|
Name |
Accession |
Description |
Interval |
E-value |
| KIP1 |
pfam07765 |
KIP1-like protein; This is a family of sequences found exclusively in plants. They are similar ... |
14-87 |
6.86e-42 |
|
KIP1-like protein; This is a family of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions. It has also been suggested that the protein's coiled- coils allow it to dimerize in vivo.
Pssm-ID: 429647 [Multi-domain] Cd Length: 74 Bit Score: 147.81 E-value: 6.86e-42
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 778668981 14 SWWWDSHISPKTSKWLQESLSDMDEKIKQMIKVIEEDADSFAKRAEMYYKKRPELMKLVEEFYRAYRALAERYD 87
Cdd:pfam07765 1 SWWWDSHIRPKQSKWLQENLSEMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELINLVEEFYRSYRSLAERYD 74
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
211-913 |
8.88e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 83.19 E-value: 8.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 211 DLKEKKIESNGshdlkhqvYVESERVDKAETEIISLKNSLSKLEAEKEvglvqynNSLQRLSKLESEVSRTQEDSRGLNE 290
Cdd:TIGR02169 215 ALLKEKREYEG--------YELLKEKEALERQKEAIERQLASLEEELE-------KLTEEISELEKRLEEIEQLLEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 291 R-AGKAETEVLILKESLAKLETEREtsllryqQCLDKLSTLQDSILCVQKNVENTE-RASKAETEVERLKWEISRVESQR 368
Cdd:TIGR02169 280 KiKDLGEEEQLRVKEKIGELEAEIA-------SLERSIAEKERELEDAEERLAKLEaEIDKLLAEIEELEREIEEERKRR 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 369 EAALVQYRESSDIIVNLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAGLKHHLCTEKIAGLEHQISNA 448
Cdd:TIGR02169 353 DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGI 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 449 QDELERLQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQKIGSQSVELIEKQKELGRLWTSIQDERMRYVENKTA 528
Cdd:TIGR02169 433 EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAV 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 529 FRALQEQHSKSQEEIR---SMAEDRQIQIKTLKEMETRNQVLEDEVQKiEEERRSLKDLNLS--SEVSINCLRDEMSNMT 603
Cdd:TIGR02169 513 EEVLKASIQGVHGTVAqlgSVGERYATAIEVAAGNRLNNVVVEDDAVA-KEAIELLKRRKAGraTFLPLNKMRDERRDLS 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 604 TNLEK---------LEANLEFQLNQKNALEKEILCLKEELSD--LKRKNLIMLEQIQF-------GGFAPENFGSSVK-E 664
Cdd:TIGR02169 592 ILSEDgvigfavdlVEFDPKYEPAFKYVFGDTLVVEDIEAARrlMGKYRMVTLEGELFeksgamtGGSRAPRGGILFSrS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 665 LRDENSKMIETIEVEKREKSALLEKLKD-----------MEEHSEKNTLLENAISNLHIELESEQTKVKVLEECCQLLSE 733
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRienrldelsqeLSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 734 EKSTLVTEKAFLSSQLQMATENLEgqsekntllESSLSDANLERKQLAENVEKLHCLNNDLEEKVRLLEGNLEDVQ--LK 811
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLH---------KLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEqkLN 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 812 NLHLRKSLERSEQEllEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVIVKLSGDSKHLVREIASQRERNCT 891
Cdd:TIGR02169 823 RLTLEKEYLEKEIQ--ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRE 900
|
730 740
....*....|....*....|..
gi 778668981 892 LEEELGKVQEDIKQHKHREKSL 913
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLSEL 922
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
302-991 |
2.12e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 2.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 302 LKESLAKLETERETSLLRYQQCLDKLSTLQDsilcvqKNVENTERASKAETEVERLKWEISRVESQ-------REAALVQ 374
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRL------EVSELEEEIEELQKELYALANEISRLEQQkqilrerLANLERQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 375 YRESSDIIVNLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAglkhhlcTEKIAGLEHQISNAQDELER 454
Cdd:TIGR02168 318 LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEEL-------ESRLEELEEQLETLRSKVAQ 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 455 LQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQKIgsQSVELIEKQKELGRLWTSIQDERMRYVENKTAFRALQE 534
Cdd:TIGR02168 391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 535 QHSKSQEEIRSMAED---RQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLN--LSSEVSI---------NCLRDEMS 600
Cdd:TIGR02168 469 ELEEAEQALDAAERElaqLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILgvLSELISVdegyeaaieAALGGRLQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 601 NMTTNLEKlEANLEFQLNQKNALEKEILCLKEELSDLKRKNLIMLEQIQFGGF--APENFGSSVKELRD------ENSKM 672
Cdd:TIGR02168 549 AVVVENLN-AAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFlgVAKDLVKFDPKLRKalsyllGGVLV 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 673 IETIEV-------------------------------EKREKSALLEKLKDMEEHSEKNTLLENAISNLHIELESEQTKV 721
Cdd:TIGR02168 628 VDDLDNalelakklrpgyrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKEL 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 722 KVLEECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQSEKNTLLESSLSDANLERKQLAENVEKLHCLNNDLEEKVRLL 801
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 802 EGNLEDVQLKNLHLRKSLERSEQEL-------LEAEQILIMMQNEKS-------ELHKRVKELSIVCEEAKAIVEEKESV 867
Cdd:TIGR02168 788 EAQIEQLKEELKALREALDELRAELtllneeaANLRERLESLERRIAaterrleDLEEQIEELSEDIESLAAEIEELEEL 867
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 868 IVKLSGDSKHLVREIASQRERNCTLEEELGKVQEDIKQHKHREKSLRCELVKKRMEVEICETQADELfgELQISNVHEIV 947
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL--EVRIDNLQERL 945
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 778668981 948 FKEKLLELDEAyvnlETRSNYRDVKTDTTRERINNITDLNGELG 991
Cdd:TIGR02168 946 SEEYSLTLEEA----EALENKIEDDEEEARRRLKRLENKIKELG 985
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
268-589 |
3.77e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 3.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 268 LQRLSKLESEVSRtQEDSrgLNERAGKAEtEVLILKESLAKLEteRETSLLRYQQCLDKLSTLQDSILCVQKNVEN-TER 346
Cdd:COG1196 188 LERLEDILGELER-QLEP--LERQAEKAE-RYRELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEElEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 347 ASKAETEVERLKWEISRVESQREAALVQYRESSDIIVNLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKA 426
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 427 AGLKHHLCTEKIAGLEHQISNAQDELERLQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQKIGSQSVELIEKQK 506
Cdd:COG1196 342 LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 507 ELGRLWTSIQDERMRYVENKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNL 586
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
...
gi 778668981 587 SSE 589
Cdd:COG1196 502 DYE 504
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
360-713 |
5.75e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 5.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 360 EISRVESQREAALVQYREssdiivnLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAGLKHHLCTEKIA 439
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAE-------LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 440 GLEHQISNAQDELERLQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQKIGSQSVELIEKQKELGRLWTSIQDER 519
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 520 MRYVENKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEVSINCLRDEM 599
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 600 SNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRKNLIMLEQIQFGG-FAPENFGSSVKELRDE-------NSK 671
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIeDDEEEARRRLKRLENKikelgpvNLA 990
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 778668981 672 MIETIEVEKREKSALLEKLKDMEEHSEKntlLENAISNLHIE 713
Cdd:TIGR02168 991 AIEEYEELKERYDFLTAQKEDLTEAKET---LEEAIEEIDRE 1029
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
275-990 |
1.83e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.41 E-value: 1.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 275 ESEVSRTQEDSRGLNERAGKAETEVLILKESLAKLETERETsLLRYQQCLDKLSTLQDSILCVQKNVENTERaSKAETEV 354
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREK-AERYQALLKEKREYEGYELLKEKEALERQK-EAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 355 ERLKWEISRVESQREaalvqyressDIIVNLEERVVHAEEDARRYKVQSDEaqiEVLTIREALAQLveetkaaglkhhlc 434
Cdd:TIGR02169 247 ASLEEELEKLTEEIS----------ELEKRLEEIEQLLEELNKKIKDLGEE---EQLRVKEKIGEL-------------- 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 435 TEKIAGLEHQISNAQDELERLQDEKDNGFAKLKGaeerclhlqrsnqiLQSEMESMVQKIGSQSVELIEKQKELGRLWTS 514
Cdd:TIGR02169 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDK--------------LLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 515 IQDERMRYVENKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEVSINC 594
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 595 LRDEMSNMTTNLEKLEANLE------FQLNQK-NALEKEILCLKEELSDLKrKNLIMLEQIQFGGFApenfgsSVKELRD 667
Cdd:TIGR02169 446 KALEIKKQEWKLEQLAADLSkyeqelYDLKEEyDRVEKELSKLQRELAEAE-AQARASEERVRGGRA------VEEVLKA 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 668 ENSKMIET----IEVEKREKSALleklkdmeehsekNTLLENAISNLHIELESeqtkvkVLEECCQLLSEEK-------- 735
Cdd:TIGR02169 519 SIQGVHGTvaqlGSVGERYATAI-------------EVAAGNRLNNVVVEDDA------VAKEAIELLKRRKagratflp 579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 736 ----------STLVTEKAFLSSQLQMAT-----ENLEGQSEKNTLLESSLSDAnleRKQLAEnvEKLHCLNNDLEEKVRL 800
Cdd:TIGR02169 580 lnkmrderrdLSILSEDGVIGFAVDLVEfdpkyEPAFKYVFGDTLVVEDIEAA---RRLMGK--YRMVTLEGELFEKSGA 654
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 801 LEG---NLEDVQLKNLHLRKSLERSEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVIVKLSGDSKH 877
Cdd:TIGR02169 655 MTGgsrAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 878 LVREIASQRERNCTLEEELGKVQEDIKQHKHREKSLRCELVKKRMEVEicETQADELFGELQISNVHEIVFKEKLLELDE 957
Cdd:TIGR02169 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN--DLEARLSHSRIPEIQAELSKLEEEVSRIEA 812
|
730 740 750
....*....|....*....|....*....|...
gi 778668981 958 AYVNLETRSNYRDVKTDTTRERINNITDLNGEL 990
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
210-864 |
4.20e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 4.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 210 LDLKEKKIE--SNGSHDLKHQVYVESERVDKAETEIISLKNSLSKLEAEKEvgLVQYNNSLQRLSKLESEVSRTQEDSRG 287
Cdd:TIGR02168 374 LEELEEQLEtlRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE--ELLKKLEEAELKELQAELEELEEELEE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 288 LNERAGKAETEVLILKESLAKLETER---ETSLLRYQQCLDKLSTLQDSILCVQKNVENTERASKAETEVERLKWEISRV 364
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALdaaERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 365 ESQREAALVQYRESS--DIIVNLEERVVHAEE----------------DARRYKVQSDEAQIeVLTIREALAQLVEETKA 426
Cdd:TIGR02168 532 DEGYEAAIEAALGGRlqAVVVENLNAAKKAIAflkqnelgrvtflpldSIKGTEIQGNDREI-LKNIEGFLGVAKDLVKF 610
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 427 AG---------LKHHLCTEKIA-GLEhqISNAQDELER---LQDEKDN-GFAKLKGAEERCLH-LQRSNQI--LQSEMES 489
Cdd:TIGR02168 611 DPklrkalsylLGGVLVVDDLDnALE--LAKKLRPGYRivtLDGDLVRpGGVITGGSAKTNSSiLERRREIeeLEEKIEE 688
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 490 MVQKIGSQSVELIEKQKELGRLWTSIQDERMRYVENKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLED 569
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 570 EVQKIEEERRSLKDlnlssevsinclrdemsnmttNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRKnlimleqiq 649
Cdd:TIGR02168 769 RLEEAEEELAEAEA---------------------EIEELEAQIEQLKEELKALREALDELRAELTLLNEE--------- 818
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 650 fggfapenfgssVKELRDENSKMIETIEVEKREKSALLEKLKDMEEHSEKNTL----LENAISNLHIELESEQTKVKVLE 725
Cdd:TIGR02168 819 ------------AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAeieeLEELIEELESELEALLNERASLE 886
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 726 ECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQSEKNTLLESSLSDANLERKQLAENVEKLHCLN-NDLEEKVRLLEGN 804
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTlEEAEALENKIEDD 966
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 778668981 805 LEDVQLKNLHLRKSLER-------SEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEK 864
Cdd:TIGR02168 967 EEEARRRLKRLENKIKElgpvnlaAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
342-914 |
4.31e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 4.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 342 ENTERASKAETEVERlkwEISRVESQREAALvQYRESSDIIVNLEERVV-----HAEEDARRYKVQSDEAQIEVLTIREA 416
Cdd:COG1196 186 ENLERLEDILGELER---QLEPLERQAEKAE-RYRELKEELKELEAELLllklrELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 417 LAQLVEETKAAGLKHHLCTEKIAGLEHQISNAQDELERLQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQKIGS 496
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 497 QSVELIEKQKELGRLWTSIQDERMRYVENKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEE 576
Cdd:COG1196 342 LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 577 ERRSLKDLNLSSEVSINCLRDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRKNLIMLEQIQFGGFA-- 654
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAea 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 655 -PENFGSSVKELRDENSK------MIETIEVEKREKSALLeklkdmeehseknTLLENAISNLHIELESeqtkvkVLEEC 727
Cdd:COG1196 502 dYEGFLEGVKAALLLAGLrglagaVAVLIGVEAAYEAALE-------------AALAAALQNIVVEDDE------VAAAA 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 728 CQLLSEEKSTLVTEkaflssqLQMATENLEGQSEKNTLLESSLSDANLERKQLAENVEKLHCLNNDLEEKVRllegnled 807
Cdd:COG1196 563 IEYLKAAKAGRATF-------LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL-------- 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 808 VQLKNLHLRKSLERSEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVIVKLSGDSKHLVREIASQRE 887
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
570 580
....*....|....*....|....*..
