|
Name |
Accession |
Description |
Interval |
E-value |
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
101-982 |
0e+00 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 1062.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 101 KENLVKQHAKVAEEAVSGWEKAESEAATLKNHLESVTLLKLTAEDRASHLDGALKECMRQIRNLKEEHEQKLHDVIQNKA 180
Cdd:pfam05911 1 KDDLVKQHAKVAEEAVSGWEKAEAEALALKQQLESVTLQKLTAEERAAHLDGALKECMQQLRNVKEEQEQKIHDVVLKKT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 181 KQFDKMKHEFEAKIANLDQQLLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEMLKSNIESCEREINSLKYELHIN 260
Cdd:pfam05911 81 KEWEKIKAELEAKLVETEQELLRAAAENDALSRSLQERENLLMKLSEEKSQAEAEIEALKSRLESCEKEINSLKYELHVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 261 SKELEIRNEEKNMSVRSAEVANKQHLEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVESLGRDYGDSRVKKSQG 340
Cdd:pfam05911 161 SKELEIRNEEKNMSRRSADAAHKQHLESVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVEMLGRDSGETRLRRSPV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 341 RPSSPQFSSLPDFSFDSVQKFHKENEQLTERLLAMEEETKMLKEALAHRNSELQASRSICAKTSSKLQSLEAQLQANLEQ 420
Cdd:pfam05911 241 KNSSPHLSPDPDFSEDSLQTPHKENEFLTERLLAMEEETKMLKEALAKRNSELQASRNMCAKTASKLSQLEAQLEELNQG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 421 kspqkstirRQPSEGSFSH-EANHLPRLASMSEDGNDDNVSCASSWTTALMSDLSNVKKEKNFDSPHKSECA-SHLDLMD 498
Cdd:pfam05911 321 ---------QVSMELASSQnPASNPPSLTSMSEDGSDDEVSCAESWASALISELEHFKKEKPKTKSSCKSVGnSDLELMD 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 499 DFLEMEKLAYQSSDTngavsspdiprnarpettkvDTSVHVSTSPDTQLKERNETIVSEDQASQQEEVSSQSHQP-LLDA 577
Cdd:pfam05911 392 DFLEMEKLACLSNDK--------------------PSNGSHSSSKSSNNKKGEESDSEKDSSESTGKELVPVSSKdISLG 451
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 578 SISMKLQSRISTVLESLSKEADIQRIQEDLREIVQEMRNAvVPQSTKSIVEITLSPKTATESQASLDDGeANLEKEIPVS 657
Cdd:pfam05911 452 KSLSWLQSRISVILESHVTQKSIGKILEDIRCALQDINDS-LPEADSCLSSGHPSTDASCDYITCKENS-SVVEKEGSVS 529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 658 EDSK-SCNESIHGISKELADAMSQIHDFVLFLGKEAKAIQGTAPDGSGINEKLDDFSATYVEVISNRLSMVNFVLDLSHV 736
Cdd:pfam05911 530 GDDKsSEETSKQSIQQDLSKAISKIIDFVEGLSKEALDDQDTSSDSSELSEVLQQFSATCNDVLSGKADLEDFVLELSHI 609
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 737 LSNASQLHFNILGYKNSETEISTSDCIDKVALPENKDLQHSgevyaNGCAHFSDSTSDPDIPHEGSLVPTS-ESTSTSLK 815
Cdd:pfam05911 610 LDWISNHCFSLLDVSSMEDEIKKHDCIDKVTLSENKVAQVD-----NGCSEIDNLSSDPEIPSDGPLVSGSnDLKTEENK 684
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 816 CSLEEVEQLKLEKENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLKCMAESYNSLETRTEELQ 895
Cdd:pfam05911 685 RLKEEFEQLKSEKENLEVELASCTENLESTKSQLQESEQLIAELRSELASLKESNSLAETQLKCMAESYEDLETRLTELE 764
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 896 TEVNRLQAKIESLDNELQEEKKNHQDTLASCKDLEEQLQRMET-------AADLNAKSNQEKDLTAAAEKLAECQETIFL 968
Cdd:pfam05911 765 AELNELRQKFEALEVELEEEKNCHEELEAKCLELQEQLERNEKkessncdADQEDKKLQQEKEITAASEKLAECQETILN 844
|
890
....*....|....*
gi 723696001 969 LGKQLNSLR-PQTEF 982
Cdd:pfam05911 845 LGKQLKALAsPQDAS 859
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
62-944 |
1.83e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.56 E-value: 1.83e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 62 HLTGLEDQVKSLEEQVNGLEdevkdlneklsaAQSEMTNKENLVKQHAKVAEEAVSG--WEKAESEAATLKNHLESVTLL 139
Cdd:TIGR02168 187 NLDRLEDILNELERQLKSLE------------RQAEKAERYKELKAELRELELALLVlrLEELREELEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 140 KLTAEDRASHLDGALKECMRQIRNLKEE--HEQKLHDVIQNKAKQFDKMKHEFEAKIANLDQQLLRsaaensaLSRSLQE 217
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEieELQKELYALANEISRLEQQKQILRERLANLERQLEE-------LEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 218 RSSMVIQLSEEKSQAEAEIEMLKSNIESCEREINSLKYELhinsKELEIRNEEKNMSVRSAEVANKQHLEGVKKIAK--- 294
