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Conserved domains on  [gi|2217264596|ref|XP_011507557|]
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tetratricopeptide repeat protein 24 isoform X4 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
121-408 2.83e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.81  E-value: 2.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 121 FNVALAYHALGELPQALAWYHRALGHYQpqgDQGEAWAKMGACYQALGQPELAAHCLQEAsqayaqerqlraaalalgaa 200
Cdd:COG0457    12 NNLGLAYRRLGRYEEAIEDYEKALELDP---DDAEALYNLGLAYLRLGRYEEALADYEQA-------------------- 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 201 agcmlksgrhrvgevvqvLEKSRRLAErsterrllghLYNDLGLGYSQLQLFPLAVEAFLQALPLcwvPGEQATVLRNLG 280
Cdd:COG0457    69 ------------------LELDPDDAE----------ALNNLGLALQALGRYEEALEDYDKALEL---DPDDAEALYNLG 117

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 281 MAHNALGNYQEAREFHQKAADLHGSVGQRWEqgrsfgSLAFALSQLGDHKAARDNYLHALQAARDsgDMKGQWQACEGLG 360
Cdd:COG0457   118 LALLELGRYDEAIEAYERALELDPDDADALY------NLGIALEKLGRYEEALELLEKLEAAALA--ALLAAALGEAALA 189

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 2217264596 361 AAAARLGQYDQALKYYKEALAQCQKEPDSVRERLVAKLADTVRTRLAQ 408
Cdd:COG0457   190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 29-182 1.33e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 1.33e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  29 WLRQEASIQALTRAGHGALQAGQNHEALNNFQRAFLLASKAPQTRdtpvlqacaFNLGAAYVETGDPARGLELLLRAHpe 108
Cdd:COG3914    71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEAL---------FNLGNLLLALGRLEEALAALRRAL-- 139

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217264596 109 ekAQGRRHGDQCFNVALAYHALGELPQALAWYHRALghyQPQGDQGEAWAKMGACYQALGQPELAAHCLQEASQ 182
Cdd:COG3914   140 --ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRAL---ELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
121-408 2.83e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.81  E-value: 2.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 121 FNVALAYHALGELPQALAWYHRALGHYQpqgDQGEAWAKMGACYQALGQPELAAHCLQEAsqayaqerqlraaalalgaa 200
Cdd:COG0457    12 NNLGLAYRRLGRYEEAIEDYEKALELDP---DDAEALYNLGLAYLRLGRYEEALADYEQA-------------------- 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 201 agcmlksgrhrvgevvqvLEKSRRLAErsterrllghLYNDLGLGYSQLQLFPLAVEAFLQALPLcwvPGEQATVLRNLG 280
Cdd:COG0457    69 ------------------LELDPDDAE----------ALNNLGLALQALGRYEEALEDYDKALEL---DPDDAEALYNLG 117

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 281 MAHNALGNYQEAREFHQKAADLHGSVGQRWEqgrsfgSLAFALSQLGDHKAARDNYLHALQAARDsgDMKGQWQACEGLG 360
Cdd:COG0457   118 LALLELGRYDEAIEAYERALELDPDDADALY------NLGIALEKLGRYEEALELLEKLEAAALA--ALLAAALGEAALA 189

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 2217264596 361 AAAARLGQYDQALKYYKEALAQCQKEPDSVRERLVAKLADTVRTRLAQ 408
Cdd:COG0457   190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 29-182 1.33e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 1.33e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  29 WLRQEASIQALTRAGHGALQAGQNHEALNNFQRAFLLASKAPQTRdtpvlqacaFNLGAAYVETGDPARGLELLLRAHpe 108
Cdd:COG3914    71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEAL---------FNLGNLLLALGRLEEALAALRRAL-- 139

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217264596 109 ekAQGRRHGDQCFNVALAYHALGELPQALAWYHRALghyQPQGDQGEAWAKMGACYQALGQPELAAHCLQEASQ 182
Cdd:COG3914   140 --ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRAL---ELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
TPR_12 pfam13424
Tetratricopeptide repeat;
271-345 2.37e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 54.32  E-value: 2.37e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217264596 271 EQATVLRNLGMAHNALGNYQEAREFHQKAADLHGSV--GQRWEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARD 345
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 353-381 1.00e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 1.00e-03
                           10        20
                   ....*....|....*....|....*....
gi 2217264596  353 WQACEGLGAAAARLGQYDQALKYYKEALA 381
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALE 29
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 54-136 2.75e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  54 EALNNFQRAFLLASKAPQTRDTpvlqacafnLGAAYVETGDPARGLELLLRAhpeeKAQGRRHGDQCFNVALAYHALGEL 133
Cdd:TIGR02917 821 RALEYAERALKLAPNIPAILDT---------LGWLLVEKGEADRALPLLRKA----VNIAPEAAAIRYHLALALLATGRK 887


