sigma factor binding protein 2, chloroplastic [Cucumis sativus]
Protein Classification
VQ motif-containing protein( domain architecture ID 10529371)
VQ motif-containing protein similar to Arabidopsis thaliana protein MKS1, a regulator of plant defense response
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| VQ | pfam05678 | VQ motif; This short motif is found in a variety of plant proteins. These proteins vary ... |
42-68 | 7.69e-08 | ||
VQ motif; This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Swiss:Q9LDH1. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.). : Pssm-ID: 461711 Cd Length: 28 Bit Score: 45.84 E-value: 7.69e-08
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| Name | Accession | Description | Interval | E-value | ||
| VQ | pfam05678 | VQ motif; This short motif is found in a variety of plant proteins. These proteins vary ... |
42-68 | 7.69e-08 | ||
VQ motif; This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Swiss:Q9LDH1. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.). Pssm-ID: 461711 Cd Length: 28 Bit Score: 45.84 E-value: 7.69e-08
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| Name | Accession | Description | Interval | E-value | ||
| VQ | pfam05678 | VQ motif; This short motif is found in a variety of plant proteins. These proteins vary ... |
42-68 | 7.69e-08 | ||
VQ motif; This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Swiss:Q9LDH1. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors (Bateman A pers. obs.). Pssm-ID: 461711 Cd Length: 28 Bit Score: 45.84 E-value: 7.69e-08
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| Blast search parameters | ||||
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