gi 778668981 888 RNCTLEEELGKVQEDIKQHKHREKSLR 914
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAER 734
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
196-471 |
5.99e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 5.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 196 SEDRTLRKGLNFHDLDLKEKKIES--NGSHDLKHQVYVESERVDKAETEIISLKNSLSKLEAEKEVGLVQYNNSLQRLSK 273
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEEleAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 274 LESEVSRTQEDSRGLNERAGKAETEVLILKESLAKLETERETSLLRYQQCLDKLSTLQDSILCVQKNVENTERA-SKAET 352
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAElAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 353 EVERLKWEISRVESQREAALVQYRESSDIIVNLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAGLKHH 432
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270
....*....|....*....|....*....|....*....
gi 778668981 433 LCTEKIAGLEHQISNAQDELERLQDEKDNGFAKLKGAEE 471
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
294-652 |
6.68e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 6.68e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 294 KAETEVLILKESLAKLETER---ETSLLRYQQCLDKLSTLQDSIlcVQKNVENTERASKAETEVERLKWEISRVESQREA 370
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALaelRKELEELEEELEQLRKELEEL--SRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 371 ALVQYRESSDIIVNLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAGLKHHLCTEKIAGLEHQISNAQD 450
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 451 ELERLQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQKIGSQSVELIEKQKELGRLWTSIQDERMRYVENKTAFR 530
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 531 ALQEQHSKSQEEIRSMAEDRQIQIKTLKE---------------METRNQVLEDEVQKIEEERRSLKDLNLSSEVSINCL 595
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVRIDNLQERLSEeysltleeaealenkIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEEL 998
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 778668981 596 RDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRKNLIMLEQIQFGG 652
Cdd:TIGR02168 999 KERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPKLFGG 1055
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
380-1012 |
3.72e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 3.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 380 DIIVNLEERVVHAE------EDARRYKVQSDEAQIEVLTIReaLAQLVEEtkaaglkhhlctekIAGLEHQISNAQDELE 453
Cdd:TIGR02168 193 DILNELERQLKSLErqaekaERYKELKAELRELELALLVLR--LEELREE--------------LEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 454 RLQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQKIGSQSVELIEKQKELGRLWTSIQDERMRYVENKTAFRALQ 533
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 534 EQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEVSINCLRDEMSNMTTNLEKLEANL 613
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 614 EFQLNQKNALEKEILC-----LKEELSDLKRknliMLEQIQFGGFAPENFGSSVKELRDENSKMIETIEVEKREKSALLE 688
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEaelkeLQAELEELEE----ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 689 KLKDMEEHSEKNTLLENAISN---------------LHIELESEQTKVKVLEECCQLL---------------------- 731
Cdd:TIGR02168 493 SLERLQENLEGFSEGVKALLKnqsglsgilgvlselISVDEGYEAAIEAALGGRLQAVvvenlnaakkaiaflkqnelgr 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 732 ---------------SEEKSTLVTEKAFLSSQLQMATENLEGQSEKNTLLE-----SSLSDANLERKQLAENvEKLHCLN 791
Cdd:TIGR02168 573 vtflpldsikgteiqGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvlvvDDLDNALELAKKLRPG-YRIVTLD 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 792 NDLEEKVRLLEGNLEDVQLKNLHLRKSLERSEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVIVKL 871
Cdd:TIGR02168 652 GDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISAL 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 872 SGDSKHLVREIASQRERNCTLEEELGKVQEDIKQHKHREKSLRCELVKKRMEVEICETQADELFGELQISNVHEIVFKEK 951
Cdd:TIGR02168 732 RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 778668981 952 LLELDEAYVNLETRSNYRDVKTDTTRERINNITDLNGELGVHLAKYTSAVTSLNDSVSYLE 1012
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
541-1012 |
5.35e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 64.29 E-value: 5.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 541 EEIRSMAEDRQIQIKTLKEmETRNQVLEDEVQKIEEERRSLKDLnlssevsINCLRDEMSNMTTNLEKLEANLEFQLNQK 620
Cdd:PRK02224 165 EEYRERASDARLGVERVLS-DQRGSLDQLKAQIEEKEEKDLHER-------LNGLESELAELDEEIERYEEQREQARETR 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 621 NALEkEILCLKEElsdlKRKNLIMLEQiqfggfapenfgsSVKELRdenskmiETIEVEKREKSALLEKLKDMEEHSEKn 700
Cdd:PRK02224 237 DEAD-EVLEEHEE----RREELETLEA-------------EIEDLR-------ETIAETEREREELAEEVRDLRERLEE- 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 701 tlLENAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQSEKNTLLESSLSDANLERKQL 780
Cdd:PRK02224 291 --LEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAEL 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 781 AENVEKLHCLNNDLEEKVRLLEGNLEDvqlknlhLRKSLERSEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAI 860
Cdd:PRK02224 369 ESELEEAREAVEDRREEIEELEEEIEE-------LRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 861 VEEKESVIV--------KLSGDSKHlVREIASQRERNCTLEEELGKVQEDIKQHKHREKSLRcELVKKRMEVEICETQAD 932
Cdd:PRK02224 442 VEEAEALLEagkcpecgQPVEGSPH-VETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERRE 519
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 933 ELfgELQISNVHEIV--FKEKLLELDEAYVNLETRSNYRDVKTDTTRERINNITDLNGELGVHLAKYTSAVTSLNDSVSY 1010
Cdd:PRK02224 520 DL--EELIAERRETIeeKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTL 597
|
..
gi 778668981 1011 LE 1012
Cdd:PRK02224 598 LA 599
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
436-928 |
7.72e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.54 E-value: 7.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 436 EKIAGLEHQISNAQDELERLqDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQKIGSQSVELIEKQKELgrlwTSI 515
Cdd:PRK03918 214 SELPELREELEKLEKEVKEL-EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL----KEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 516 QDERMRYVENKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEV--SIN 593
Cdd:PRK03918 289 KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyeEAK 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 594 CLRDEMSNMTT-----NLEKLEANLEFQLNQKNALEKEILCLKEELSDLK------RKNLIMLEQIQfgGFAP----ENF 658
Cdd:PRK03918 369 AKKEELERLKKrltglTPEKLEKELEELEKAKEEIEEEISKITARIGELKkeikelKKAIEELKKAK--GKCPvcgrELT 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 659 GSSVKELRDENSKMIETIEVEKREKSALLEKLKDMEEHSEKNTLLENAISNLH------IELESEQTKVKV--LEECCQL 730
Cdd:PRK03918 447 EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKelaeqlKELEEKLKKYNLeeLEKKAEE 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 731 LSEEKSTLVTEKAFLSSqLQMATENLEGQSEKNTLLESSLSDANLERKQLAENVEKLHCLN-NDLEEKVRLLEGNLED-V 808
Cdd:PRK03918 527 YEKLKEKLIKLKGEIKS-LKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESvEELEERLKELEPFYNEyL 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 809 QLKNLhlRKSLERSEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVivKLSGDSKHLVREIASQRER 888
Cdd:PRK03918 606 ELKDA--EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYE--ELREEYLELSRELAGLRAE 681
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 778668981 889 NCTLEEELGKVQEDIKQHKHREKSLRcelvKKRMEVEICE 928
Cdd:PRK03918 682 LEELEKRREEIKKTLEKLKEELEERE----KAKKELEKLE 717
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
499-938 |
1.01e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.12 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 499 VELIEKQKELGRLWTSIQDERMRYVENKTAFRALQEQHSKSQEEIRSMAEDR---QIQIKTLKEMETRNQVLEDEVQKIE 575
Cdd:TIGR04523 145 TEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLlklELLLSNLKKKIQKNKSLESQISELK 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 576 EERRSLKDLNLSSEVSINCLRDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDL-KRKNLIMLEQIQFGGFA 654
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELeKQLNQLKSEISDLNNQK 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 655 PENFGSSVKELRDENSKMIETIEVEKREKSALLEKLKDMEEHSEKN-TLLENAISNLHIELESEQTKVKVLEECCQLLSE 733
Cdd:TIGR04523 305 EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKElTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 734 EKSTLVTEKAFLSSQLQMATE---NLEG-----QSEKNTL------LESSLSDANLERKQLAENVEKLHCLNNDLEEKVR 799
Cdd:TIGR04523 385 EIKNLESQINDLESKIQNQEKlnqQKDEqikklQQEKELLekeierLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 800 LLEGNLEDVQLKNLHLRKSLERSEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVIVKLSGDSKHLV 879
Cdd:TIGR04523 465 SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLE 544
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 778668981 880 REIASQRER--NCTLEEELGKVQEDIKQHKHREKSLRCELVKKRMEVEICETQADELFGEL 938
Cdd:TIGR04523 545 DELNKDDFElkKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEI 605
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
160-955 |
1.84e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 62.68 E-value: 1.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 160 DKNQTSSKGSNLMAREKWLKHLNELFNSGATKKLSNSEDRTLRKGLNFHDLDLKEKKIESNGSHDLKHQVyVESERVDKA 239
Cdd:pfam02463 248 DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLK-ESEKEKKKA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 240 ETEIISLKNSLSKLEAEKEVG--------------LVQYNNSLQRLSKLESEVSRTQEDSRGLNERAGKAETEVLILKES 305
Cdd:pfam02463 327 EKELKKEKEEIEELEKELKELeikreaeeeeeeelEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 306 LAKLETERETSLLRYQQCLDKLSTLQDSILCVQKNVENTERASKAETEVERLKWEISRVESQREAALVQYRESSDIIVNL 385
Cdd:pfam02463 407 AQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQL 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 386 EERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAGLKHHLCTEKIAGLEHQISNAQDELERLQDEKDnGFAK 465
Cdd:pfam02463 487 ELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVE-ERQK 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 466 LKGAEERCLHLQRSNQILQSEMESMVQKIGSQSVELIEKQKELGRLWTSIQDERMRYVENKTAFRALQEQHSKSQEEIRS 545
Cdd:pfam02463 566 LVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKE 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 546 MAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEVSINCLRDEMSNmttnleKLEANLEFQLNQKNALEK 625
Cdd:pfam02463 646 SGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEI------KKKEQREKEELKKLKLEA 719
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 626 EILCLKEELSDLKRKNLIMLEQIQFGGFAPENFGSSVKELRDEnskmietiEVEKREKSALLEKLKDMEEHSEKNTLLEN 705
Cdd:pfam02463 720 EELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEK--------EEEKSELSLKEKELAEEREKTEKLKVEEE 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 706 AISNLHIELESEQTKVK-VLEECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQSEKNTLLESSLSDANLERKQLAENV 784
Cdd:pfam02463 792 KEEKLKAQEEELRALEEeLKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQE 871
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 785 EKLHCLNNDLEEKVRLLEGNLEDVQLKNLHLRKSLERSEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEK 864
Cdd:pfam02463 872 LLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKE 951
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 865 ESVIVKLSGDSKHLVREIASQRERNCTLEEELGKVQEDIKQHKHREKSLRCELVKKRMEVEICETQADELFGELQISNVH 944
Cdd:pfam02463 952 ENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINK 1031
|
810
....*....|.
