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Conserved domains on  [gi|780003129|ref|XP_011683081|]
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hyalin-like [Strongylocentrotus purpuratus]

Protein Classification

DUF5011/hyalin repeat domain-containing protein( domain architecture ID 12327)

DUF5011//hyalin repeat (HYR) domain-containing protein may contain a bacterial immunoglobulin-like domain; similar to Acholeplasma virus L2 uncharacterized 81.3 kDa protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HYR super family cl47740
HYR domain; This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin ...
 23-102 5.09e-17

HYR domain; This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion.


The actual alignment was detected with superfamily member pfam02494:

Pssm-ID: 460572 [Multi-domain]  Cd Length: 81  Bit Score: 72.42  E-value: 5.09e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780003129   23 DNSDPVITgCPDDISVAIPSGSTRVAITWTEPTATDNSGTVISES-TRSPGDTFDVGTTVITYTFTDGSGNFAICSFSVT 101
Cdd:pfam02494   2 DTTPPTVK-CPNNIVRTVELGTSTVRVFFTEPTAFDNSGQAILVSrTAQPGDFFPVGTTTVTYVAYDNSGNRASCTFTVT 80


                  .
gi 780003129  102 V 102
Cdd:pfam02494  81 V 81
HYR super family cl47740
HYR domain; This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin ...
 107-187 1.21e-16

HYR domain; This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion.


The actual alignment was detected with superfamily member pfam02494:

Pssm-ID: 460572 [Multi-domain]  Cd Length: 81  Bit Score: 71.65  E-value: 1.21e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780003129  107 DNIDPVITgCPDDISVAIPSGSTRVAITWTEPTATDNSDSVVMFTTTNSPGDTFSVGTTQVTYSFTDGSGNDAFCTFFVI 186
Cdd:pfam02494   2 DTTPPTVK-CPNNIVRTVELGTSTVRVFFTEPTAFDNSGQAILVSRTAQPGDFFPVGTTTVTYVAYDNSGNRASCTFTVT 80


                  .
gi 780003129  187 V 187
Cdd:pfam02494  81 V 81
 
Name Accession Description Interval E-value
HYR pfam02494
HYR domain; This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin ...
 23-102 5.09e-17

HYR domain; This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion.


Pssm-ID: 460572 [Multi-domain]  Cd Length: 81  Bit Score: 72.42  E-value: 5.09e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780003129   23 DNSDPVITgCPDDISVAIPSGSTRVAITWTEPTATDNSGTVISES-TRSPGDTFDVGTTVITYTFTDGSGNFAICSFSVT 101
Cdd:pfam02494   2 DTTPPTVK-CPNNIVRTVELGTSTVRVFFTEPTAFDNSGQAILVSrTAQPGDFFPVGTTTVTYVAYDNSGNRASCTFTVT 80


                  .
gi 780003129  102 V 102
Cdd:pfam02494  81 V 81
HYR pfam02494
HYR domain; This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin ...
 107-187 1.21e-16

HYR domain; This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion.


Pssm-ID: 460572 [Multi-domain]  Cd Length: 81  Bit Score: 71.65  E-value: 1.21e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780003129  107 DNIDPVITgCPDDISVAIPSGSTRVAITWTEPTATDNSDSVVMFTTTNSPGDTFSVGTTQVTYSFTDGSGNDAFCTFFVI 186
Cdd:pfam02494   2 DTTPPTVK-CPNNIVRTVELGTSTVRVFFTEPTAFDNSGQAILVSRTAQPGDFFPVGTTTVTYVAYDNSGNRASCTFTVT 80


                  .
gi 780003129  187 V 187
Cdd:pfam02494  81 V 81
 
Name Accession Description Interval E-value
HYR pfam02494
HYR domain; This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin ...
 23-102 5.09e-17

HYR domain; This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion.


Pssm-ID: 460572 [Multi-domain]  Cd Length: 81  Bit Score: 72.42  E-value: 5.09e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780003129   23 DNSDPVITgCPDDISVAIPSGSTRVAITWTEPTATDNSGTVISES-TRSPGDTFDVGTTVITYTFTDGSGNFAICSFSVT 101
Cdd:pfam02494   2 DTTPPTVK-CPNNIVRTVELGTSTVRVFFTEPTAFDNSGQAILVSrTAQPGDFFPVGTTTVTYVAYDNSGNRASCTFTVT 80


                  .
gi 780003129  102 V 102
Cdd:pfam02494  81 V 81
HYR pfam02494
HYR domain; This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin ...
 107-187 1.21e-16

HYR domain; This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion.


Pssm-ID: 460572 [Multi-domain]  Cd Length: 81  Bit Score: 71.65  E-value: 1.21e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 780003129  107 DNIDPVITgCPDDISVAIPSGSTRVAITWTEPTATDNSDSVVMFTTTNSPGDTFSVGTTQVTYSFTDGSGNDAFCTFFVI 186
Cdd:pfam02494   2 DTTPPTVK-CPNNIVRTVELGTSTVRVFFTEPTAFDNSGQAILVSRTAQPGDFFPVGTTTVTYVAYDNSGNRASCTFTVT 80


                  .
gi 780003129  187 V 187
Cdd:pfam02494  81 V 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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