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Conserved domains on  [gi|731372378|ref|XP_010650182|]
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protein KNATM [Vitis vinifera]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KNOX2 super family cl04263
KNOX2 domain; The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a ...
 85-126 8.56e-05

KNOX2 domain; The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization.


The actual alignment was detected with superfamily member pfam03791:

Pssm-ID: 427506  Cd Length: 48  Bit Score: 37.58  E-value: 8.56e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 731372378   85 DLDHFMEAYCMALSNLKEGIEEAQQESASFIKATYLQLGELT 126
Cdd:pfam03791   7 ELDQFMEAYCDVLVKYKEELTRPFEEATEFLREIESQLNSLC 48
KNOX1 super family cl04262
KNOX1 domain; The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a ...
 28-53 9.23e-03

KNOX1 domain; The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization.


The actual alignment was detected with superfamily member pfam03790:

Pssm-ID: 461051  Cd Length: 40  Bit Score: 32.27  E-value: 9.23e-03
                          10        20
                  ....*....|....*....|....*.
gi 731372378   28 ILRKRISGHPLFGLLIENHLNCLKVG 53
Cdd:pfam03790   1 AIKAKIASHPLYPSLLSAYVDCQKVG 26
 
Name Accession Description Interval E-value
KNOX2 pfam03791
KNOX2 domain; The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a ...
 85-126 8.56e-05

KNOX2 domain; The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization.


Pssm-ID: 427506  Cd Length: 48  Bit Score: 37.58  E-value: 8.56e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 731372378   85 DLDHFMEAYCMALSNLKEGIEEAQQESASFIKATYLQLGELT 126
Cdd:pfam03791   7 ELDQFMEAYCDVLVKYKEELTRPFEEATEFLREIESQLNSLC 48
KNOX1 pfam03790
KNOX1 domain; The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a ...
 28-53 9.23e-03

KNOX1 domain; The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization.


Pssm-ID: 461051  Cd Length: 40  Bit Score: 32.27  E-value: 9.23e-03
                          10        20
                  ....*....|....*....|....*.
gi 731372378   28 ILRKRISGHPLFGLLIENHLNCLKVG 53
Cdd:pfam03790   1 AIKAKIASHPLYPSLLSAYVDCQKVG 26
 
Name Accession Description Interval E-value
KNOX2 pfam03791
KNOX2 domain; The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a ...
 85-126 8.56e-05

KNOX2 domain; The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization.


Pssm-ID: 427506  Cd Length: 48  Bit Score: 37.58  E-value: 8.56e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 731372378   85 DLDHFMEAYCMALSNLKEGIEEAQQESASFIKATYLQLGELT 126
Cdd:pfam03791   7 ELDQFMEAYCDVLVKYKEELTRPFEEATEFLREIESQLNSLC 48
KNOX1 pfam03790
KNOX1 domain; The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a ...
 28-53 9.23e-03

KNOX1 domain; The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization.


Pssm-ID: 461051  Cd Length: 40  Bit Score: 32.27  E-value: 9.23e-03
                          10        20
                  ....*....|....*....|....*.
gi 731372378   28 ILRKRISGHPLFGLLIENHLNCLKVG 53
Cdd:pfam03790   1 AIKAKIASHPLYPSLLSAYVDCQKVG 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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