gi 778668981 945 EIVFKEKLLEL 955
Cdd:pfam02463 1032 GWNKVFFYLEL 1042
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
436-704 |
1.98e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 1.98e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 436 EKIAGLEHQISNAQDELERLQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQ-------KIGSQSVELIEKQKEL 508
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKErleeleeDLSSLEQEIENVKSEL 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 509 GRLWTSIQDERMRYVENKTAFRALQ-----------EQHSKSQEEIRSMAEDRQIQI-KTLKEMETRNQVLEDEVQKIEE 576
Cdd:TIGR02169 761 KELEARIEELEEDLHKLEEALNDLEarlshsripeiQAELSKLEEEVSRIEARLREIeQKLNRLTLEKEYLEKEIQELQE 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 577 ERRSLKDlnlssevSINCLRDEMSNMTTNLEKLEANLEfqlnqknALEKEILCLKEELSDLKRKNLIMLEQIQFGGFAPE 656
Cdd:TIGR02169 841 QRIDLKE-------QIKSIEKEIENLNGKKEELEEELE-------ELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 778668981 657 NFGSSVKELRDENSKMIETIEVEKREKSALLEKLKDMEEHSEKNTLLE 704
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE 954
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
332-933 |
3.08e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.59 E-value: 3.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 332 DSILCVQKNVENTERASKAETEVErlkweisRVESQREAALVQYRESsdiIVNLEERVVHAEEDARRYKVQSDEAQIEVL 411
Cdd:PRK02224 156 DDLLQLGKLEEYRERASDARLGVE-------RVLSDQRGSLDQLKAQ---IEEKEEKDLHERLNGLESELAELDEEIERY 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 412 -TIREALAQLVEETKAAGLKHHLCTEKIAGLEHQISNAQDELERLQDEKDNGFAKLKGAEERCLHL--QRSNQILQSEME 488
Cdd:PRK02224 226 eEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELeeERDDLLAEAGLD 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 489 SMVQKIGSQSVELIEKQKELGRlwTSIQDERMRyvenktafralQEQHSKSQEEIRSMAEDRQIQIKTLKEmetRNQVLE 568
Cdd:PRK02224 306 DADAEAVEARREELEDRDEELR--DRLEECRVA-----------AQAHNEEAESLREDADDLEERAEELRE---EAAELE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 569 DEVQKIEEERRSLKDLNLSSEVSINCLRDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLkRKNLIMLEQI 648
Cdd:PRK02224 370 SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTA-RERVEEAEAL 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 649 QFGGFAPEnFGSSVK------------ELRDENSKMIETIEVEKREKSALLEKLKDMEE-HSEKNTLLENAiSNLHIELE 715
Cdd:PRK02224 449 LEAGKCPE-CGQPVEgsphvetieedrERVEELEAELEDLEEEVEEVEERLERAEDLVEaEDRIERLEERR-EDLEELIA 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 716 SEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQSEKNTLLESSLSDANLERKQLaENVEKLHCLNNDLE 795
Cdd:PRK02224 527 ERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAE 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 796 EKVRLLEGNLEDVQLKNLHLRKSL-ERSEQelleaeqilimmqneKSELHKRVKELSIvcEEAKAIVEEKESVIVKLSGd 874
Cdd:PRK02224 606 DEIERLREKREALAELNDERRERLaEKRER---------------KRELEAEFDEARI--EEAREDKERAEEYLEQVEE- 667
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 778668981 875 skhlvrEIASQRERNCTLEEELGKVQEDIKqhkhREKSLRCELVKKRMEVEICETQADE 933
Cdd:PRK02224 668 ------KLDELREERDDLQAEIGAVENELE----ELEELRERREALENRVEALEALYDE 716
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
174-882 |
3.73e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 3.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 174 REKWLKHLNELFNSGATKKL-SNSEDRTLRKGLNfhdlDLKEK-KIESNGSHDLKHQVYVESERVDKAETEIISLKNSLS 251
Cdd:TIGR04523 52 KEKELKNLDKNLNKDEEKINnSNNKIKILEQQIK----DLNDKlKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELN 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 252 KLEAEKEVGLVQYNNSLQRLSKLESEVSRTQEDSRGLNERAGKAETEVLILKESLAKLETERETSLLRYQQCLDKLSTLQ 331
Cdd:TIGR04523 128 KLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLK 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 332 DSIlcvqknventERASKAETEVERLKWEISRVESQREaalvqyressdiivnleervvhaeedarrykvqsdeaqievl 411
Cdd:TIGR04523 208 KKI----------QKNKSLESQISELKKQNNQLKDNIE------------------------------------------ 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 412 tirealaqlveetkaaglkhhLCTEKIAGLEHQISNAQDELERLQDEKDNGFAKLkgaEERCLHLQRSNQILqSEMESMV 491
Cdd:TIGR04523 236 ---------------------KKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL---SEKQKELEQNNKKI-KELEKQL 290
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 492 QKIGSQSVELiEKQKELGrlWTSIQDERMRYVENKtaFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVL---- 567
Cdd:TIGR04523 291 NQLKSEISDL-NNQKEQD--WNKELKSELKNQEKK--LEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKqrel 365
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 568 ---EDEVQKIEEERRSLKDLNLSSEVSINCLRDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRKNLIM 644
Cdd:TIGR04523 366 eekQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDL 445
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 645 LEQIQFGGFAPENFGSSVKELRDENSKMIETIEVEKRE----KSALLEKLKDMEEHSEKNTLLENAISNLHIELESEQTK 720
Cdd:TIGR04523 446 TNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNleqkQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEK 525
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 721 VKVLEeccqllsEEKSTLVTEKAFLSSQLQMATENLegqseKNTLLESSLSDANLERKQLAENVEKLHCLNNDLEEKVRL 800
Cdd:TIGR04523 526 IEKLE-------SEKKEKESKISDLEDELNKDDFEL-----KKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQ 593
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 801 LEGNLEDVQLKNLHLRKSLERSEQELLEA----EQILIMMQNEKSELHKRVKELSIVCEEAKAIVeEKESVIVKLSGDSK 876
Cdd:TIGR04523 594 KEKEKKDLIKEIEEKEKKISSLEKELEKAkkenEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR-NKWPEIIKKIKESK 672
|
....*.
gi 778668981 877 HLVREI 882
Cdd:TIGR04523 673 TKIDDI 678
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
226-825 |
1.43e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.75 E-value: 1.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 226 KHQVYVE--SERVDKAETEIISLKnslSKLEAEKEVGLVQYNNSLQRLSKLESEVSRTQ----EDSRGLNERAGKAETEV 299
Cdd:pfam15921 275 EHEVEITglTEKASSARSQANSIQ---SQLEIIQEQARNQNSMYMRQLSDLESTVSQLRselrEAKRMYEDKIEELEKQL 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 300 LILKESLAKLETERETSLLRYQQCLDKLSTL--------QDSILCVQKNVENTERASKAETEVERLKWEIS--RVESQRE 369
Cdd:pfam15921 352 VLANSELTEARTERDQFSQESGNLDDQLQKLladlhkreKELSLEKEQNKRLWDRDTGNSITIDHLRRELDdrNMEVQRL 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 370 AALVQYRESsDIIVNLEERVVHAE-EDARRYKVQSDEAQIEvlTIREALAQLVEETKAAGLKHHLCTEKIAGL------- 441
Cdd:pfam15921 432 EALLKAMKS-ECQGQMERQMAAIQgKNESLEKVSSLTAQLE--STKEMLRKVVEELTAKKMTLESSERTVSDLtaslqek 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 442 EHQISNAQDELERLQDEKDNGFAKLKGAEERCLHLQRsnqiLQSEMESMvqkigsqSVELIEKQKELGRLWTSIQDERMR 521
Cdd:pfam15921 509 ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRN----VQTECEAL-------KLQMAEKDKVIEILRQQIENMTQL 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 522 YVENKTAFRALQEQHSKSQEEIrsmaEDRQIQIKTLKEMETRNQvledevQKIEEERRSLKDLNLSSEVSINCLRDEMSN 601
Cdd:pfam15921 578 VGQHGRTAGAMQVEKAQLEKEI----NDRRLELQEFKILKDKKD------AKIRELEARVSDLELEKVKLVNAGSERLRA 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 602 mttnLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRknlimleqiqfggfapeNFGSSVKELRDENSKMIETIEVEKR 681
Cdd:pfam15921 648 ----VKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKR-----------------NFRNKSEEMETTTNKLKMQLKSAQS 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 682 EKSALLEKLKDMEE---HSEKNTL-LENAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLqmatenle 757
Cdd:pfam15921 707 ELEQTRNTLKSMEGsdgHAMKVAMgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQEL-------- 778
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 778668981 758 gqsekntllesslSDANLERKQLAENVEKLHCLNNDLEEKVRLLEGNLEDVQLKNLHLRKSLERSEQE 825
Cdd:pfam15921 779 -------------STVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQE 833
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
234-796 |
1.66e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.28 E-value: 1.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 234 ERVDKAETEIISLKNSLSKLEAEKEVG----------LVQYNNSLQRLSKLESEVSRTQEDSRGLNERAGKAETEVLILK 303
Cdd:PRK02224 206 ERLNGLESELAELDEEIERYEEQREQAretrdeadevLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 304 ESLAKLETERETSLLRYQqcldkLSTLQDSILCVQKNvENTERASKAETEVERLKWEISRVESQREAalvqYRESSDiiv 383
Cdd:PRK02224 286 ERLEELEEERDDLLAEAG-----LDDADAEAVEARRE-ELEDRDEELRDRLEECRVAAQAHNEEAES----LREDAD--- 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 384 NLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAglkhhlcTEKIAGLEHQISNAQDELERLQDEKDNGF 463
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL-------RERFGDAPVDLGNAEDFLEELREERDELR 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 464 AKLKGAEERclhlqrsnqiLQSEMEsmvqkigsqSVELIEKQKELGRLWTSIQD-ERMRYVENKTAFRALQEQHSKSQEE 542
Cdd:PRK02224 426 EREAELEAT----------LRTARE---------RVEEAEALLEAGKCPECGQPvEGSPHVETIEEDRERVEELEAELED 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 543 IRSMAEDRQIQIKTLKEMetrnQVLEDEVQKIEEERRSLKDLNLSSEVSINCLRDEMSNMTTNLEKLEANLEFQLNQKNA 622
Cdd:PRK02224 487 LEEEVEEVEERLERAEDL----VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 623 LEKEILCLKEELSDLKRK------NLIMLEQIQFGGFAPENFGSSVKELRdENSKMIETIEVEKREK-SALLEKLKDMEE 695
Cdd:PRK02224 563 AEEEAEEAREEVAELNSKlaelkeRIESLERIRTLLAAIADAEDEIERLR-EKREALAELNDERRERlAEKRERKRELEA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 696 HSEKNtllenaisnlhiELESEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLQMATENLEgqsEKNTLLEsslsdanl 775
Cdd:PRK02224 642 EFDEA------------RIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE---ELEELRE-------- 698
|
570 580
....*....|....*....|.
gi 778668981 776 ERKQLAENVEKLHCLNNDLEE 796
Cdd:PRK02224 699 RREALENRVEALEALYDEAEE 719
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
376-958 |
6.50e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.44 E-value: 6.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 376 RESSDIIVNLEERVVHAEEDARRYKVQSdEAQIEVL--TIREALAQLV--EETKAAGLkhhlcTEKIAGLEHQISNAQDE 451
Cdd:pfam15921 227 RELDTEISYLKGRIFPVEDQLEALKSES-QNKIELLlqQHQDRIEQLIseHEVEITGL-----TEKASSARSQANSIQSQ 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 452 LERLQDEKDNgfaklkgaeerclhlQRSNQILQ-SEMESMVQKIGSQsveliekQKELGRLWT-SIQD-ERMRYVENKTA 528
Cdd:pfam15921 301 LEIIQEQARN---------------QNSMYMRQlSDLESTVSQLRSE-------LREAKRMYEdKIEElEKQLVLANSEL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 529 FRALQEQHSKSQEeirSMAEDRQIQiKTLKEMETRnqvlEDEVQKIEEERRSLKDLNLSSEVSINCLRDEMSNMTTNLEK 608
Cdd:pfam15921 359 TEARTERDQFSQE---SGNLDDQLQ-KLLADLHKR----EKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQR 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 609 LEANL-------EFQLNQ-------KNALEKEILCLKEELSDLKRKNLIMLEQIQFGGFAPENFGSSVKELR---DENSK 671
Cdd:pfam15921 431 LEALLkamksecQGQMERqmaaiqgKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTaslQEKER 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 672 MIETIEVE-KREKSALLEKLKDMEEHSEKNTLLENAISNLHIELESEQTKVKVLEECCQLLsEEKSTLVTEKAFLSSQLQ 750
Cdd:pfam15921 511 AIEATNAEiTKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQI-ENMTQLVGQHGRTAGAMQ 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 751 MATENLEGQSEKNTLlesSLSDANLERKQLAENVEKLHCLNNDLE-EKVRLLEGNLE------DVQLKNLHLRKSLERSE 823
Cdd:pfam15921 590 VEKAQLEKEINDRRL---ELQEFKILKDKKDAKIRELEARVSDLElEKVKLVNAGSErlravkDIKQERDQLLNEVKTSR 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 824 QEL----LEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVIVKLSGDSKHLVR-------EIASQRERNCTL 892
Cdd:pfam15921 667 NELnslsEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKvamgmqkQITAKRGQIDAL 746
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 778668981 893 EEELGKVQEDIKQHKHREKSLRCELVKKRMEVEICETQADELFGELQISNVHEIVFKEKLLELDEA 958
Cdd:pfam15921 747 QSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVA 812
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
486-965 |
1.11e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.61 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 486 EMESMVQKIGSQSVELIEKQKELGRLwtsiQDERMRYVENKTAFRALQEQHSKSQEEIRSMAEDrqiqiktLKEMETRNQ 565
Cdd:PRK03918 201 ELEEVLREINEISSELPELREELEKL----EKEVKELEELKEEIEELEKELESLEGSKRKLEEK-------IRELEERIE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 566 VLEDEVQKIEEERRSLKDLNLSSE--VSINCLRDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRKNLI 643
Cdd:PRK03918 270 ELKKEIEELEEKVKELKELKEKAEeyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 644 MLEQIqfggfapENFGSSVKELRDENSKMIETIEVEKREKSALLEKLKDM-EEHSEKNTLLENAISNLHIELESEQTKVK 722
Cdd:PRK03918 350 LEKRL-------EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKElEELEKAKEEIEEEISKITARIGELKKEIK 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 723 VLEECCQLLSEEKSTLVTEKAFLSsqlqmatenlegQSEKNTLLESSLSDANLERKQLAENVEKLHCLNNDLEEKVRLLE 802
Cdd:PRK03918 423 ELKKAIEELKKAKGKCPVCGRELT------------EEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLK 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 803 GNLEDVQLKNL-------------HLRKSLERSEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVIV 869
Cdd:PRK03918 491 KESELIKLKELaeqlkeleeklkkYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEE 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 870 KLSGDSKHLVRE-IASQRERNCTLEE---------ELGKVQEDIKQHKHREKSLRCELVKKRMEVEICETQADELFGELQ 939
Cdd:PRK03918 571 ELAELLKELEELgFESVEELEERLKElepfyneylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650
|
490 500 510
....*....|....*....|....*....|..