                  ...
gi 2217264596 134 PQA 136
Cdd:TIGR02917 888 AEA 890
TPR_12 pfam13424
Tetratricopeptide repeat;
84-144 7.13e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.83  E-value: 7.13e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217264596  84 NLGAAYVETGDPARGLELLLRAHPE-EKAQGRRHGDQC---FNVALAYHALGELPQALAWYHRAL 144
Cdd:pfam13424   8 NLAAVLRRLGRYDEALELLEKALEIaRRLLGPDHPLTAttlLNLGRLYLELGRYEEALELLERAL 72
 
Name Accession Description Interval E-value
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
121-408 2.83e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 75.81  E-value: 2.83e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 121 FNVALAYHALGELPQALAWYHRALGHYQpqgDQGEAWAKMGACYQALGQPELAAHCLQEAsqayaqerqlraaalalgaa 200
Cdd:COG0457    12 NNLGLAYRRLGRYEEAIEDYEKALELDP---DDAEALYNLGLAYLRLGRYEEALADYEQA-------------------- 68

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 201 agcmlksgrhrvgevvqvLEKSRRLAErsterrllghLYNDLGLGYSQLQLFPLAVEAFLQALPLcwvPGEQATVLRNLG 280
Cdd:COG0457    69 ------------------LELDPDDAE----------ALNNLGLALQALGRYEEALEDYDKALEL---DPDDAEALYNLG 117

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 281 MAHNALGNYQEAREFHQKAADLHGSVGQRWEqgrsfgSLAFALSQLGDHKAARDNYLHALQAARDsgDMKGQWQACEGLG 360
Cdd:COG0457   118 LALLELGRYDEAIEAYERALELDPDDADALY------NLGIALEKLGRYEEALELLEKLEAAALA--ALLAAALGEAALA 189

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 2217264596 361 AAAARLGQYDQALKYYKEALAQCQKEPDSVRERLVAKLADTVRTRLAQ 408
Cdd:COG0457   190 LAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 157-394 9.24e-14

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.07  E-value: 9.24e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 157 WAKMGACYQALGQPELAAHCLQEASQAYAQERQLRAaalalgaaagcMLKSGRHRVGEVVQVLEKSRRLAERSTERrllG 236
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHL-----------ALGNLYRRRGEYDRAIRIHQKLLERDPDR---A 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 237 HLYNDLGLGYSQLQLFPLAVEAFLQALPLcwvPGEQATVLRNLGMAHNALGNYQEAREFHQKAADLHGSVGQRWEQgrsf 316
Cdd:COG2956    77 EALLELAQDYLKAGLLDRAEELLEKLLEL---DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE---- 149

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217264596 317 gsLAFALSQLGDHKAARDNYLHALQAARDSGDmkgqwqACEGLGAAAARLGQYDQALKYYKEALAQcQKEPDSVRERL 394
Cdd:COG2956   150 --LAELYLEQGDYDEAIEALEKALKLDPDCAR------ALLLLAELYLEQGDYEEAIAALERALEQ-DPDYLPALPRL 218
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 42-382 1.20e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 71.68  E-value: 1.20e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  42 AGHGALQAGQNHEALNNFQRAFLLASKA----PQTRDTpvlqacAFNLGAAYVETGDPARGLELLLRAHpeekAQGRRHG 117
Cdd:COG2956     7 AALGWYFKGLNYLLNGQPDKAIDLLEEAleldPETVEA------HLALGNLYRRRGEYDRAIRIHQKLL----ERDPDRA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 118 DQCFNVALAYHALGELPQALAWYHRALghyQPQGDQGEAWAKMGACYQALGQPELAAHCLQEASQAYAQErqlraaalal 197
Cdd:COG2956    77 EALLELAQDYLKAGLLDRAEELLEKLL---ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN---------- 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 198 gaaagcmlksgrhrvgevvqvleksrrlaersterrllGHLYNDLGLGYSQLQLFPLAVEAFLQAL---PLCwvpgeqAT 274
Cdd:COG2956   144 --------------------------------------AHAYCELAELYLEQGDYDEAIEALEKALkldPDC------AR 179

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 275 VLRNLGMAHNALGNYQEAREFHQKAADLHGsvgqrwEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARDSGDMkgqwq 354
Cdd:COG2956   180 ALLLLAELYLEQGDYEEAIAALERALEQDP------DYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL----- 248

