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Conserved domains on  [gi|731384714|ref|XP_010648238|]
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uncharacterized protein LOC104878944 [Vitis vinifera]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DBD_Tnp_Mut super family cl07846
MuDR family transposase; This region is found in plant proteins that are presumed to be the ...
 128-190 9.11e-10

MuDR family transposase; This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown.


The actual alignment was detected with superfamily member pfam03108:

Pssm-ID: 427142  Cd Length: 67  Bit Score: 54.39  E-value: 9.11e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 731384714  128 GLRFESKEDLQYAVKRYAICQNQHLVVCESEPQLWAVRCKKWqeGCNWRLRACRRKSHGMFEI 190
Cdd:pfam03108   7 GQCFPDLAEFRKALRKYAIARQFKFRLRKSDKDRFTVECEGE--GCPWRIHASRRPETGLFEI 67
MULE super family cl48097
MULE transposase domain; This domain was identified by Babu and colleagues.
 326-366 5.31e-07

MULE transposase domain; This domain was identified by Babu and colleagues.


The actual alignment was detected with superfamily member pfam10551:

Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 47.26  E-value: 5.31e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 731384714  326 IIQIDGTFLYGKYMGKLLIATSIDGNGHVFPLAFAIVEEES 366
Cdd:pfam10551   1 VLLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNET 41
 
Name Accession Description Interval E-value
DBD_Tnp_Mut pfam03108
MuDR family transposase; This region is found in plant proteins that are presumed to be the ...
 128-190 9.11e-10

MuDR family transposase; This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown.


Pssm-ID: 427142  Cd Length: 67  Bit Score: 54.39  E-value: 9.11e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 731384714  128 GLRFESKEDLQYAVKRYAICQNQHLVVCESEPQLWAVRCKKWqeGCNWRLRACRRKSHGMFEI 190
Cdd:pfam03108   7 GQCFPDLAEFRKALRKYAIARQFKFRLRKSDKDRFTVECEGE--GCPWRIHASRRPETGLFEI 67
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 326-366 5.31e-07

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 47.26  E-value: 5.31e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 731384714  326 IIQIDGTFLYGKYMGKLLIATSIDGNGHVFPLAFAIVEEES 366
Cdd:pfam10551   1 VLLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNET 41
 
Name Accession Description Interval E-value
DBD_Tnp_Mut pfam03108
MuDR family transposase; This region is found in plant proteins that are presumed to be the ...
 128-190 9.11e-10

MuDR family transposase; This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown.


Pssm-ID: 427142  Cd Length: 67  Bit Score: 54.39  E-value: 9.11e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 731384714  128 GLRFESKEDLQYAVKRYAICQNQHLVVCESEPQLWAVRCKKWqeGCNWRLRACRRKSHGMFEI 190
Cdd:pfam03108   7 GQCFPDLAEFRKALRKYAIARQFKFRLRKSDKDRFTVECEGE--GCPWRIHASRRPETGLFEI 67
MULE pfam10551
MULE transposase domain; This domain was identified by Babu and colleagues.
 326-366 5.31e-07

MULE transposase domain; This domain was identified by Babu and colleagues.


Pssm-ID: 463145 [Multi-domain]  Cd Length: 98  Bit Score: 47.26  E-value: 5.31e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 731384714  326 IIQIDGTFLYGKYMGKLLIATSIDGNGHVFPLAFAIVEEES 366
Cdd:pfam10551   1 VLLIDGTYKTNKYKMPLFTAVGVDHHGQSFPIAFGLVSNET 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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