gi 778668981 940 ISNV------HEIVfKEKLLELDEAYVNLETR 965
Cdd:PRK03918 651 ELEKkyseeeYEEL-REEYLELSRELAGLRAE 681
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
269-577 |
3.06e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.05 E-value: 3.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 269 QRLSKLESEVSRTQEDSRGLNE----RAGKAETEVLILKESlAKLETERETSLLRYQQcldklstlqdsilcVQKNVENT 344
Cdd:pfam17380 299 ERLRQEKEEKAREVERRRKLEEaekaRQAEMDRQAAIYAEQ-ERMAMERERELERIRQ--------------EERKRELE 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 345 E-RASKAETEVERLKwEISRVESQREAAlvqyressdiivnlEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEE 423
Cdd:pfam17380 364 RiRQEEIAMEISRMR-ELERLQMERQQK--------------NERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 424 TKAAGLKH--HLCTEKIAGLEH---QISNAQDELERL-QDEKDNGFAKL---KGAEERCLHLQRSNQILQSEMESMVQKI 494
Cdd:pfam17380 429 QEEARQREvrRLEEERAREMERvrlEEQERQQQVERLrQQEEERKRKKLeleKEKRDRKRAEEQRRKILEKELEERKQAM 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 495 GSQSVELIEKQKELGRLWTSI-QDERMRYVENKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQK 573
Cdd:pfam17380 509 IEEERKRKLLEKEMEERQKAIyEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKAR 588
|
....
gi 778668981 574 IEEE 577
Cdd:pfam17380 589 AEYE 592
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
241-802 |
3.34e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 241 TEIISLKNSLSKLEAEKEVGLVQYNNSLQRLSKLESEVSRTQEDSRGLNERAGKAETEVLILKESLAKLETE-------- 312
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEieeleekv 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 313 -RETSLLRYQQCLDKLSTLQDSILCVQKNVEntERASKAETEVERLKWEISRVESQREAAlvqyRESSDIIVNLEERVVH 391
Cdd:PRK03918 283 kELKELKEKAEEYIKLSEFYEEYLDELREIE--KRLSRLEEEINGIEERIKELEEKEERL----EELKKKLKELEKRLEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 392 AEEDARRY-KVQSDEAQIEVLTIREA---LAQLVEETKAAGLKHHLCTEKIAGLEHQISnaqdELERLQDEKDNGFAKLK 467
Cdd:PRK03918 357 LEERHELYeEAKAKKEELERLKKRLTgltPEKLEKELEELEKAKEEIEEEISKITARIG----ELKKEIKELKKAIEELK 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 468 GAEERCLHLQRS-----NQILQSEMESMVQKIGSQSVELIEKQKELGRlwtsiqdeRMRYVENKTafralqeqhsKSQEE 542
Cdd:PRK03918 433 KAKGKCPVCGRElteehRKELLEEYTAELKRIEKELKEIEEKERKLRK--------ELRELEKVL----------KKESE 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 543 IRSMAEDRQiQIKTLKEmETRNQVLEdEVQKIEEERRSLKDLnlssevsINCLRDEMSNMTTNLEKLEAnLEfqlNQKNA 622
Cdd:PRK03918 495 LIKLKELAE-QLKELEE-KLKKYNLE-ELEKKAEEYEKLKEK-------LIKLKGEIKSLKKELEKLEE-LK---KKLAE 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 623 LEKEILCLKEELSDLKRKnlimLEQIQFGGFapENFGSSVKELRDENSKMIETIEVEKrEKSALLEKLKDMEEHsekntl 702
Cdd:PRK03918 561 LEKKLDELEEELAELLKE----LEELGFESV--EELEERLKELEPFYNEYLELKDAEK-ELEREEKELKKLEEE------ 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 703 LENAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVTEKAF-LSSQLQMATENLEGQSEKNTLLESSLSDANLERKQLA 781
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLeLSRELAGLRAELEELEKRREEIKKTLEKLKEELEERE 707
|
570 580
....*....|....*....|.
gi 778668981 782 ENVEKLHCLNNDLEEKVRLLE 802
Cdd:PRK03918 708 KAKKELEKLEKALERVEELRE 728
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
436-654 |
3.40e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 436 EKIAGLEHQISNAQDELERLQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQKIGSQSVELIEKQKELGRLWTSI 515
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 516 QdERMRYV-----ENKTAFRALQE---QHSKSQEEIRSMAEDRQIQIKTLKEmetRNQVLEDEVQKIEEERRSLKDLNLS 587
Cdd:COG4942 107 A-ELLRALyrlgrQPPLALLLSPEdflDAVRRLQYLKYLAPARREQAEELRA---DLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 778668981 588 SEVSINCLRDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRKNLIMLEQIQFGGFA 654
Cdd:COG4942 183 LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
540-959 |
4.49e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 4.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 540 QEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLnlssEVSINCLRDEMSNMTTNLEKLEANLEFQLNQ 619
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL----KEEIEELEKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 620 KNALEKEILCLKEELSDLKRKNLIMLEQIQFGGFapenfgssVKELRDENSKMIETIEVEKREKSALLEKLKDMEEHSEK 699
Cdd:PRK03918 268 IEELKKEIEELEEKVKELKELKEKAEEYIKLSEF--------YEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 700 NTLLENAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQSEKNTL----LESSLSDANL 775
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEeiskITARIGELKK 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 776 ERKQLAENVEKLhclnNDLEEKVRLLEGNLEDVQLKNL--HLRKSLERSEQELLEAEQILIMMQNEKSELHKRVKELSIV 853
Cdd:PRK03918 420 EIKELKKAIEEL----KKAKGKCPVCGRELTEEHRKELleEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 854 CEEaKAIVEEKESVIVKLSG----DSKHLVREIASQRERNCTLEEELGKVQEDIKQHKHREKSLRcELVKKRMEVEICET 929
Cdd:PRK03918 496 IKL-KELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLA-ELEKKLDELEEELA 573
|
410 420 430
....*....|....*....|....*....|
gi 778668981 930 QADELFGELQISNVHEIvfKEKLLELDEAY 959
Cdd:PRK03918 574 ELLKELEELGFESVEEL--EERLKELEPFY 601
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
541-863 |
6.75e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 6.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 541 EEIRSMAE-DRQIQ-----IKTLKEMETRNQVLEDEV----QKIEEER-RSLKDLNLSSEvsincLRD-EMSNMTTNLEK 608
Cdd:TIGR02169 160 DEIAGVAEfDRKKEkaleeLEEVEENIERLDLIIDEKrqqlERLRREReKAERYQALLKE-----KREyEGYELLKEKEA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 609 LEANLEFQLNQKNALEKEILCLKEELSDL-KRKN--LIMLEQI-----QFGGFAPENFGSSVKELRDENSKMIETIEVEK 680
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELeKRLEeiEQLLEELnkkikDLGEEEQLRVKEKIGELEAEIASLERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 681 REKSALLEKLKDMEEHSEKntlLENAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQS 760
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDK---LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 761 EKNTLLESSLSDANLERKQLAENVEKLHCLNNDLEEKVRLLEGNLEDVQLKNLHLRKSLERSEQELLEAEQILIMMQNEK 840
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340 350
....*....|....*....|....*....|....
gi 778668981 841 -----------SELHKRVKELSIVCEEAKAIVEE 863
Cdd:TIGR02169 472 ydlkeeydrveKELSKLQRELAEAEAQARASEER 505
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
228-926 |
1.05e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 50.43 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 228 QVYVESERVDKAETEIISLKNSLSKLEaEKEVGLVQYNNSLQRLSKLESEVsrtQEDSRGLNERAGK----AETEVLILK 303
Cdd:TIGR00606 232 QLESSREIVKSYENELDPLKNRLKEIE-HNLSKIMKLDNEIKALKSRKKQM---EKDNSELELKMEKvfqgTDEQLNDLY 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 304 ESLAKLETERETSLLRYQQCLDKLStlQDSILCVQKNVENTERASKAETEVER-----LKWEISRVESQREAALVQYRES 378
Cdd:TIGR00606 308 HNHQRTVREKERELVDCQRELEKLN--KERRLLNQEKTELLVEQGRLQLQADRhqehiRARDSLIQSLATRLELDGFERG 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 379 SDI---IVNLEERVVHAEEDARRYKVQS-DEAQIEVLTIREALAQLVEETKAAGLKHHLCTEKIAGLEHQISNAQDELER 454
Cdd:TIGR00606 386 PFSerqIKNFHTLVIERQEDEAKTAAQLcADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQ 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 455 LQDEKDNGFAK---LKGAEERCLHLQRSNQILQSEMESMVQK-----IGSQSVELIEKQKELGRLWTSIQDERMRYVENK 526
Cdd:TIGR00606 466 LEGSSDRILELdqeLRKAERELSKAEKNSLTETLKKEVKSLQnekadLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKM 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 527 TAFRALQEQHSKSQEEIRSMAEDrqiqIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEVSINCLRDEMSNMTTNL 606
Cdd:TIGR00606 546 DKDEQIRKIKSRHSDELTSLLGY----FPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQL 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 607 EKLEANLeFQLNQKNALEKEILCLKEELSDlKRKNLIMLEQiqfggfAPENFGSSVKELRDENSKMIETIEVEKREKSAL 686
Cdd:TIGR00606 622 SSYEDKL-FDVCGSQDEESDLERLKEEIEK-SSKQRAMLAG------ATAVYSQFITQLTDENQSCCPVCQRVFQTEAEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 687 LEKLKDMEEHS----EKNTLLENAISNLHIELESEQTKVKVLEECCQL------------------LSEEKSTLVTEKAF 744
Cdd:TIGR00606 694 QEFISDLQSKLrlapDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLkekeipelrnklqkvnrdIQRLKNDIEEQETL 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 745 LSS-------------------QLQMATENLEGQSEKNTLlESSLSDANLERKQLAENVEKLHCLNNDLEEKVRLLEGNL 805
Cdd:TIGR00606 774 LGTimpeeesakvcltdvtimeRFQMELKDVERKIAQQAA-KLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLI 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 806 EDVQLKNLHLRKSLERSEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVIVKLSGDSKHLVREIASQ 885
Cdd:TIGR00606 853 QDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 778668981 886 RERNCTLEEELGKVQEDIKQHKHREKSLR------CELVKKRMEVEI 926
Cdd:TIGR00606 933 ETSNKKAQDKVNDIKEKVKNIHGYMKDIEnkiqdgKDDYLKQKETEL 979
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
269-1030 |
1.13e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 50.35 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 269 QRLSKLESEVSRTQEDSRGLNERAGKAETEVLILKESLAKLETERETSLLRYQQC---LDKLSTLQDSILC--------V 337
Cdd:TIGR00618 100 HRKTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLPQGEFaqfLKAKSKEKKELLMnlfpldqyT 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 338 QKNVENTERASKAETEVERLKWEISRVESQREAALVQYRESSDIIVNLEERVVHAEEDARR---YKVQSDEAQIEVLTIR 414
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQshaYLTQKREAQEEQLKKQ 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 415 EALAQLVEETkaaglkhhlctEKIAGLEHQISNAQDELERlQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESMVQKI 494
Cdd:TIGR00618 260 QLLKQLRARI-----------EELRAQEAVLEETQERINR-ARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLL 327
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 495 GSQSVEL-----IEKQKELGRLWTSIQDERMRYVENKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLED 569
Cdd:TIGR00618 328 MKRAAHVkqqssIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQR 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 570 EVQKIEEERRSLKDLNLssevsinclrdemsnmttnlEKLEANLEFQLNQKNALEKEiLCLKEELSDLKRKNLIMLEQIQ 649
Cdd:TIGR00618 408 EQATIDTRTSAFRDLQG--------------------QLAHAKKQQELQQRYAELCA-AAITCTAQCEKLEKIHLQESAQ 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 650 fggfapenfgsSVKElRDENSKMIETIEVEKREKSALLEKLKdmEEHSEKNTLLENAISNLHIELESEQTKVKVLEECCQ 729
Cdd:TIGR00618 467 -----------SLKE-REQQLQTKEQIHLQETRKKAVVLARL--LELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQR 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 730 LLSEEKStLVTEKAFLSSQLQMATENLEGQSEKNTLLESSLSDANLERKQLAENVEKLHCLNNDL---------EEKVRL 800
Cdd:TIGR00618 533 GEQTYAQ-LETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLqdlteklseAEDMLA 611
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 801 LEGNLEDVQL--------KNLHLRKSLERSEQELLEAEQILIMMQNEKSELH-KRVKELSI-VCEEAKAIVEEKESVIVK 870
Cdd:TIGR00618 612 CEQHALLRKLqpeqdlqdVRLHLQQCSQELALKLTALHALQLTLTQERVREHaLSIRVLPKeLLASRQLALQKMQSEKEQ 691
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 871 LSGD------SKHLVREIASQRERNCTLEEELGKVQEDIKQHKHREKSLRCELVKKRMEVEicETQADELFGELQISNVH 944
Cdd:TIGR00618 692 LTYWkemlaqCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQA--RTVLKARTEAHFNNNEE 769
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 945 EIVFKEKLLELDEAYVNLETRSNYRDVKTDTTRERINNI-TDLNGELGVHLAKYTSAVTSLNDSVSYLE-NHTLLGRKTH 1022
Cdd:TIGR00618 770 VTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIgQEIPSDEDILNLQCETLVQEEEQFLSRLEeKSATLGEITH 849
|
....*...