                         330       340
                  ....*....|....*....|....*...
gi 2217264596 355 acEGLGAAAARLGQYDQALKYYKEALAQ 382
Cdd:COG2956   249 --LALADLLERKEGLEAALALLERQLRR 274
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
152-411 8.49e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.49  E-value: 8.49e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 152 DQGEAWAKMGACYQALGQPELAAHCLQEAsqayaqerqlraaalalgaaagcmlksgrhrvgevvqvLEKSRRLAErste 231
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKA--------------------------------------LELDPDDAE---- 43

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 232 rrllghLYNDLGLGYSQLQLFPLAVEAFLQALPLCwvpGEQATVLRNLGMAHNALGNYQEAREFHQKAADLHGsvgqrwE 311
Cdd:COG0457    44 ------ALYNLGLAYLRLGRYEEALADYEQALELD---PDDAEALNNLGLALQALGRYEEALEDYDKALELDP------D 108

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 312 QGRSFGSLAFALSQLGDHKAARDNYLHALQAARDSGDmkgqwqACEGLGAAAARLGQYDqalkyykEALAQCQKEPDSVR 391
Cdd:COG0457   109 DAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD------ALYNLGIALEKLGRYE-------EALELLEKLEAAAL 175

                         250       260
                  ....*....|....*....|
gi 2217264596 392 ERLVAKLADTVRTRLAQVGL 411
Cdd:COG0457   176 AALLAAALGEAALALAAAEV 195
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
83-373 8.81e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.49  E-value: 8.81e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  83 FNLGAAYVETGDPARGLELLLRAHpeekAQGRRHGDQCFNVALAYHALGELPQALAWYHRALgHYQPqgDQGEAWAKMGA 162
Cdd:COG0457    12 NNLGLAYRRLGRYEEAIEDYEKAL----ELDPDDAEALYNLGLAYLRLGRYEEALADYEQAL-ELDP--DDAEALNNLGL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 163 CYQALGQPELAAHCLQEAsqayaqerqlraaalalgaaagcmlksgrhrvgevvqvLEKSRRLAErsterrllghLYNDL 242
Cdd:COG0457    85 ALQALGRYEEALEDYDKA--------------------------------------LELDPDDAE----------ALYNL 116

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 243 GLGYSQLQLFPLAVEAFLQALPLCWvpgEQATVLRNLGMAHNALGNYQEAREFHQKAADLHGSVGQRWEQGRSFGSLAFA 322
Cdd:COG0457   117 GLALLELGRYDEAIEAYERALELDP---DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAA 193

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2217264596 323 LSQLGDHKAARDNYLHALQAARDSGDMKGQWQACEGLGAAAARLGQYDQAL 373
Cdd:COG0457   194 EVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 121-398 4.46e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 67.06  E-value: 4.46e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 121 FNVALAYHALGELPQALAWYHRALghyQPQGDQGEAWAKMGACYQALGQPELAAHCLQEASQAYAQERQLRAAALAlgaa 200
Cdd:COG2956    12 YFKGLNYLLNGQPDKAIDLLEEAL---ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ---- 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 201 agCMLKSGRHRvgEVVQVLEKSRRLAERSTE-RRLLGHLYNDLGLgysqlqlFPLAVEAFLQALPLCwvpGEQATVLRNL 279
Cdd:COG2956    85 --DYLKAGLLD--RAEELLEKLLELDPDDAEaLRLLAEIYEQEGD-------WEKAIEVLERLLKLG---PENAHAYCEL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 280 GMAHNALGNYQEAREFHQKAADLHgsvgqrWEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARDSGdmkgqwQACEGL 359
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKLD------PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYL------PALPRL 218

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2217264596 360 GAAAARLGQYDQALKYYKEALAQcqkEPDSVRERLVAKL 398
Cdd:COG2956   219 AELYEKLGDPEEALELLRKALEL---DPSDDLLLALADL 254
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 29-182 1.33e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 1.33e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  29 WLRQEASIQALTRAGHGALQAGQNHEALNNFQRAFLLASKAPQTRdtpvlqacaFNLGAAYVETGDPARGLELLLRAHpe 108
Cdd:COG3914    71 AAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEAL---------FNLGNLLLALGRLEEALAALRRAL-- 139

