RKSPPIISTSYNNAQKEESRAGESTSPLV-----SSYLKRYLEEQKNKATTQDRE--NGREKDQKAKNEE-REKVKERSG 397
Cdd:PTZ00449 666 PFDPKFKEKFYDDYLDAAAKSKETKTTVVldesfESILKETLPETPGTPFTTPRPlpPKLPRDEEFPFEPiGDPDAEQPD 745
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 398 VSEMGVP------FFK--------SDYLAPKNESESLYRGIPSP----RRYRYSNELEKSMSAEFQeealhSMDMqeseK 459
Cdd:PTZ00449 746 DIEFFTPpeeertFFHetpadtplPDILAEEFKEEDIHAETGEPdeamKRPDSPSEHEDKPPGDHP-----SLPK----K 816
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 460 KHRVKGLK--DSKLEDEPK--CKSKVIVPSTAKNQDTYEERLSKWEELAYFPSAKEKSWEDEDME---DEVYPGRAK-RE 531
Cdd:PTZ00449 817 RHRLDGLAlsTTDLESDAGriAKDASGKIVKLKRSKSFDDLTTVEEAEEMGAEARKIVVDDDGTEaddEDTHPPEEKhKS 896
|
410 420
....*....|....*....|...
gi 942123136 532 EVKRaelggyRGP--IPDKNPRS 552
Cdd:PTZ00449 897 EVRR------RRPpkKPSKPKKP 913
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
178-352 |
1.60e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 46.08 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 178 VKQHNAAQKEARASLPPAQvSQGAESKAKPPADATSNDSKDPEAISKPWKG--LTAYDSSPKHPSSVVHSVNASGLNSPP 255
Cdd:PHA03247 2661 VSRPRRARRLGRAAQASSP-PQRPRRRAARPTVGSLTSLADPPPPPPTPEPapHALVSATPLPPGPAAARQASPALPAAP 2739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 256 HPSPIQKSPLQSVAVKRSPpqkSPQShsPAGPSSLRQSPVPPIPPLRTVPRqsPQAHSPKRSSPAERSPVRKSPPIISTS 335
Cdd:PHA03247 2740 APPAVPAGPATPGGPARPA---RPPT--TAGPPAPAPPAAPAAGPPRRLTR--PAVASLSESRESLPSPWDPADPPAAVL 2812
|
170
....*....|....*..
gi 942123136 336 YNNAQKEESRAGESTSP 352
Cdd:PHA03247 2813 APAAALPPAASPAGPLP 2829
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
179-428 |
2.78e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 45.31 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 179 KQHNAAQKEARASLPPAQVSQGAESKAKPPADATSNDSKDPEAISKPWKGltaydSSPKHPSSVVHSVNASGLNSPPHPS 258
Cdd:PHA03247 2729 RQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG-----PPRRLTRPAVASLSESRESLPSPWD 2803
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 259 PIQKSPLQSVAVKRSPPQKSPQSHSPAGPSSLRQSPVPPIPPLRT-------------VPRQSPQAHSPKRSSPAERSPV 325
Cdd:PHA03247 2804 PADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPslplggsvapggdVRRRPPSRSPAAKPAAPARPPV 2883
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 326 RK--SPPIISTSYNNAQKEESRAGESTSPLVSSYLKRYLEEQKNKATTQDRENGREKDQKAKNEEREKVKERSGvsemGV 403
Cdd:PHA03247 2884 RRlaRPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSG----AV 2959
|
250 260
....*....|....*....|....*
gi 942123136 404 PFFKSDYLAPkNESESLYRGIPSPR 428
Cdd:PHA03247 2960 PQPWLGALVP-GRVAVPRFRVPQPA 2983
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
188-330 |
4.32e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 44.29 E-value: 4.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 188 ARASLPPaqvsQGAESKAKPPADAtsndskdPEAISKPWKGLTAYDSSPKHPSSVVHSVNASGLNSPPHPSPIQKSPLQS 267
Cdd:PHA03378 681 ANTMLPI----QWAPGTMQPPPRA-------PTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAA 749
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 942123136 268 VAVKRSPPQKSPQSHSPAGPSSLRQSPVPPiPPLRTVPRQSPQ-AHSPKRSSPAERSPVRKSPP 330
Cdd:PHA03378 750 APGRARPPAAAPGRARPPAAAPGAPTPQPP-PQAPPAPQQRPRgAPTPQPPPQAGPTSMQLMPR 812
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
187-330 |
4.51e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.39 E-value: 4.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 187 EARASLPPAQVSQGAESKAKPPADAtsNDSKDPEAISKPWKGLTaydSSPKHPSSvvhSVNASGLNSPPHPSPIQKSPLQ 266
Cdd:PHA03307 57 AGAAACDRFEPPTGPPPGPGTEAPA--NESRSTPTWSLSTLAPA---SPAREGSP---TPPGPSSPDPPPPTPPPASPPP 128
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 942123136 267 SVAVKRSPPQKSPQSHSPAGPSSLRQSPVPPI--------PPLRTVPRQSPQAHSPKRSSPAERSPVRKSPP 330
Cdd:PHA03307 129 SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAavasdaasSRQAALPLSSPEETARAPSSPPAEPPPSTPPA 200
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
232-329 |
5.72e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 43.90 E-value: 5.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 232 YDSSPKHPSSVVHSVNASGLNSPPHPSPIQKSPLQSVAVKRSPPQKSPQSHSP--AGPSSLRQ---SPVPPIPPLRTVPR 306
Cdd:PHA03378 674 YQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPpaAAPGRARPpaaAPGRARPPAAAPGR 753
|
90 100
....*....|....*....|...