gi 778668981 1023 KYEKQEDT 1030
Cdd:TIGR00618 850 QLLKYEEC 857
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
224-477 |
1.90e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 224 DLKHQVYVESERVDKAEteiislknSLSKLEAEKEVGLVQYNNSLQRLSKLESEVSRTQEDSRGLNERAGKAETEVLILK 303
Cdd:PRK02224 486 DLEEEVEEVEERLERAE--------DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR 557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 304 ESLAKLETERETSLLRYQQCLDKLSTLQDSILCVQKNVENTERASKAETEVERL---KWEISRVESQREAALVQYRESSD 380
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLrekREALAELNDERRERLAEKRERKR 637
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 381 iivNLEERVvhaeEDARRYKVQSDEAQIEvltirEALAQLVEETKAAglkhhlcTEKIAGLEHQISNAQDELERLQDEKD 460
Cdd:PRK02224 638 ---ELEAEF----DEARIEEAREDKERAE-----EYLEQVEEKLDEL-------REERDDLQAEIGAVENELEELEELRE 698
|
250
....*....|....*..
gi 778668981 461 ngfaKLKGAEERCLHLQ 477
Cdd:PRK02224 699 ----RREALENRVEALE 711
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
654-1080 |
2.43e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 2.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 654 APENFGSSVKELRDENSKMIETIEVEKREKSALLEKLKDMEEHSEKNTLLENAISNLHIELESEQTKVKVLEECCQLLSE 733
Cdd:PRK03918 163 AYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 734 ---EKSTLVTEKAFLSSQLQMATENLEGQSEKNTLLESSLSDANlERKQLAENVEKLHCLNNDLEEKVRLLEGNLEDV-- 808
Cdd:PRK03918 243 lekELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK-ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLee 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 809 QLKNLHLR-KSLERSEQELLEAEQILIMMQNEKSELHKRVKELsivcEEAKAIVEEKESVIVKLSGDSKH-LVREIASQR 886
Cdd:PRK03918 322 EINGIEERiKELEEKEERLEELKKKLKELEKRLEELEERHELY----EEAKAKKEELERLKKRLTGLTPEkLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 887 ERNCTLEEELGKVQEDIKQHKHREKSLRC---ELVKKRMEVEIC-----ETQADELFGE--LQISNVHE--IVFKEKLLE 954
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELKKaieELKKAKGKCPVCgreltEEHRKELLEEytAELKRIEKelKEIEEKERK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 955 LDEAYVNLETRSNyRDVKTDTTRERINNITDLNGELGVHLAKYTSAVTslndsvsylENHTLLGRKTHKYEKQEDTHSVN 1034
Cdd:PRK03918 478 LRKELRELEKVLK-KESELIKLKELAEQLKELEEKLKKYNLEELEKKA---------EEYEKLKEKLIKLKGEIKSLKKE 547
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 778668981 1035 HQYSEGYQQRYHDLISTLHNGTFELKDLHRRIQAVEMAVIEKVKLE 1080
Cdd:PRK03918 548 LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEER 593
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
312-743 |
4.01e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 4.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 312 ERETSLLRYQQCLDKLSTLQDSIlcvqknVENTERASKAETEVERLKWEIsrvesQREAALVQYRESSDIIVNLEERVVH 391
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEEL------EELEAELEELREELEKLEKLL-----QLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 392 AEEDARRYK---VQSDEAQIEVLTIREALAQLVEETKAAGLKH-HLCTEKIAGLEHQISNAQDELERLQDEKDNGFAKLK 467
Cdd:COG4717 151 LEERLEELReleEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 468 GAEERCLHLQRSNQILQSEM-----------ESMVQKIGSQSVELIEKQKELGRL----WTSIQDERMRYVENKTAFRAL 532
Cdd:COG4717 231 QLENELEAAALEERLKEARLllliaaallalLGLGGSLLSLILTIAGVLFLVLGLlallFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 533 QEQHSKSQEEIRSMAEDRQIQIKTLKEmetRNQVLEDEVQKIEEERRSLKDLNlsSEVSINCLRDEMSNM-----TTNLE 607
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPE---ELLELLDRIEELQELLREAEELE--EELQLEELEQEIAALlaeagVEDEE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 608 KLEANLEfQLNQKNALEKEILCLKEELSDLKRKNLIMLEQIQFGGFAPENfgSSVKELRDENSKMIETIEVEKREKSALL 687
Cdd:COG4717 386 ELRAALE-QAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEEL--EELEEELEELEEELEELREELAELEAEL 462
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 778668981 688 EKLKDMEEHSEKNTLLENAISNLHIELESEQTK---VKVLEECCQLLSEEKSTLVTEKA 743
Cdd:COG4717 463 EQLEEDGELAELLQELEELKAELRELAEEWAALklaLELLEEAREEYREERLPPVLERA 521
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
374-582 |
5.00e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 5.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 374 QYRESSDIIVNLEERVVH---AEEDARRYkvqsDEAQIEVLTIREALAQLveETKAAGLKHHLctekiagLEHQISNAQD 450
Cdd:COG4913 236 DLERAHEALEDAREQIELlepIRELAERY----AAARERLAELEYLRAAL--RLWFAQRRLEL-------LEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 451 ELERLQDEKDNGFAKLKGAEERCLHLQRsnQILQS---EMESMVQKIGSQSVELIEKQKELGRLWTSIQDERMRYVENKT 527
Cdd:COG4913 303 ELARLEAELERLEARLDALREELDELEA--QIRGNggdRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 778668981 528 AFRALQEQhskSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLK 582
Cdd:COG4913 381 EFAALRAE---AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
266-461 |
1.06e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 266 NSLQRLSKLESEVSRTQE------DSRGLNERAGKAETEVLILKESLAKLETEREtsllryQQCLDKLSTLQDsilcvqk 339
Cdd:COG4913 232 EHFDDLERAHEALEDAREqiellePIRELAERYAAARERLAELEYLRAALRLWFA------QRRLELLEAELE------- 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 340 nvENTERASKAETEVERLKWEISRVESQREAALVQYRESSDI--------IVNLEERVVHAEEDARRYKVQSDEAQIEVL 411
Cdd:COG4913 299 --ELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDrleqlereIERLERELEERERRRARLEALLAALGLPLP 376
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 778668981 412 TIREALAQLVEETKA----AGLKHHLCTEKIAGLEHQISNAQDELERLQDEKDN 461
Cdd:COG4913 377 ASAEEFAALRAEAAAlleaLEEELEALEEALAEAEAALRDLRRELRELEAEIAS 430
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
599-846 |
1.75e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 45.57 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 599 MSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRKNLIMLEQiqfggFAPENFGSSVKELRDENSKMIETIEV 678
Cdd:pfam15905 96 LQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRVNELLKAK-----FSEDGTQKKMSSLSMELMKLRNKLEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 679 EKREKSALLEKL--------KDMEEHSEKNTLLENAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVTEKAflssQLQ 750
Cdd:pfam15905 171 KMKEVMAKQEGMegklqvtqKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKL----DIA 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 751 MATENLEGQSEKNTLLESSLSdanlerkqlaENVEKLHCLNNDLEEKVRLLEGNLEDVQLKNlhlRKSLERSEQELLEAE 830
Cdd:pfam15905 247 QLEELLKEKNDEIESLKQSLE----------EKEQELSKQIKDLNEKCKLLESEKEELLREY---EEKEQTLNAELEELK 313
|
250
....*....|....*.
gi 778668981 831 QILIMMQNEKSELHKR 846
Cdd:pfam15905 314 EKLTLEEQEHQKLQQK 329
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
402-584 |
2.05e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 402 QSDEAQIEVLTIREALAQLVEETKAAGLKHHLCTEKIAGLEHQISNAQDELERLQDEKDNGFAKLKGAEERCLHLQRSNQ 481
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 482 ILQSEMESMV---QKIGSQS-----------VELIEKQKELGRLWTSIQDERMRYVENKTAFRALQEQHSKSQEEIRSMA 547
Cdd:COG4942 101 AQKEELAELLralYRLGRQPplalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALL 180
|
170 180 190
....*....|....*....|....*....|....*...
gi 778668981 548 EDRQIQIKTL-KEMETRNQVLEDEVQKIEEERRSLKDL 584
Cdd:COG4942 181 AELEEERAALeALKAERQKLLARLEKELAELAAELAEL 218
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
288-587 |
2.09e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 288 LNERAGKAETEVLILKESLAKLETERETsLLRYQQCLDKLSTLQDSILcvqknventeraskaetEVERLKWEISRVESQ 367
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDA-LQERREALQRLAEYSWDEI-----------------DVASAEREIAELEAE 676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 368 REAAlvqyRESSDIIVNLEERVvhaeedarrykvqsDEAQIEVLTIREALAQLVEETKAAGlkhhlctEKIAGLEHQISN 447
Cdd:COG4913 677 LERL----DASSDDLAALEEQL--------------EELEAELEELEEELDELKGEIGRLE-------KELEQAEEELDE 731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 448 AQDELERLQDEKDNG----FAKLKGAEERCLHLQRSNQILQSEMESMVQKIGSQSVELIEKQKELGRLWTSIQDERMRYV 523
Cdd:COG4913 732 LQDRLEAAEDLARLElralLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADL 811
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 524 ENKTAFRALqeqHSKSQEEIRSMAEDRqiqiktLKEMETRNQV--LEDEVQKIEEERRS----LKDLNLS 587
Cdd:COG4913 812 ESLPEYLAL---LDRLEEDGLPEYEER------FKELLNENSIefVADLLSKLRRAIREikerIDPLNDS 872
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
376-613 |
2.12e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 45.66 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 376 RESSDIIVNLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAglkhhlcTEKIAGLEHQISNAQDELERL 455
Cdd:pfam07888 41 QERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQS-------REKHEELEEKYKELSASSEEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 456 QDEKDngfaklKGAEERCLHLQRSNQiLQSEMESMVQKIGSQSVEL---IEKQKELGRLWTSIQDERmryvenktafRAL 532
Cdd:pfam07888 114 SEEKD------ALLAQRAAHEARIRE-LEEDIKTLTQRVLERETELermKERAKKAGAQRKEEEAER----------KQL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 533 QEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIE-----------------EERRSLKDLNLSSEVSINCL 595
Cdd:pfam07888 177 QAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTqklttahrkeaeneallEELRSLQERLNASERKVEGL 256
|
250
....*....|....*...
gi 778668981 596 RDEMSNMTTNLEKLEANL 613
Cdd:pfam07888 257 GEELSSMAAQRDRTQAEL 274
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
233-468 |
2.18e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 2.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 233 SERVDKAETEIISLKNSLSKLEAEKEVGLVQYNNSLQRLSKLESEVSRTQEDSRGLNERAGKAETEVLILKESLAKLETE 312
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 313 RET------SLLRYQQCLDKLSTL-----QDSILCVQKNVENTERASKA-ETEVERLKWEISRVESQREAALVQYRESSD 380
Cdd:COG4942 99 LEAqkeelaELLRALYRLGRQPPLalllsPEDFLDAVRRLQYLKYLAPArREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 381 IIVNLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAglkhhlcTEKIAGLEHQISNAQDElerlqdEKD 460
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEL-------EALIARLEAEAAAAAER------TPA 245
|
....*...
gi 778668981 461 NGFAKLKG 468
Cdd:COG4942 246 AGFAALKG 253
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
384-624 |
2.74e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 384 NLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAGLkhhlcTEKIAGLEHQISNAQDELERLQdekdngf 463
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDL-----SEEAKLLLQQLSELESQLAEAR------- 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 464 AKLKGAEERclhLQRSNQILQSEMESMVQkiGSQSVELIEKQKELGRLWTSIQDERMRYVENKTAFRALQEQHSKSQEEI 543
Cdd:COG3206 233 AELAEAEAR---LAALRAQLGSGPDALPE--LLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 544 RSMAEDRQIQIKT-LKEMETRNQVLEDEVQKIEEERRSLKDlnlssevsincLRDEMSNMTTNLEKLEANLEFQLNQKNA 622
Cdd:COG3206 308 QQEAQRILASLEAeLEALQAREASLQAQLAQLEARLAELPE-----------LEAELRRLEREVEVARELYESLLQRLEE 376
|
..