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217264596 109 ekAQGRRHGDQCFNVALAYHALGELPQALAWYHRALghyQPQGDQGEAWAKMGACYQALGQPELAAHCLQEASQ 182
Cdd:COG3914   140 --ALNPDFAEAYLNLGEALRRLGRLEEAIAALRRAL---ELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 37-328 1.44e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 1.44e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  37 QALTRAGHGALQAGQNHEALNNFQRAFLLASKAPQTRDTPVLQACAFNLGAAYvetgDPARGLELLLRAHPEEKAQGRRH 116
Cdd:COG3914     2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEA----AAAALLALAAGEAAAAAAALLLL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 117 GDQCFNVALAYHALGELPQALAWYHRALGHyqpQGDQGEAWAKMGACYQALGQPELAAHCLQEAsqayaqerqlraaala 196
Cdd:COG3914    78 AALLELAALLLQALGRYEEALALYRRALAL---NPDNAEALFNLGNLLLALGRLEEALAALRRA---------------- 138

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 197 lgaaagcmlksgrhrvgevvqvLEKSRRLAErsterrllghLYNDLGLGYSQLQLFPLAVEAFLQALPLcwVPgEQATVL 276
Cdd:COG3914   139 ----------------------LALNPDFAE----------AYLNLGEALRRLGRLEEAIAALRRALEL--DP-DNAEAL 183

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2217264596 277 RNLGMAHNALGNYQEAREFHQKAADLHGsvgqrwEQGRSFGSLAFALSQLGD 328
Cdd:COG3914   184 NNLGNALQDLGRLEEAIAAYRRALELDP------DNADAHSNLLFALRQACD 229
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 155-381 1.60e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 1.60e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 155 EAWAKMGACYQALGQPELAAHCLQEASQAYAQERQLRAAALALGAaagcmLKSGRHRVGEVVQVLEKSRRLAERSTERRL 234
Cdd:COG3914     2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALL-----LLAALAEAAAAALLALAAGEAAAAAAALLL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 235 LGHLYNDLGLGYSQLQLFPLAVEAFLQALPLCwvpGEQATVLRNLGMAHNALGNYQEAREFHQKAADLHGsvgqrwEQGR 314
Cdd:COG3914    77 LAALLELAALLLQALGRYEEALALYRRALALN---PDNAEALFNLGNLLLALGRLEEALAALRRALALNP------DFAE 147

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217264596 315 SFGSLAFALSQLGDHKAARDNYLHALQAARDsgdmkgQWQACEGLGAAAARLGQYDQALKYYKEALA 381
Cdd:COG3914   148 AYLNLGEALRRLGRLEEAIAALRRALELDPD------NAEALNNLGNALQDLGRLEEAIAAYRRALE 208
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 125-353 1.73e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.86  E-value: 1.73e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 125 LAYHALGELPQALAWYHRALGHYQPQGDQGEAWAKMGACYQALGQPELAAHCLQEASQAYAQERQLRAAALALGAAAGCM 204
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 205 LKS------GRHRVGEVVQVLEKSRRLAERSTErrllghLYNDLGLGYSQLQLFPLAVEAFLQALPLcwvPGEQATVLRN 278
Cdd:COG3914    81 LELaalllqALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALAL---NPDFAEAYLN 151

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217264596 279 LGMAHNALGNYQEAREFHQKAADLHGsvgqrwEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARDSGDMKGQW 353
Cdd:COG3914   152 LGEALRRLGRLEEAIAALRRALELDP------DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 223-382 1.42e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 61.16  E-value: 1.42e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 223 RRLAERSTERRLLGHLYNDLGLGYSQLQLFPLAVEAFLQALPLCWVPGEQATVLRNLGMAHNAL---GNYQEAREFHQKA 299
Cdd:COG3914    25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLqalGRYEEALALYRRA 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 300 ADLHGSVGQRWEQgrsfgsLAFALSQLGDHKAARDNYLHALQAARDsgdmkgQWQACEGLGAAAARLGQYDQALKYYKEA 379
Cdd:COG3914   105 LALNPDNAEALFN------LGNLLLALGRLEEALAALRRALALNPD------FAEAYLNLGEALRRLGRLEEAIAALRRA 172


                  ...
gi 2217264596 380 LAQ 382
Cdd:COG3914   173 LEL 175
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
37-180 1.53e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.86  E-value: 1.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  37 QALTRAGHGALQAGQNHEALNNFQRAFLLASKAPQTRdtpvlqacaFNLGAAYVETGDPARGLELLLRAHpeekAQGRRH 116
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEAL---------YNLGLAYLRLGRYEEALADYEQAL----ELDPDD 75

