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Conserved domains on  [gi|2258322385|ref|XP_013707716|]
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protein PHOSPHATE STARVATION RESPONSE 1 [Brassica napus]

Protein Classification

Myb family transcription factor( domain architecture ID 10019339)

Myb family transcription factor similar to phosphate starvation response (PSR) proteins that are involved in phosphate starvation signaling both in vascular plants and in unicellular algae

CATH:  1.20.58.1880
Gene Ontology:  GO:0003677|GO:0003700|GO:0006355
PubMed:  8882580|34200125|31084451
SCOP:  4000317

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Myb_CC_LHEQLE pfam14379
MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC ...
 293-335 1.47e-24

MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif.


:

Pssm-ID: 464160  Cd Length: 47  Bit Score: 94.98  E-value: 1.47e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2258322385 293 ITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ 335
Cdd:pfam14379   2 ITEALRMQMEVQKRLHEQLEVQKHLQLRIEAQGKYLQSILEKA 44
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 205-259 4.79e-22

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


:

Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 88.23  E-value: 4.79e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2258322385 205 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVDGLTIYHVKSHLQKYRT 259
Cdd:TIGR01557   1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55
 
Name Accession Description Interval E-value
Myb_CC_LHEQLE pfam14379
MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC ...
 293-335 1.47e-24

MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif.


Pssm-ID: 464160  Cd Length: 47  Bit Score: 94.98  E-value: 1.47e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2258322385 293 ITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ 335
Cdd:pfam14379   2 ITEALRMQMEVQKRLHEQLEVQKHLQLRIEAQGKYLQSILEKA 44
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 205-259 4.79e-22

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 88.23  E-value: 4.79e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2258322385 205 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVDGLTIYHVKSHLQKYRT 259
Cdd:TIGR01557   1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55
PLN03162 PLN03162
golden-2 like transcription factor; Provisional
 195-261 1.91e-12

golden-2 like transcription factor; Provisional


Pssm-ID: 178707 [Multi-domain]  Cd Length: 526  Bit Score: 68.66  E-value: 1.91e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2258322385 195 TSSSSNNGTGKARMRWTPELHEAFVEAVNSLGgSERATPKGVLKIMKVDGLTIYHVKSHLQKYRTAR 261
Cdd:PLN03162  225 SCKNAAPGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHR 290
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 207-258 4.23e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 46.34  E-value: 4.23e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2258322385 207 RMRWTPELHEAFVEAVNSLGGSeratPKGVLKIMKvdGLTIYHVKSHLQKYR 258
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNR----WKKIAKLLP--GRTDNQCKNRWQNYL 46
 
Name Accession Description Interval E-value
Myb_CC_LHEQLE pfam14379
MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC ...
 293-335 1.47e-24

MYB-CC type transfactor, LHEQLE motif; This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif.


Pssm-ID: 464160  Cd Length: 47  Bit Score: 94.98  E-value: 1.47e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 2258322385 293 ITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQGKYLQMMFEKQ 335
Cdd:pfam14379   2 ITEALRMQMEVQKRLHEQLEVQKHLQLRIEAQGKYLQSILEKA 44
myb_SHAQKYF TIGR01557
myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain ...
 205-259 4.79e-22

myb-like DNA-binding domain, SHAQKYF class; This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.


Pssm-ID: 130620 [Multi-domain]  Cd Length: 57  Bit Score: 88.23  E-value: 4.79e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2258322385 205 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVDGLTIYHVKSHLQKYRT 259
Cdd:TIGR01557   1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55
PLN03162 PLN03162
golden-2 like transcription factor; Provisional
 195-261 1.91e-12

golden-2 like transcription factor; Provisional


Pssm-ID: 178707 [Multi-domain]  Cd Length: 526  Bit Score: 68.66  E-value: 1.91e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2258322385 195 TSSSSNNGTGKARMRWTPELHEAFVEAVNSLGgSERATPKGVLKIMKVDGLTIYHVKSHLQKYRTAR 261
Cdd:PLN03162  225 SCKNAAPGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHR 290
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 207-258 4.23e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 46.34  E-value: 4.23e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2258322385 207 RMRWTPELHEAFVEAVNSLGGSeratPKGVLKIMKvdGLTIYHVKSHLQKYR 258
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNR----WKKIAKLLP--GRTDNQCKNRWQNYL 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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