gi 778668981 623 LE 624
Cdd:COG3206 377 AR 378
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
518-848 |
2.84e-04 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 45.21 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 518 ERMRYVENKTAFRALQEQHSKSQEEIRSMAEDrqiqIKTLKEMETRNQVLEDEV-QKIEEERRSLKDLNLSSEVSINCLR 596
Cdd:PRK04778 96 DKFRFRKAKHEINEIESLLDLIEEDIEQILEE----LQELLESEEKNREEVEQLkDLYRELRKSLLANRFSFGPALDELE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 597 DEMSNMTTNLEKLEanlefQLNQK-NALE--KEILCLKEELSDLKRknliMLEQI-------------QFggfapENFGS 660
Cdd:PRK04778 172 KQLENLEEEFSQFV-----ELTESgDYVEarEILDQLEEELAALEQ----IMEEIpellkelqtelpdQL-----QELKA 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 661 SVKELRDEN--------SKMIETIEVEKREKSALLEKLkDMEEHSEKNTLLENAISNLHIELESE-------QTKVKVLE 725
Cdd:PRK04778 238 GYRELVEEGyhldhldiEKEIQDLKEQIDENLALLEEL-DLDEAEEKNEEIQERIDQLYDILEREvkarkyvEKNSDTLP 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 726 ECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQSEkntlLESSLSDANLERKQLAENVEKLHCLNNDLEEKVRLLEGNL 805
Cdd:PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQ----LEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQL 392
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 778668981 806 EDVQLKNLHLRKSLERSEQELLEAEQILIMMQNEKSELHKRVK 848
Cdd:PRK04778 393 EEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLE 435
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
408-850 |
3.07e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 408 IEVLTIREALAQLVEETKAAGLKHHLCTEKIAGLEHQISNAQDELERLQDEKDngfaKLKGAEERCLHLQRSNQILQSEM 487
Cdd:COG4717 43 IRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQE----ELEELEEELEELEAELEELREEL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 488 ESMvqkigsqsveliEKQKELGRLWTSIQDERMRYVENKTAFRALQEQhsksqeeirsmaedrqiqIKTLKEMETRNQVL 567
Cdd:COG4717 119 EKL------------EKLLQLLPLYQELEALEAELAELPERLEELEER------------------LEELRELEEELEEL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 568 EDEVQKIEEE-RRSLKDLNLSSEVSINCLRDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRKNLIMLE 646
Cdd:COG4717 169 EAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEA 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 647 QIQFGGFAP----ENFGSSVKELRDENSKMIETI--------EVEKREKSALLEKLKDMEEHSEKNTLLENAISNL--HI 712
Cdd:COG4717 249 RLLLLIAAAllalLGLGGSLLSLILTIAGVLFLVlgllallfLLLAREKASLGKEAEELQALPALEELEEEELEELlaAL 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 713 ELESEQTKVKVLEECCQLlsEEKSTLVTEKAFLSSQLQMAtenlEGQSEKNTLLESSLSDANLERKQLAENVEKLHCLNN 792
Cdd:COG4717 329 GLPPDLSPEELLELLDRI--EELQELLREAEELEEELQLE----ELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKE 402
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 778668981 793 DLEEKVRLLEGNLEDVQLKNLH-----LRKSLERSEQELLEAEQILIMMQNEKSELHKRVKEL 850
Cdd:COG4717 403 ELEELEEQLEELLGELEELLEAldeeeLEEELEELEEELEELEEELEELREELAELEAELEQL 465
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
436-938 |
3.39e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.17 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 436 EKIAGLEHQISNAQDELERLQDEKDNGFAKLKGAEERCLHLQRSNQILQSE---MESMVQKIGSQSVELIEKQKELGRLw 512
Cdd:pfam01576 103 QHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKErklLEERISEFTSNLAEEEEKAKSLSKL- 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 513 tsiqdermryvENKtafralqeqhsksQEEIRSMAEDRqiqiktLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEVSI 592
Cdd:pfam01576 182 -----------KNK-------------HEAMISDLEER------LKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQI 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 593 NCLRDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRKNLIMLEQIQFGGFAPENFGSSVKELRDENSKM 672
Cdd:pfam01576 232 AELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDT 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 673 IETIEVE-----KREKS-ALLEKLKDMEEHSEKNTLLE------NAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVT 740
Cdd:pfam01576 312 LDTTAAQqelrsKREQEvTELKKALEEETRSHEAQLQEmrqkhtQALEELTEQLEQAKRNKANLEKAKQALESENAELQA 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 741 EKAFLsSQLQMATEN----LEGQSEKntlLESSLSDANLERKQLAenvEKLHCLNNDLEEkvrlLEGNLEDVQLKNLHLR 816
Cdd:pfam01576 392 ELRTL-QQAKQDSEHkrkkLEGQLQE---LQARLSESERQRAELA---EKLSKLQSELES----VSSLLNEAEGKNIKLS 460
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 817 KSLERSEQELLEAEQILIMMQNEKSELHKRVKELSivcEEAKAIVEEKESVIVKLSGDSKHLVREIASQRERNCTLEEEL 896
Cdd:pfam01576 461 KDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLE---DERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDA 537
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 778668981 897 GKV---QEDIKQHKHREKSLRCELVKKRMEVEICETQADELFGEL 938
Cdd:pfam01576 538 GTLealEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQEL 582
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
269-458 |
4.54e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 4.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 269 QRLSKLESEVSRTQEDSRGLNERAGKAETEVLILKESLAKLETERETS--LLRYQQCLDKLSTLQDSIlcvqknventER 346
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdEIDVASAEREIAELEAEL----------ER 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 347 ASKAETEVERLKWEISRVESQREAALVQYRESSDIIVNLEERVVHAEEDARRYKVQSDEA-----QIEVLTIREALAQLV 421
Cdd:COG4913 680 LDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAedlarLELRALLEERFAAAL 759
|
170 180 190
....*....|....*....|....*....|....*..
gi 778668981 422 EETKAAGLKHHLcTEKIAGLEHQISNAQDELERLQDE 458
Cdd:COG4913 760 GDAVERELRENL-EERIDALRARLNRAEEELERAMRA 795
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
741-939 |
4.87e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 741 EKAFLSSQLQMATENLEGQSEKNTLLESSLSDANLERKQLAENVEKLHCLNNDLEEKVRLLEGNLEDVQLKNLHLRKSLE 820
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 821 RSEQELleAEQI-------------LIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVIVKLSGDSKHLVREIASQRE 887
Cdd:COG4942 101 AQKEEL--AELLralyrlgrqpplaLLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 778668981 888 RNCTLEEELGKVQEDIKQHKHREKSLRCELVKKRMEVEICETQADELFGELQ 939
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
382-909 |
4.88e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 44.73 E-value: 4.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 382 IVNLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAGLKHHLCTEKIAGLEHQISNA-QDELERLQDEKD 460
Cdd:pfam05557 4 LIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEAlREQAELNRLKKK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 461 NGFAKLKGAEERCLHLQRSNQI---LQSEMESMVQKIGSQSVELIEKQKELGRLWtsiqdermryvenktafRALQEQHS 537
Cdd:pfam05557 84 YLEALNKKLNEKESQLADAREViscLKNELSELRRQIQRAELELQSTNSELEELQ-----------------ERLDLLKA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 538 KSQEeIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNlssevsinclrDEMSNMTTnLEKLEANLEFQL 617
Cdd:pfam05557 147 KASE-AEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSK-----------SELARIPE-LEKELERLREHN 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 618 NQKNALEKEILCLKEELSDLKRKnlimLEQiqfggfapenfgssVKELRDEnskmIETIEVEKREKSALLEKLKDMEEHS 697
Cdd:pfam05557 214 KHLNENIENKLLLKEEVEDLKRK----LER--------------EEKYREE----AATLELEKEKLEQELQSWVKLAQDT 271
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 698 EKNTLLENAISNLHIELESEQT--KVKVLEECCQLLSEEKST--LVTEKAFLSSQLQMATENLEGQSEKNTLLESSLSDA 773
Cdd:pfam05557 272 GLNLRSPEDLSRRIEQLQQREIvlKEENSSLTSSARQLEKARreLEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLL 351
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 774 NLER---KQLAENVEKLHCLNN---DLEEKVRLLEGNLEDVQLKNLHLRKSLERSEQELLEAEQILIMMQNEKSELHKRV 847
Cdd:pfam05557 352 TKERdgyRAILESYDKELTMSNyspQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQE 431
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 778668981 848 KElsivcEEAKAIVEEKESVIVKLsgdsKHLVREIASQRERNCTLEEELGK--VQEDIKQHKHR 909
Cdd:pfam05557 432 SL-----ADPSYSKEEVDSLRRKL----ETLELERQRLREQKNELEMELERrcLQGDYDPKKTK 486
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
294-786 |
6.13e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 6.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 294 KAETEVLILKESLAKLETERETSLLRYQQCLDKLSTLQDSILCVQKnVENTERASKAETEVERLKWEISRVESQReaalv 373
Cdd:pfam01576 135 KLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSK-LKNKHEAMISDLEERLKKEEKGRQELEK----- 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 374 QYRESSDIIVNLEERVVHAEEDARRYKVQSDEAQIEVLTireALAQLVEET--KAAGLKhhlcteKIAGLEHQISNAQDE 451
Cdd:pfam01576 209 AKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQA---ALARLEEETaqKNNALK------KIRELEAQISELQED 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 452 L--ERLQDEKdngfaklkgAEERCLHLQRSNQILQSEMESMVQKIGSQSVELIEKQKELGRLWTSIQDERMRY------- 522
Cdd:pfam01576 280 LesERAARNK---------AEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHeaqlqem 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 523 -VENKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERR----SLKDLNL---SSEVSINC 594
Cdd:pfam01576 351 rQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKklegQLQELQArlsESERQRAE 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 595 LRDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKrknlimlEQIQFGGFAPENFGSSVKELRDEnskmie 674
Cdd:pfam01576 431 LAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQ-------ELLQEETRQKLNLSTRLRQLEDE------ 497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 675 tievekreKSALLEKLkdmEEHSEKNTLLENAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLQMATE 754
Cdd:pfam01576 498 --------RNSLQEQL---EEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAA 566
|
490 500 510
....*....|....*....|....*....|....*
gi 778668981 755 NLEGQSEKNTLLESSLSDANLE---RKQLAENVEK 786
Cdd:pfam01576 567 AYDKLEKTKNRLQQELDDLLVDldhQRQLVSNLEK 601
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
263-649 |
6.66e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 6.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 263 QYNNSLQRLSKLESEVSRTQEDSRGLNERAGKAET--EVLILKESLAKLETERETSLLRYQQCLDKLSTLQDsilcvqkn 340
Cdd:COG4717 89 EYAELQEELEELEEELEELEAELEELREELEKLEKllQLLPLYQELEALEAELAELPERLEELEERLEELRE-------- 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 341 venteraskAETEVERLKWEISRVESQREAALVQYRESS-DIIVNLEERVVHAEEDARRYKVQSDEAQIEVLTIREALAQ 419
Cdd:COG4717 161 ---------LEEELEELEAELAELQEELEELLEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 420 LVEETKAAGLKHHLCTEK--------IAGLEHQISNAQDELERLQD--------------EKDNGFAKLKGAEERCLHLQ 477
Cdd:COG4717 232 LENELEAAALEERLKEARlllliaaaLLALLGLGGSLLSLILTIAGvlflvlgllallflLLAREKASLGKEAEELQALP 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 478 RSNQILQSEMESMVQKIG-------SQSVELIEKQKELGRLWTSIQD--ERMRYVENKTAFRAL-QEQHSKSQEEIRSMA 547
Cdd:COG4717 312 ALEELEEEELEELLAALGlppdlspEELLELLDRIEELQELLREAEEleEELQLEELEQEIAALlAEAGVEDEEELRAAL 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 548 EdrqiQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEvsincLRDEMSNMTTNLEKLEANLEFQLNQKNALEKEI 627
Cdd:COG4717 392 E----QAEEYQELKEELEELEEQLEELLGELEELLEALDEEE-----LEEELEELEEELEELEEELEELREELAELEAEL 462
|
410 420
....*....|....*....|....
gi 778668981 628 --LCLKEELSDLKRKNLIMLEQIQ 649
Cdd:COG4717 463 eqLEEDGELAELLQELEELKAELR 486
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
663-977 |
6.77e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.30 E-value: 6.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 663 KELRDENSKMIETIEVEKREKSAlleKLKDMEEHSEKNTLLENAISnlhielESEQTKVKVLEECCQLLSEEKSTLVTEK 742
Cdd:COG5022 810 KEYRSYLACIIKLQKTIKREKKL---RETEEVEFSLKAEVLIQKFG------RSLKAKKRFSLLKKETIYLQSAQRVELA 880
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 743 AFLSSQLQMATENLEGQSEKNTLLESSLSD-ANLERKQLAENVEklHCLNNDLEEKVRLLEGNLEDVQLKNLHLRKSLER 821
Cdd:COG5022 881 ERQLQELKIDVKSISSLKLVNLELESEIIElKKSLSSDLIENLE--FKTELIARLKKLLNNIDLEEGPSIEYVKLPELNK 958
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 822 -------SEQELLEAEQILIMMQNEKSELHKRVKELSIVCEEAKAIVEEKESVIVKLSGdSKHLVREIASqrernctlee 894
Cdd:COG5022 959 lheveskLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQ-LKELPVEVAE---------- 1027
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 895 elgkVQEDIKQHKHREKSLRCEL----VKKRMEVEICETQADELFGELQISNVHEIvfkEKLLELDEAYVNLETRSNYRD 970
Cdd:COG5022 1028 ----LQSASKIISSESTELSILKplqkLKGLLLLENNQLQARYKALKLRRENSLLD---DKQLYQLESTENLLKTINVKD 1100
|
....*..
gi 778668981 971 VKTDTTR 977
Cdd:COG5022 1101 LEVTNRN 1107
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
682-850 |
7.51e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.01 E-value: 7.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 682 EKSALLEKLKDMEEHSEKNtllENAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQSE 761
Cdd:pfam01576 97 EKKKMQQHIQDLEEQLDEE---EAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEE 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 762 KNTLL-------ESSLSDANLERKQLAENVEKLHCLNNDLEEKVRLLEGNLEDVQLKNLHLRKSLERSEQELLEAEQILI 834
Cdd:pfam01576 174 KAKSLsklknkhEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLE 253
|
170
....*....|....*.