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217264596 117 GDQCFNVALAYHALGELPQALAWYHRALGHyqpQGDQGEAWAKMGACYQALGQPELAAHCLQEA 180
Cdd:COG0457    76 AEALNNLGLALQALGRYEEALEDYDKALEL---DPDDAEALYNLGLALLELGRYDEAIEAYERA 136
TPR_12 pfam13424
Tetratricopeptide repeat;
271-345 2.37e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 54.32  E-value: 2.37e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2217264596 271 EQATVLRNLGMAHNALGNYQEAREFHQKAADLHGSV--GQRWEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARD 345
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 271-400 2.41e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.78  E-value: 2.41e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 271 EQATVLRNLGMAHNALGNYQEAREFHQKAADLHGSVGQRWeqgrsfGSLAFALSQLGDHKAARDNYLHALqaARDSGDMK 350
Cdd:COG4235    15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADAL------LDLAEALLAAGDTEEAEELLERAL--ALDPDNPE 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 2217264596 351 GQWQacegLGAAAARLGQYDQALKYYKEALAqcQKEPDSVRERLVAKLAD 400
Cdd:COG4235    87 ALYL----LGLAAFQQGDYAEAIAAWQKLLA--LLPADAPARLLEASIAE 130
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
238-381 1.40e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 55.69  E-value: 1.40e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 238 LYNDLGLGYSQLQLFPLAVEAFLQALPLCwvPgEQATVLRNLGMAHNALGNYQEAREFHQKAADLhgsvgqRWEQGRSFG 317
Cdd:COG4785    75 LYYERGVAYDSLGDYDLAIADFDQALELD--P-DLAEAYNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAYAYL 145

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2217264596 318 SLAFALSQLGDHKAARDNYLHALQAARDSGDM----------KGQWQACEGL----GAAAARLGQYDQALKYYKEALA 381
Cdd:COG4785   146 NRGIALYYLGRYELAIADLEKALELDPNDPERalwlylaerkLDPEKALALLledwATAYLLQGDTEEARELFKLALA 223
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-190 1.10e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.58  E-value: 1.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  35 SIQALTRAGHGALQAGQNHEALNNFQRAFLLASKAPQTRdtpvlqacaFNLGAAYVETGDPARGLELLLRAHPEEKAQGR 114
Cdd:COG2956   109 DAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAY---------CELAELYLEQGDYDEAIEALEKALKLDPDCAR 179

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2217264596 115 RHgdqcFNVALAYHALGELPQALAWYHRALghyQPQGDQGEAWAKMGACYQALGQPELAAHCLQEASQAYAQERQL 190
Cdd:COG2956   180 AL----LLLAELYLEQGDYEEAIAALERAL---EQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 270-388 1.94e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 1.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 270 GEQATVLRNLGMAHNALGNYQEAREFHQKAADLHGsvgqrwEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARDSgdm 349
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDP------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE--- 71

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2217264596 350 kgqWQACEGLGAAAARLGQYDQALKYYKEALAQCQKEPD 388
Cdd:COG4783    72 ---PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE 107
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 222-381 5.97e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.57  E-value: 5.97e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 222 SRRLAERSTERRLLGHLYNDLGLGYSQLQLFPLAVEAFLQALPLCWVPGEQATVLRNLGMAHNALGNYQEAREFHQKAAD 301
Cdd:COG5010     3 ALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQ 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 302 LHGsvgqrwEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARDSgdmkgqWQACEGLGAAAARLGQYDQALKYYKEALA 381
Cdd:COG5010    83 LDP------NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN------PNAYSNLAALLLSLGQDDEAKAALQRALG 150
TPR_12 pfam13424
Tetratricopeptide repeat;
319-385 1.51e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.23  E-value: 1.51e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2217264596 319 LAFALSQLGDHKAARDNYLHALQAARDSGDMKGQWQAC--EGLGAAAARLGQYDQALKYYKEALAQCQK 385
Cdd:pfam13424   9 LAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATtlLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 33-187 2.65e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 2.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  33 EASIQALTRAGHGALQAGQNHEALNNFQRAFLLASKAPQTRdtpvlqacaFNLGAAYVETGDPARGLELLLRAHpeekAQ 112
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAF---------ALLGEILLQLGDLDEAIVLLHEAL----EL 67

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217264596 113 GRRHGDQCFNVALAYHALGELPQALAWYHRALGHYQpqgDQGEAWAKMGACYQALGQPELAAHCLQEASQAYAQE 187
Cdd:COG4783    68 DPDEPEARLNLGLALLKAGDYDEALALLEKALKLDP---EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
282-381 3.39e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.93  E-value: 3.39e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 282 AHNALGNYQEAREFHQKAADLHgsvgqrWEQGRSFGSLAFALSQLGDHKAARDnYLHALQAARDSgdmkgqWQACEGLGA 361
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELD------PDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNN------AEALLNLAE 67