gi 942123136 307 QSPQAHSPKRSSPAERSPVRKSP 329
Cdd:PHA03378 754 ARPPAAAPGRARPPAAAPGAPTP 776
|
|
| CytochromB561_N |
pfam09786 |
Cytochrome B561, N terminal; Members of this family are found in the N terminal region of ... |
233-370 |
5.80e-04 |
|
Cytochrome B561, N terminal; Members of this family are found in the N terminal region of cytochrome B561, as well as in various other putative uncharacterized proteins.
Pssm-ID: 462899 Cd Length: 579 Bit Score: 43.66 E-value: 5.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 233 DSSPKHPSSVVHSVNASGLNSPPHPSPIQKSPLQSVAVKRSPPQKSPQSHSPAGPSSLRQSPV-----PPIPPLRTVPRQ 307
Cdd:pfam09786 124 THRKKPPKSKSSPQSPSPVLVPLHQSVSPSSSESRKGGDKSPAGSGKKLRSFSTSSKSPASPSvylrgSPVPLNSSPLPS 203
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 942123136 308 SPQAHSPKRSSPaERSPVRKSPpiiSTSYNNAQKEESRAGEStsplvssyLKRYLEEQKNKAT 370
Cdd:pfam09786 204 DRNYENSVQSSP-EIDSAVSTP---WSRKRATIGKEIRTEKM--------LERFLAEVDEKIT 254
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
246-329 |
1.23e-03 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 42.69 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 246 VNASGLNSPPH---PSPIQKSPLQSVAVKRS-PPQKSPQSHSPAGPSSLRQSPVP--PIPPLRTVPRQSPQahsPKRSSP 319
Cdd:pfam09606 362 ANPMQRGQPGMmssPSPVPGQQVRQVTPNQFmRQSPQPSVPSPQGPGSQPPQSHPggMIPSPALIPSPSPQ---MSQQPA 438
|
90
....*....|
gi 942123136 320 AERSPVRKSP 329
Cdd:pfam09606 439 QQRTIGQDSP 448
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
246-330 |
1.85e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.10 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 246 VNASGLNSPPHPSPIQKSPLQS----VAVKRSPPQKSPQshspagPSSLRQSPVPPIPPLRTVPRQSPQAH-SPKRSSPA 320
Cdd:PRK14950 365 APQPAKPTAAAPSPVRPTPAPStrpkAAAAANIPPKEPV------RETATPPPVPPRPVAPPVPHTPESAPkLTRAAIPV 438
|
90
....*....|
gi 942123136 321 ERSPVRKSPP 330
Cdd:PRK14950 439 DEKPKYTPPA 448
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
193-381 |
2.37e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.08 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 193 PPAQVSQGAESKAKPPADATSNDSKDPEAISKPWKGLTAYDSSPKHPSSVVHSVNASGLNSPPHPSPIQKSPLQSVAVKR 272
Cdd:PHA03307 232 AGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSS 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 273 SPPQKSPQSHSPAGPSSLRQSPVPPIPPLRTVPRQSPQAHSPKRSSPAER-SPVRKSPPIISTSYNNAQKEESRAGESTS 351
Cdd:PHA03307 312 PRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADpSSPRKRPRPSRAPSSPAASAGRPTRRRAR 391
|
170 180 190
....*....|....*....|....*....|
gi 942123136 352 PLVSSylkRYLEEQKNKATTQDRENGREKD 381
Cdd:PHA03307 392 AAVAG---RARRRDATGRFPAGRPRPSPLD 418
|
|
| Btz |
pfam09405 |
CASC3/Barentsz eIF4AIII binding; This domain is found on CASC3 (cancer susceptibility ... |
865-950 |
2.63e-03 |
|
CASC3/Barentsz eIF4AIII binding; This domain is found on CASC3 (cancer susceptibility candidate gene 3 protein) which is also known as Barentsz (Btz). CASC3 is a component of the EJC (exon junction complex) which is a complex that is involved in post-transcriptional regulation of mRNA in metazoa. The complex is formed by the association of four proteins (eIF4AIII, Barentsz, Mago, and Y14), mRNA, and ATP. This domain wraps around eIF4AIII and stacks against the 5' nucleotide.