gi 778668981 835 MMQNEKSELHKRVKEL 850
Cdd:pfam01576 254 EETAQKNNALKKIREL 269
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
192-735 |
7.87e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.30 E-value: 7.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 192 KLSNSEDRTLRKGLNF-HDLDLKEKKIESNGshDLKHQVYVESERVDKaeteiislKNSLSKLEAEKEVGLVQYNNSLQR 270
Cdd:COG5022 910 ELKKSLSSDLIENLEFkTELIARLKKLLNNI--DLEEGPSIEYVKLPE--------LNKLHEVESKLKETSEEYEDLLKK 979
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 271 LSKLESEVSRTQEDSRGLNERAGKAETEVLILKESLAKLEtERETSLLRYQQCLDKLSTlQDSILCVQKNVENTERASka 350
Cdd:COG5022 980 STILVREGNKANSELKNFKKELAELSKQYGALQESTKQLK-ELPVEVAELQSASKIISS-ESTELSILKPLQKLKGLL-- 1055
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 351 ETEVERLKWEIsrvesqreAALVQYRESSDIIVNLEERVVHAEEDARRYKVQSDEAQ-IEVLTIREALAQLVEETKAAGL 429
Cdd:COG5022 1056 LLENNQLQARY--------KALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTnRNLVKPANVLQFIVAQMIKLNL 1127
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 430 KHH---LCTEKIAGLE---HQISNAQDELERLQDEKDNG-------FAKLKGAEERCLHL--------QRSNQILQSEME 488
Cdd:COG5022 1128 LQEiskFLSQLVNTLEpvfQKLSVLQLELDGLFWEANLEalpspppFAALSEKRLYQSALydeksklsSSEVNDLKNELI 1207
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 489 SMVQKIGSQSVELIEKQKELGRLWTsIQDERMRYVENKTAFRALQEQHSKSQEEIRS-MAEDRQIQIKTLKEMETRNQVL 567
Cdd:COG5022 1208 ALFSKIFSGWPRGDKLKKLISEGWV-PTEYSTSLKGFNNLNKKFDTPASMSNEKLLSlLNSIDNLLSSYKLEEEVLPATI 1286
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 568 EDEVQKI-------------EEERRSLKDLNLSSEVSIN-CLRDEMSNMTTNLEKL-EANLEFQLNQKNALE-KEILCLK 631
Cdd:COG5022 1287 NSLLQYInvglfnalrtkasSLRWKSATEVNYNSEELDDwCREFEISDVDEELEELiQAVKVLQLLKDDLNKlDELLDAC 1366
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 632 EELSDLKRKNLIMLEQiqfggfaPENFGSsvkELRDENSKMIETIEVEKREKSALLEKLKdMEEHSEKNTLLENaiSNLH 711
Cdd:COG5022 1367 YSLNPAEIQNLKSRYD-------PADKEN---NLPKEILKKIEALLIKQELQLSLEGKDE-TEVHLSEIFSEEK--SLIS 1433
|
570 580
....*....|....*....|....
gi 778668981 712 IELESEQtKVKVLEECCQLLSEEK 735
Cdd:COG5022 1434 LDRNSIY-KEEVLSSLSALLTKEK 1456
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
482-744 |
8.57e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 8.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 482 ILQSEMESMVQKI-GSQSVELIEKQKELG----RLWTSIQDERMRYV--------ENKTAFRALQEQHSKSQEEIRSMAE 548
Cdd:PRK05771 13 TLKSYKDEVLEALhELGVVHIEDLKEELSnerlRKLRSLLTKLSEALdklrsylpKLNPLREEKKKVSVKSLEELIKDVE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 549 DRQIQI-KTLKEMETRNQVLEDEVQKIEEERRSLKDL-NLSSEVSinclrDEMSNMTTNLEKLEANLEFQLNQKNALEKE 626
Cdd:PRK05771 93 EELEKIeKEIKELEEEISELENEIKELEQEIERLEPWgNFDLDLS-----LLLGFKYVSVFVGTVPEDKLEELKLESDVE 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 627 ILclkEELSDLKRKNLIML-----------EQIQFGGFAPENF--GSSVKELRDENSKMIETIEvekREKSALLEKLKDM 693
Cdd:PRK05771 168 NV---EYISTDKGYVYVVVvvlkelsdeveEELKKLGFERLELeeEGTPSELIREIKEELEEIE---KERESLLEELKEL 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 778668981 694 EEHsekntlLENAISNLHIELESEQTKVKVLEEccqllseeksTLVTEKAF 744
Cdd:PRK05771 242 AKK------YLEELLALYEYLEIELERAEALSK----------FLKTDKTF 276
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
269-461 |
8.78e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 8.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 269 QRLSKLESEVSRTQEDSRGLNeragkAETEVLILKESLAKLETERETSLLRYQQCLDKLSTLQDSIlcvqKNVENTERAS 348
Cdd:COG3206 189 KELEEAEAALEEFRQKNGLVD-----LSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQL----GSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 349 KAETEVERLKWEISRVESQREAALVQYRESSDIIVNLEERVVHAEE---DARRYKVQSDEAQIEVLTIREA-LAQLVEET 424
Cdd:COG3206 260 LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAqlqQEAQRILASLEAELEALQAREAsLQAQLAQL 339
|
170 180 190
....*....|....*....|....*....|....*..
gi 778668981 425 KAAGLkhhlctekiaglehQISNAQDELERLQDEKDN 461
Cdd:COG3206 340 EARLA--------------ELPELEAELRRLEREVEV 362
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
277-718 |
1.85e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 277 EVSRTQEDSRGLNERAGKAETEVLILKESLAKLETERETSLLRYQQCLDKLSTLQDSilcvqKNVENTERASKAEtever 356
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA-----EEAKKADEAKKAE----- 1543
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 357 lkwEISRVESQREAALVQYRESsdiiVNLEERVVHAEEDARRYKVQSDEA-QIEVLTIREALAQLVEETKAAGLKHHLCT 435
Cdd:PTZ00121 1544 ---EKKKADELKKAEELKKAEE----KKKAEEAKKAEEDKNMALRKAEEAkKAEEARIEEVMKLYEEEKKMKAEEAKKAE 1616
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 436 EKIAGLEhQISNAQDELERLQDEKDNGFAKLKGAEErcLHLQRSNQILQSEMESMVQKIGSQSVELIEKQKELGRLWTSI 515
Cdd:PTZ00121 1617 EAKIKAE-ELKKAEEEKKKVEQLKKKEAEEKKKAEE--LKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 516 QDERMRYVENKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEVSINCL 595
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 596 RDEMsnmttnleklEANLEFQLNQKNalEKEILCLKEELSDLKRKNLIMLEQIQFG----GFAPENFGSSVKELRD-ENS 670
Cdd:PTZ00121 1774 RKEK----------EAVIEEELDEED--EKRRMEVDKKIKDIFDNFANIIEGGKEGnlviNDSKEMEDSAIKEVADsKNM 1841
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 778668981 671 KMIETIEVEKREKSALLEKLKDMEEHSEKNT---LLENAISNLHIELESEQ 718
Cdd:PTZ00121 1842 QLEEADAFEKHKFNKNNENGEDGNKEADFNKekdLKEDDEEEIEEADEIEK 1892
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
547-762 |
1.87e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 547 AEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEVSINCLRDEMSNMTTNLEKLEANLEFQLNQKNALEKE 626
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 627 ILCLKEELSDLKRKNLIMLEQIQFG-GFAPENFGSSVKE---LRDENSKMIETIEVEKREKSALLEKLKDMEEHSEKNTL 702
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLAlLLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 703 LENAISNLHIELESEQTKVKvleeccQLLSEEKSTLVTEKAFLsSQLQMATENLEGQSEK 762
Cdd:COG4942 179 LLAELEEERAALEALKAERQ------KLLARLEKELAELAAEL-AELQQEAEELEALIAR 231
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
279-585 |
2.13e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 279 SRTQEDSRGLNERAGKAETEVLILKESLAKLE-------------TERETSL-LRYQQCLDKLStlqdsilCVQKNVENT 344
Cdd:PRK04863 275 MRHANERRVHLEEALELRRELYTSRRQLAAEQyrlvemarelaelNEAESDLeQDYQAASDHLN-------LVQTALRQQ 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 345 ERASKAETEVERLKweiSRVESQREAAlvqyRESSDIIVNLEERVVHAEEDARRYKVQ-------SDEAQIEVLTIREAL 417
Cdd:PRK04863 348 EKIERYQADLEELE---ERLEEQNEVV----EEADEQQEENEARAEAAEEEVDELKSQladyqqaLDVQQTRAIQYQQAV 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 418 aQLVEETKAaglkhhLCTekIAGLEhqISNAQDELERLQdekdngfAKLKGAEERCLHLQ---RSNQILQSEME---SMV 491
Cdd:PRK04863 421 -QALERAKQ------LCG--LPDLT--ADNAEDWLEEFQ-------AKEQEATEELLSLEqklSVAQAAHSQFEqayQLV 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 492 QKIG---------SQSVELIEKQKELGRLWTSIQDERM-------RYVENKTAFRALQEQHSKSQEEIRSMAEDRQIQIK 555
Cdd:PRK04863 483 RKIAgevsrseawDVARELLRRLREQRHLAEQLQQLRMrlseleqRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEE 562
|
330 340 350
....*....|....*....|....*....|
gi 778668981 556 TLKEMETRNQVLEDEVQKIEEERRSLKDLN 585
Cdd:PRK04863 563 LEARLESLSESVSEARERRMALRQQLEQLQ 592
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
387-807 |
2.55e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.50 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 387 ERVVHAEEDAR------RYKVQSDEAQIEVLTIREalaqLVEETKAAGLKHHLCTEKIAGLEHQISnaqdELERLQDEKD 460
Cdd:pfam10174 44 ERALRKEEAARisvlkeQYRVTQEENQHLQLTIQA----LQDELRAQRDLNQLLQQDFTTSPVDGE----DKFSTPELTE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 461 NGFAKLKGAEERclhLQRSNQILQSEMESMVQKIGSQSVELIEKQKELGRLWTSIQ------------DERMRYV----- 523
Cdd:pfam10174 116 ENFRRLQSEHER---QAKELFLLRKTLEEMELRIETQKQTLGARDESIKKLLEMLQskglpkksgeedWERTRRIaeaem 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 524 --------------ENKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLK--EMETRNQVLEDEVQKI--------EEERR 579
Cdd:pfam10174 193 qlghlevlldqkekENIHLREELHRRNQLQPDPAKTKALQTVIEMKDTKisSLERNIRDLEDEVQMLktngllhtEDREE 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 580 SLKDLNLSSEVS------INCLRDEMSNMTTNLEKLEANLEFQLNQKNALEKEILCLKEELSDLKRKNLIMLEQIQfggf 653
Cdd:pfam10174 273 EIKQMEVYKSHSkfmknkIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVD---- 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 654 APENFGSSVKELRDENSKMIETIEVEKREKSALLEKLKDMEEHSE-KNTLLENAISNLHIELESEQTKVKVLEECCQLLS 732
Cdd:pfam10174 349 ALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKErKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQ 428
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 778668981 733 EEKSTLVTEKAFLSSQLqmatenlegqSEKNTLLESSLSDANLERKQLAENVEKLHCLNNDLEEKVRLLEGNLED 807
Cdd:pfam10174 429 TDSSNTDTALTTLEEAL----------SEKERIIERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTE 493
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
468-808 |
3.01e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 468 GAEERCLHLQRSNQILQSEMEsmVQKIGSQSVELIEKQKELGRLW-TSIQDERMrYVENKTAFRALQEQHSKSQEEIRSM 546
Cdd:COG5022 856 KAKKRFSLLKKETIYLQSAQR--VELAERQLQELKIDVKSISSLKlVNLELESE-IIELKKSLSSDLIENLEFKTELIAR 932
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 547 AED--RQIQIKTLKEMEtrnQVLEDEVQKIEEERRSLKDLNLSSEVSIN---CLRDEMSNMTTNLEKLEANLEFQLNQKN 621
Cdd:COG5022 933 LKKllNNIDLEEGPSIE---YVKLPELNKLHEVESKLKETSEEYEDLLKkstILVREGNKANSELKNFKKELAELSKQYG 1009
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 622 ALEKEilclKEELSDLKRKNLIMLEQIQFGGFAPENFGSSVKELRDENSKMIETIEVEKREKSALLEK-----LKDMEEH 696
Cdd:COG5022 1010 ALQES----TKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRensllDDKQLYQ 1085
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 697 SEKNTLLENAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQSEKNTLLESSLSD-ANL 775
Cdd:COG5022 1086 LESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWeANL 1165
|
330 340 350
....*....|....*....|....*....|....*..