                          90       100
                  ....*....|....*....|
gi 2217264596 362 AAARLGQYDQALKYYKEALA 381
Cdd:COG3063    68 LLLELGDYDEALAYLERALE 87
COG3899 COG3899
Predicted ATPase [General function prediction only];
36-435 7.30e-06

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 49.47  E-value: 7.30e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596   36 IQALTRAGHGALQAGQNHEALNNFQRAFLLASKAPQTRDTPVLQAcafNLGAAYVETGDPARGLELLLRAHPEEKAQG-- 113
Cdd:COG3899    705 ARLLLRAARRALARGAYAEALRYLERALELLPPDPEEEYRLALLL---ELAEALYLAGRFEEAEALLERALAARALAAla 781

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  114 -RRHGDqCFNVALAYH-----ALGELPQALAWYHRALGHYQPQGD---QGEAWAKMGACYQALGQPELAAHCLQEASQAY 184
Cdd:COG3899    782 aLRHGN-PPASARAYAnlgllLLGDYEEAYEFGELALALAERLGDrrlEARALFNLGFILHWLGPLREALELLREALEAG 860

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  185 AQERQLRAAALALGAAAGCMLKSGRHRVGEVVQVLEKSRRLAERSTERRLLGHLYNDLGLGYSQLQLFPLAVEAFLQALP 264
Cdd:COG3899    861 LETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAA 940

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  265 LCWVPGEQATVLRNLGMAHNALGNYQEAREFHQKAADLHGSVGQRWEQGRSFGSLAFALSQLGDHKAARDNYLHALQAAR 344
Cdd:COG3899    941 AAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALL 1020

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  345 DSGDMKGQWQACEGLGAAAARLGQYDQALKYYKEALAQCQKEPDSVRERLVAKLADTVRTRLAQVGLVQTHTLTSAPGRL 424
Cdd:COG3899   1021 AAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAA 1100

                          410
                   ....*....|.
gi 2217264596  425 QAPGGASQAEG 435
Cdd:COG3899   1101 AAAALALAAAL 1111
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 271-382 1.11e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.57  E-value: 1.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 271 EQATVLRNLGMAHNALGNYQEAREFHQKAADLHGsvgqrwEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARDSGDmk 350
Cdd:COG4783    36 DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP------DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE-- 107

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2217264596 351 gqwqACEGLGAAAARLGQYDQALKYYKEALAQ 382
Cdd:COG4783   108 ----AYLRLARAYRALGRPDEAIAALEKALEL 135
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 118-303 2.28e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.80  E-value: 2.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 118 DQCFNVALAYHALGELPQALAWYHRALghyQPQGDQGEAWAKMGACYQALGQPELAAHCLQEASQAYAQERQlraaalal 197
Cdd:COG4783     5 EALYALAQALLLAGDYDEAEALLEKAL---ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE-------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 198 gaaagcmlksgrhrvgevvqvleksrrlaersterrllghLYNDLGLGYSQLQLFPLAVEAFLQALPLCwvpGEQATVLR 277
Cdd:COG4783    74 ----------------------------------------ARLNLGLALLKAGDYDEALALLEKALKLD---PEHPEAYL 110

                         170       180
                  ....*....|....*....|....*.
gi 2217264596 278 NLGMAHNALGNYQEAREFHQKAADLH 303
Cdd:COG4783   111 RLARAYRALGRPDEAIAALEKALELD 136
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
246-345 2.76e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 2.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 246 YSQLQLFPLAVEAFLQALPLcwVPgEQATVLRNLGMAHNALGNYQEAREFhQKAADLHGsvgqrwEQGRSFGSLAFALSQ 325
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALEL--DP-DNADALNNLGLLLLEQGRYDEAIAL-EKALKLDP------NNAEALLNLAELLLE 71

                          90       100
                  ....*....|....*....|
gi 2217264596 326 LGDHKAARDNYLHALQAARD 345
Cdd:COG3063    72 LGDYDEALAYLERALELDPS 91
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 88-184 1.00e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.90  E-value: 1.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  88 AYVETGDP---ARGLELLLRAHPEEKAQGRRHgdqcFNVALAYHALGELPQALAWYHRALGHYqPQGDQ-GEAWAKMGAC 163
Cdd:COG1729     2 ALLKAGDYdeaIAAFKAFLKRYPNSPLAPDAL----YWLGEAYYALGDYDEAAEAFEKLLKRY-PDSPKaPDALLKLGLS 76