Pssm-ID: 430588 [Multi-domain] Cd Length: 121 Bit Score: 38.65 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 865 GKGRGWPRVMYPGNASSDFQRRNRDEEW-------DPEYTPKSKKYYLHDDREGEGGEKWANRGRGRGqfqRGRGRFLYR 937
Cdd:pfam09405 5 ESQSGRTPSAPPTEPKEDAERKRREHEKyekerdeNPAFVPTRGAFFLHDDRFAEPAANGFGKSKGRP---YGRRRRLWD 81
|
90
....*....|...
gi 942123136 938 KSSDSpKWTHDKY 950
Cdd:pfam09405 82 DASEG-KWTHDLF 93
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
192-339 |
3.11e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.85 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 192 LPPAQVSQGAESKAKPPADAtsndskdPEAISKPWKGLTAYDSSPKHPSSVVHSVNASGlnSPPHPSPIQKSPLQSVAVK 271
Cdd:PHA03247 2555 LPPAAPPAAPDRSVPPPRPA-------PRPSEPAVTSRARRPDAPPQSARPRAPVDDRG--DPRGPAPPSPLPPDTHAPD 2625
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 942123136 272 RSPPQKSPQSHSPAGPSSLRQSPVP-----PIPPLRTVPRQ-SPQAHSPKRSSPAERSPVRKSPPIISTSYNNA 339
Cdd:PHA03247 2626 PPPPSPSPAANEPDPHPPPTVPPPErprddPAPGRVSRPRRaRRLGRAAQASSPPQRPRRRAARPTVGSLTSLA 2699
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
194-330 |
4.49e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 40.82 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 194 PAQVSQGAESKAKPPADAtsndskDPEAISKPWKGLTAYD-------------SSPKHPSSVVHSVNASGLNSPPH---- 256
Cdd:PHA03378 602 PSQTPEPPTTQSHIPETS------APRQWPMPLRPIPMRPlrmqpitfnvlvfPTPHQPPQVEITPYKPTWTQIGHipyq 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 257 PSPIQKS---PLQSVAVKRSPPQKSPQSHSP-AGPSSLRQSP----VPPIPPLRTVPRQSPQAHSPKRSSPAERSPVRKS 328
Cdd:PHA03378 676 PSPTGANtmlPIQWAPGTMQPPPRAPTPMRPpAAPPGRAQRPaaatGRARPPAAAPGRARPPAAAPGRARPPAAAPGRAR 755
|
..
gi 942123136 329 PP 330
Cdd:PHA03378 756 PP 757
|
|
| Cyano_gly_rpt |
TIGR04260 |
rSAM-associated Gly-rich repeat protein; Members of this protein family average 125 in length, ... |
76-115 |
5.05e-03 |
|
rSAM-associated Gly-rich repeat protein; Members of this protein family average 125 in length, roughly half of which is the repetitive and extremely Gly-rich C-terminal region. Virtually all members occur in the Cyanobacteria, in a neighborhood that includes a radical SAM/SPASM domain, often a marker of peptide modification systems.
Pssm-ID: 275087 [Multi-domain] Cd Length: 119 Bit Score: 37.80 E-value: 5.05e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 942123136 76 RGYNRGYRRPFFNRGRGRGF-HQRGQYNRGGYGNyRSNWQN 115
Cdd:TIGR04260 71 RGWGNGGGRGWGNGGGGGGWgNGGGGWGNGGWVN-GGGWRN 110
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
238-354 |
6.00e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 40.62 E-value: 6.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 942123136 238 HPSSVVHSVNASGLNSPPHPSPiQKSPLQSVAVKRSPPQKSPQSHSPAGPSSLRQSPVPPIPPLRTVPRQ---------- 307
Cdd:PRK07994 360 HPAAPLPEPEVPPQSAAPAASA-QATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQlqraqgatka 438
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 942123136 308 ---SPQAHSPKRSSPAERSPVRKSPPIISTSYNNAQKEESRAGESTSPLV 354
Cdd:PRK07994 439 kksEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVE 488
|
|
| |