gi 778668981 776 ER----KQLAENVEKLHCLNNDLEEKVRLLEGNLEDV 808
Cdd:COG5022 1166 EAlpspPPFAALSEKRLYQSALYDEKSKLSSSEVNDL 1202
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
214-388 |
3.22e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 214 EKKIESNGSHDLKHQVYVESERVDKAETEIISLKNSLSKLEAEKEVGLVQYNNSLQRLSKLESEVSRTQEDSRGLNERAG 293
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 294 KAETEVLILKESLAKLETERETSLlryqqclDKLSTLQDSILCVQKNVENTERASKAETEVERLKWEISRVESQREAALV 373
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALE-------EELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQ 979
|
170
....*....|....*
gi 778668981 374 QYRESSDIIVNLEER 388
Cdd:TIGR02169 980 EYEEVLKRLDELKEK 994
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
233-639 |
3.39e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 233 SERVDKAETEIISLKNSLSKLEAEKEvglvQYNNSLQRLSKLESEVSRTQEDSRGLNE-----------RAGKAETEVLI 301
Cdd:PRK03918 313 EKRLSRLEEEINGIEERIKELEEKEE----RLEELKKKLKELEKRLEELEERHELYEEakakkeelerlKKRLTGLTPEK 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 302 LKESLAKLETERETSLLRYQQCLDKLSTLQDSILCVQKNVENTErasKAETEVERLKWEISrvESQREAALVQYRESSDI 381
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK---KAKGKCPVCGRELT--EEHRKELLEEYTAELKR 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 382 IVNLEERVVHAEEDARRYKVQSD---EAQIEVLTIREALAQL-----------VEETKAAGLKHHLCTEKIAGLEHQISN 447
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELEkvlKKESELIKLKELAEQLkeleeklkkynLEELEKKAEEYEKLKEKLIKLKGEIKS 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 448 AQDELERLQD---EKDNGFAKLKGAEERclhlqrsnqilQSEMESMVQKIGSQSVEliEKQKELGRLwTSIQDERMRYVE 524
Cdd:PRK03918 544 LKKELEKLEElkkKLAELEKKLDELEEE-----------LAELLKELEELGFESVE--ELEERLKEL-EPFYNEYLELKD 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 525 NKTAFRALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEVSinCLRDEMSNMTT 604
Cdd:PRK03918 610 AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELA--GLRAELEELEK 687
|
410 420 430
....*....|....*....|....*....|....*
gi 778668981 605 NLEKLEANLEFQLNQKNALEKEilclKEELSDLKR 639
Cdd:PRK03918 688 RREEIKKTLEKLKEELEEREKA----KKELEKLEK 718
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
541-961 |
3.72e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 541 EEIRSMAEDRQIQIK-TLKEMETRNQVLEDEVQKIEEERrslkdlnlssEVSINCLRDEMSNMTTNLEKLEANLEFQLNQ 619
Cdd:pfam05483 200 EELRVQAENARLEMHfKLKEDHEKIQHLEEEYKKEINDK----------EKQVSLLLIQITEKENKMKDLTFLLEESRDK 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 620 KNALEKEILCLKEELSDLKRKNLIMLEQIQFGGFAPENFGSSVKELRDENSKMIETIEVEKREKSALLEKL-KDMEEHSE 698
Cdd:pfam05483 270 ANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELnKAKAAHSF 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 699 KNTLLENAISNLHIELESEQTKVKVLEECCQLLSEE---KSTLVTEKAFLSSQLQMATENLEG-QSEKNTLLEsslsdan 774
Cdd:pfam05483 350 VVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMElqkKSSELEEMTKFKNNKEVELEELKKiLAEDEKLLD------- 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 775 lERKQlaenVEKLhclnndleekvrllegnLEDVQLKNLHLRKSLERSEQELLEAEQILIMMQNEKSELHKRVKELSIVC 854
Cdd:pfam05483 423 -EKKQ----FEKI-----------------AEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 855 EEAKAIVEEKESVIVKLSGDSKHLVR-------EIASQRE--RNCTLEEE-----LGKVQEDIKQHKHREKSLRCELVKK 920
Cdd:pfam05483 481 EKEKLKNIELTAHCDKLLLENKELTQeasdmtlELKKHQEdiINCKKQEErmlkqIENLEEKEMNLRDELESVREEFIQK 560
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 778668981 921 RMEVEiCETQADElfgELQISNVHEIVFKEKLLELDEAYVN 961
Cdd:pfam05483 561 GDEVK-CKLDKSE---ENARSIEYEVLKKEKQMKILENKCN 597
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
435-583 |
4.76e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 435 TEKIAGLEHQISNAQDELERLQDEKDNGFAKLKGAEERCLHLQRsnqilqsemesmVQKIGSQSVELIEKQKELGRLwts 514
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR------------LAEYSWDEIDVASAEREIAEL--- 673
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 778668981 515 iQDERMRYVENKTAFRALQEQHSKSQEEIRSMAEDRqiqiktlKEMETRNQVLEDEVQKIEEERRSLKD 583
Cdd:COG4913 674 -EAELERLDASSDDLAALEEQLEELEAELEELEEEL-------DELKGEIGRLEKELEQAEEELDELQD 734
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
442-768 |
5.10e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.43 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 442 EHQISNAQ--DELERLQDEKDNgfaKLKGAEERCLHLQRSNQILqSEMESMVQKIGSQSVELIEkqkelgrlwtsiQDER 519
Cdd:PLN02939 122 GEQLSDFQleDLVGMIQNAEKN---ILLLNQARLQALEDLEKIL-TEKEALQGKINILEMRLSE------------TDAR 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 520 MryvenKTAfralqeqhskSQEEIRSMAEDRQIQiKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEVSINCLRDEM 599
Cdd:PLN02939 186 I-----KLA----------AQEKIHVEILEEQLE-KLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAEL 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 600 SNMTTNLEKLEAnlefqlnqknaLEKEILCLKEELSDLKRKNLIMLEQI-QFGGFAPENFGSSVKELRDenskMIETIEV 678
Cdd:PLN02939 250 IEVAETEERVFK-----------LEKERSLLDASLRELESKFIVAQEDVsKLSPLQYDCWWEKVENLQD----LLDRATN 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 679 EKREKSALLEKLKDMEEHSEK--NTLLENAISNLHIE-LESEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLQMATEN 755
Cdd:PLN02939 315 QVEKAALVLDQNQDLRDKVDKleASLKEANVSKFSSYkVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSK 394
|
330
....*....|...
gi 778668981 756 LEGQSEKNTLLES 768
Cdd:PLN02939 395 LKEESKKRSLEHP 407
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
386-874 |
5.12e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 386 EERVVHAEEDARRYKVQSDEAQIEVLTIREALAQLVEETKAAGLKHHLCTEKIAGLEH---QISNAQDELERLQDEKDng 462
Cdd:pfam01576 4 EEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEmraRLAARKQELEEILHELE-- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 463 fAKLKGAEERclhlqrsNQILQSEMESMVQKIGSQSVELIEKQKELGRLwtsiQDERMryvenktafrALQEQHSKSQEE 542
Cdd:pfam01576 82 -SRLEEEEER-------SQQLQNEKKKMQQHIQDLEEQLDEEEAARQKL----QLEKV----------TTEAKIKKLEED 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 543 IRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSLKDLNLSSEVSINCLRDEMSNMTTNLEKLEANLEFQLNQKNA 622
Cdd:pfam01576 140 ILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTD 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 623 LEKEILCLKEELSDLKRKNLIMLEQIQFG-------GFAPENFGSSVKELRDENSKMIETIEVEKREKSALLEKLKDMEE 695
Cdd:pfam01576 220 LQEQIAELQAQIAELRAQLAKKEEELQAAlarleeeTAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGE 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 696 HSEK-NTLLENAISNLHIELESEQTKVKVLEECCQLLSEEKSTLVTEKAFLSSQLQMATENLEGQSEkntllESSLSDAN 774
Cdd:pfam01576 300 ELEAlKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLE-----QAKRNKAN 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 775 LERKQLAENVEklhclNNDLEEKVRLLEGNLEDVQlknlHLRKSLERSEQELL----EAEQilimmqnEKSELHKRVKEL 850
Cdd:pfam01576 375 LEKAKQALESE-----NAELQAELRTLQQAKQDSE----HKRKKLEGQLQELQarlsESER-------QRAELAEKLSKL 438
|
490 500
....*....|....*....|....
gi 778668981 851 SIVCEEAKAIVEEKESVIVKLSGD 874
Cdd:pfam01576 439 QSELESVSSLLNEAEGKNIKLSKD 462
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
385-846 |
7.66e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 7.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 385 LEERVVHAEEDARRY-----KVQSDEAQIEVLTIREALAQLVEETKAAGLKHHLCTEKIAGLEHQISNAQDELERLQDEk 459
Cdd:COG4717 76 LEEELKEAEEKEEEYaelqeELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEER- 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 460 dngFAKLKGAEERCLHLQRSNQILQSEMESMVQKIGsqsvelIEKQKELGRLWTSIQDERMRYVENKTAFRALQEQHSKS 539
Cdd:COG4717 155 ---LEELRELEEELEELEAELAELQEELEELLEQLS------LATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 540 QEEIRSMAEDrqiqiktlkemetrnQVLEDEVQKIEEERRSLKDLNLSSEVSINCLRDEMSNMT------TNLEKLEANL 613
Cdd:COG4717 226 EEELEQLENE---------------LEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlfLVLGLLALLF 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 614 EFQLNQKNALEKEILCLKEELSDLKRKNLIMLEQIQFGGFAPENFGSSVKELRDEnskmIETIEVEKREKSALLEKLKDM 693
Cdd:COG4717 291 LLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDR----IEELQELLREAEELEEELQLE 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 694 EEHSEKNTLLENAisnlhiELESEQTKVKVLEEccqllSEEKSTLVTEKAFLSSQLQMATENLEGQSEKNTL--LESSLS 771
Cdd:COG4717 367 ELEQEIAALLAEA------GVEDEEELRAALEQ-----AEEYQELKEELEELEEQLEELLGELEELLEALDEeeLEEELE 435
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 778668981 772 DANLERKQLAENVEKLHCLNNDLEEKVRLLE--GNLEDVQLKNLHLRKSLERSEQELLEAEQILIMMQNEKSELHKR 846
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEedGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
774-1030 |
7.77e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.81 E-value: 7.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 774 NLERKqlAENVEKLHCLNNDLEEKVRLLEGNLEDVQLKNLH-LRKSLERSEQELLEAeqilimmQNEKSELHKRVKELSI 852
Cdd:TIGR02168 204 SLERQ--AEKAERYKELKAELRELELALLVLRLEELREELEeLQEELKEAEEELEEL-------TAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 853 VCEEAKAIVEEKESVIVKLSGDSKHLVREIASQRERNCTLEEELGKVQEDIKQHKHREKSLRCELVKKRMEVEICETQAD 932
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 933 ELFGELQISNVHEIVFKEKLLELDEAYVNLETRSNYRDVKTDTTRERINNITDLNGELGVHLAKYTSAVTSLNDSVSYLE 1012
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
250
....*....|....*...
gi 778668981 1013 NHTLLGRKTHKYEKQEDT 1030
Cdd:TIGR02168 435 LKELQAELEELEEELEEL 452
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
269-495 |
8.82e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 8.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 269 QRLSKLESEVSRTQEDSRGLNERAGKAETEVLILKESLAKLETERETSLL-RYQQCLDKLSTLQDSILCVQKNvenTERA 347
Cdd:COG3096 843 QRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNKLLPQANLLADETLAdRLEELREELDAAQEAQAFIQQH---GKAL 919
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 348 SKAETEV----------ERLKWEISRVESQREAA---------LVQYR-------------ESSDIIVNLEERVVHAEED 395
Cdd:COG3096 920 AQLEPLVavlqsdpeqfEQLQADYLQAKEQQRRLkqqifalseVVQRRphfsyedavgllgENSDLNEKLRARLEQAEEA 999
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 396 ARRYKVQSDEAQIEVLTIREALAQLVEETKAAGLKHHLCTEKIAGLEhqISNAQDELERLQDEKDNGFAKLKGAEERCLH 475
Cdd:COG3096 1000 RREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEELG--VQADAEAEERARIRRDELHEELSQNRSRRSQ 1077
|
250 260
....*....|....*....|
gi 778668981 476 LQRSNQILQSEMESMVQKIG 495
Cdd:COG3096 1078 LEKQLTRCEAEMDSLQKRLR 1097
|
|
| Leu_zip |
pfam15294 |
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 ... |
677-849 |
9.23e-03 |
|
Leucine zipper; This family includes Leucine zipper transcription factor-like protein 1 (LZTFL1) and Leucine zipper protein 2 (LUZP2).
Pssm-ID: 464620 [Multi-domain] Cd Length: 276 Bit Score: 39.69 E-value: 9.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 677 EVEKREksaLLEKLKDMEEHsekntllENAISNLHIELESEQTKVKVLEEC--CQLLSEEKSTLVTEKAFLSSQLQMATE 754
Cdd:pfam15294 85 ELENRE---LLEQIAEFEER-------EFTSSNKKPNFELNKPKLEPLNEGggSALLHMEIERLKEENEKLKERLKTLES 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 755 NLEGQSEKNTLLESSLSDANLERKQLAENVEKLHCLnNDLEEKVRLLEGNLEDVQLKNLHLRKSLE----RSEQELLEAE 830
Cdd:pfam15294 155 QATQALDEKSKLEKALKDLQKEQGAKKDVKSNLKEI-SDLEEKMAALKSDLEKTLNASTALQKSLEedlaSTKHELLKVQ 233
|
170
....*....|....*....
gi 778668981 831 QILIMMQnekSELHKRVKE 849
Cdd:pfam15294 234 EQLEMAE---KELEKKFQQ 249
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
451-627 |
9.63e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 9.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 451 ELERLQDEKDNGFAKLKGAEERCLHLQRSNQILQSEMESmvqkigSQSVELIEKQKELGRLWTSIQDERMRYVENKTAF- 529
Cdd:pfam17380 349 ELERIRQEERKRELERIRQEEIAMEISRMRELERLQMER------QQKNERVRQELEAARKVKILEEERQRKIQQQKVEm 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 778668981 530 -RALQEQHSKSQEEIRSMAEDRQIQIKTLKEMETRNQVLEDEVQKIEEERRSlKDLNLSSEVSINCLRDEMSNMTTNLEk 608
Cdd:pfam17380 423 eQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKR-KKLELEKEKRDRKRAEEQRRKILEKE- 500
|
170 180
....*....|....*....|..
gi 778668981 609 LEANLEFQLNQKNA---LEKEI 627
Cdd:pfam17380 501 LEERKQAMIEEERKrklLEKEM 522
|
|
| |