                          90       100
                  ....*....|....*....|.
gi 2217264596 164 YQALGQPELAAHCLQEASQAY 184
Cdd:COG1729    77 YLELGDYDKARATLEELIKKY 97
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 142-303 1.27e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.03  E-value: 1.27e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 142 RALGHYQPQGDQGEAWAKMGACYQALGQPELAAHCLQEASQAYAQERQLRAAALALGAAAGCMLKSGRHRvgEVVQVLEK 221
Cdd:COG5010     2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFE--ESLALLEQ 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 222 SRRLAERSTErrllghLYNDLGLGYSQLQLFPLAVEAFLQALPLCwvpGEQATVLRNLGMAHNALGNYQEAREFHQKAAD 301
Cdd:COG5010    80 ALQLDPNNPE------LYYNLALLYSRSGDKDEAKEYYEKALALS---PDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150


                  ..
gi 2217264596 302 LH 303
Cdd:COG5010   151 TS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 219-343 1.99e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.25  E-value: 1.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 219 LEKSRRLAERSTERRLLGHLYNDLGLGYSQLQLFPLAVEAFLQALPLCwvpGEQATVLRNLGMAHNALGNYQEAREFHQK 298
Cdd:COG5010    37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD---PNNPELYYNLALLYSRSGDKDEAKEYYEK 113

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2217264596 299 AADLHGSVGQRWEqgrsfgSLAFALSQLGDHKAARDNYLHALQAA 343
Cdd:COG5010   114 ALALSPDNPNAYS------NLAALLLSLGQDDEAKAALQRALGTS 152
TPR_12 pfam13424
Tetratricopeptide repeat;
122-186 3.68e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 39.29  E-value: 3.68e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 122 NVALAYHALGELPQALAWYHRALGHYQPQGD---QGEAWA--KMGACYQALGQPELAAHCLQEASQAYAQ 186
Cdd:pfam13424   8 NLAAVLRRLGRYDEALELLEKALEIARRLLGpdhPLTATTllNLGRLYLELGRYEEALELLERALALAEK 77
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 31-184 4.96e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 4.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  31 RQEASIQALTRAGHGALQAGQNHEALNNFQRAFLLASKAPQTRdtpvlqacaFNLGAAYVETGDPARGLELLLRAhpeeK 110
Cdd:COG2956   139 LGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL---------LLLAELYLEQGDYEEAIAALERA----L 205

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2217264596 111 AQGRRHGDQCFNVALAYHALGELPQALAWYHRALGHYqPQGDQGEAWAKMgacYQALGQPELAAHCLQEASQAY 184
Cdd:COG2956   206 EQDPDYLPALPRLAELYEKLGDPEEALELLRKALELD-PSDDLLLALADL---LERKEGLEAALALLERQLRRH 275
TPR_10 pfam13374
Tetratricopeptide repeat;
273-303 9.42e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 37.10  E-value: 9.42e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 2217264596 273 ATVLRNLGMAHNALGNYQEAREFHQKAADLH 303
Cdd:pfam13374   2 ASSLNNLANALRAQGRYDEAEELLEEALAIR 32
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 353-381 1.00e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 1.00e-03
                           10        20
                   ....*....|....*....|....*....
gi 2217264596  353 WQACEGLGAAAARLGQYDQALKYYKEALA 381
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALE 29
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
47-179 1.01e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 41.41  E-value: 1.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  47 LQAGQNHEALNNFQRAFllasKAPQTRDTPVLqacaFNLGAAYVETGDPARGLELL---LRAHPEekaqgRRHGDQCFNV 123
Cdd:COG4700   100 LELGRYDEAIELYEEAL----TGIFADDPHIL----LGLAQALFELGRYAEALETLeklIAKNPD-----FKSSDAHLLY 166

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2217264596 124 ALAYHALGELPQALAWYHRALGHYqpqgDQGEAWAKMGACYQALGQPELAAHCLQE 179
Cdd:COG4700   167 ARALEALGDLEAAEAELEALARRY----SGPEARYRYAKFLARQGRTAEAKELLEE 218
TPR_1 pfam00515
Tetratricopeptide repeat;
354-380 1.02e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 1.02e-03
                          10        20
                  ....*....|....*....|....*..
gi 2217264596 354 QACEGLGAAAARLGQYDQALKYYKEAL 380
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKAL 28
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-205 1.51e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.76  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  35 SIQALTRAGHGALQAGQNHEALNNFQRAFLLASKAPQTRdtpvlqacaFNLGAAYVETGDPARGLELLLRAHpeekAQGR 114
Cdd:COG0457    75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEAL---------YNLGLALLELGRYDEAIEAYERAL----ELDP 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 115 RHGDQCFNVALAYHALGELPQALAWYHRALGHYQPQGDQGEAWAKMGACYQALGQPELAAHCLQEASQAYAQERQLRAAA 194
Cdd:COG0457   142 DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221

                         170
                  ....*....|.
gi 2217264596 195 LALGAAAGCML 205
Cdd:COG0457   222 LLLLALALLLA 232
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 273-302 1.74e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 1.74e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 2217264596  273 ATVLRNLGMAHNALGNYQEAREFHQKAADL 302
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 319-409 2.10e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 38.43  E-value: 2.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 319 LAFALSQLGDHKAARDNYLHALQAARDSGDMKgqwQACEGLGAAAARLGQYDQALKYYKEALaqcQKEPDSvrerlvaKL 398
Cdd:COG1729    36 LGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP---DALLKLGLSYLELGDYDKARATLEELI---KKYPDS-------EA 102

                          90
                  ....*....|.
gi 2217264596 399 ADTVRTRLAQV 409
Cdd:COG1729   103 AKEARARLARL 113
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
271-388 2.46e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.90  E-value: 2.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 271 EQATVLRNLGMAHNALGNYQEAREFHQKAADLHGsvgqrwEQGRSFGSLAFALSQLGDHKAARDNYLHALQAARDSGDmk 350
Cdd:COG4785    71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDP------DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAY-- 142

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2217264596 351 gqwqACEGLGAAAARLGQYDQALKYYKEALAQCQKEPD 388
Cdd:COG4785   143 ----AYLNRGIALYYLGRYELAIADLEKALELDPNDPE 176
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 353-381 2.55e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.96  E-value: 2.55e-03
                          10        20
                  ....*....|....*....|....*....
gi 2217264596 353 WQACEGLGAAAARLGQYDQALKYYKEALA 381
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALE 29
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
46-144 2.71e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.46  E-value: 2.71e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  46 ALQAGQNHEALNNFQRAFLLASKAPQTRdtpvlqacaFNLGAAYVETGDP--ARGLELLLRAHPEekaqgrrHGDQCFNV 123
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALELDPDNADAL---------NNLGLLLLEQGRYdeAIALEKALKLDPN-------NAEALLNL 65

                          90       100
                  ....*....|....*....|.
gi 2217264596 124 ALAYHALGELPQALAWYHRAL 144
Cdd:COG3063    66 AELLLELGDYDEALAYLERAL 86
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 46-144 2.73e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 2.73e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  46 ALQAGQNHEALNNFQRAFLLASKAPQTRdtpvlqacaFNLGAAYVETGDPARGLELLLRAHPEEKAQGRRHgdqcFNVAL 125
Cdd:COG5010    64 YNKLGDFEESLALLEQALQLDPNNPELY---------YNLALLYSRSGDKDEAKEYYEKALALSPDNPNAY----SNLAA 130

                          90
                  ....*....|....*....
gi 2217264596 126 AYHALGELPQALAWYHRAL 144
Cdd:COG5010   131 LLLSLGQDDEAKAALQRAL 149
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 54-136 2.75e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596  54 EALNNFQRAFLLASKAPQTRDTpvlqacafnLGAAYVETGDPARGLELLLRAhpeeKAQGRRHGDQCFNVALAYHALGEL 133
Cdd:TIGR02917 821 RALEYAERALKLAPNIPAILDT---------LGWLLVEKGEADRALPLLRKA----VNIAPEAAAIRYHLALALLATGRK 887


                  ...
gi 2217264596 134 PQA 136
Cdd:TIGR02917 888 AEA 890
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 260-388 5.00e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.02  E-value: 5.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2217264596 260 LQALPLCWVPGEQATVLRNLGMAHNALGNYQEAREFHQKAADLHGSVGQRWEQGRSFGSLAFALSQLGDHKAARDNYLHA 339
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 2217264596 340 LQAARDSgdmkgqWQACEGLGAAAARLGQYDQALKYYKEALAQCQKEPD 388
Cdd:COG5010    81 LQLDPNN------PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123
TPR_1 pfam00515
Tetratricopeptide repeat;
273-302 6.25e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 6.25e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 2217264596 273 ATVLRNLGMAHNALGNYQEAREFHQKAADL 302
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALEL 30
TPR_12 pfam13424
Tetratricopeptide repeat;
84-144 7.13e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.83  E-value: 7.13e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2217264596  84 NLGAAYVETGDPARGLELLLRAHPE-EKAQGRRHGDQC---FNVALAYHALGELPQALAWYHRAL 144
Cdd:pfam13424   8 NLAAVLRRLGRYDEALELLEKALEIaRRLLGPDHPLTAttlLNLGRLYLELGRYEEALELLERAL 72
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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