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL----EELESRLEELEEQLETLRSKVAQLELQIASLNNeie 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 295 -LEAECQRLRglvrkklpgpAALAQMKLEVESLGRDYGDSRVKKSQGRpsspqfsslpdfsfdsVQKFHKENEQLTERLL 373
Cdd:TIGR02168 404 rLEARLERLE----------DRRERLQQEIEELLKKLEEAELKELQAE----------------LEELEEELEELQEELE 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 374 AMEEETKMLKEALAHRNSELQASRSICAKTSSKLQSLEAqLQANLEQKSPQKSTIRRQPSEGSfsheaNHLPRLAsmsed 453
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLER-LQENLEGFSEGVKALLKNQSGLS-----GILGVLS----- 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 454 gndDNVSCASSWTTAL------------MSDLSNVKKEKNFDSPHKSECASH--LDLMDDFLEMEKLAYQSSDTNGAVSS 519
Cdd:TIGR02168 527 ---ELISVDEGYEAAIeaalggrlqavvVENLNAAKKAIAFLKQNELGRVTFlpLDSIKGTEIQGNDREILKNIEGFLGV 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 520 PDIPRNARPETTKVDTS----VHVSTSPDT---QLKE--RNETIVSED------QASQQEEVSSQSHQPLLDASISMKLQ 584
Cdd:TIGR02168 604 AKDLVKFDPKLRKALSYllggVLVVDDLDNaleLAKKlrPGYRIVTLDgdlvrpGGVITGGSAKTNSSILERRREIEELE 683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 585 SRIstvLESLSKEADIQRIQEDLREIVQEMRNavvpqstksivEITLSPKTATESQASLDDGEANLEKEipvSEDSKSCN 664
Cdd:TIGR02168 684 EKI---EELEEKIAELEKALAELRKELEELEE-----------ELEQLRKELEELSRQISALRKDLARL---EAEVEQLE 746
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 665 ESIHGISKELADAMSQIHDFVLFLGKEAKAIQGTAPDGSGINEKLDDFSATyVEVISNRLSMVNFVLDLSHVLsnasqLH 744
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE-LKALREALDELRAELTLLNEE-----AA 820
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 745 FNILGYKNSETEISTSDCIDKVALPENKDLQHSGEVYAngcahfsdstsdPDIPHEGSLVPTSESTSTSLKCSLEEVEQ- 823
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA------------AEIEELEELIEELESELEALLNERASLEEa 888
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 824 ---LKLEKENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQ--------KANSLAETQLKCMAESYNSLETRTE 892
Cdd:TIGR02168 889 lalLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEvridnlqeRLSEEYSLTLEEAEALENKIEDDEE 968
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 893 ELQTEVNRLQAKIESLDN-------ELQEEKKNHQDTLASCKDLEEQLQR-METAADLNA 944
Cdd:TIGR02168 969 EARRRLKRLENKIKELGPvnlaaieEYEELKERYDFLTAQKEDLTEAKETlEEAIEEIDR 1028
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
33-326 |
7.72e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 7.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 33 SDSTESKVEQTKQEIKKPKyvqisvesySHLTGLEDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNKENLVKQHAKVA 112
Cdd:TIGR02168 665 SAKTNSSILERRREIEELE---------EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 113 EEAVSGWEKAESEAATLKNHLESVTLLKLTAEDRASHLDGALKECMRQIRNLKEEHEQklhdvIQNKAKQFDKMKHEFEA 192
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ-----LKEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 193 KIANLDQQLLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEMLKSNIESCEREINSLKYELHINSKELEIRNEEKN 272
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 723696001 273 MSVRSAEVANKQHLEGVKKIAKLEAECQRLRglvrkklpgpAALAQMKLEVESL 326
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELR----------EKLAQLELRLEGL 934
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
22-253 |
6.25e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.47 E-value: 6.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 22 AALTVESASAPSDSTESKVEQTKQEIKKPKYVQISVES-----YSHLTGLEDQVKSLEEQVNGLEDEVKDLNEKLSAAQS 96
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKeekalLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 97 EM-TNKENLVKQHAKVAEEAvsgwekaeseAATLKNHLESVTLLKLTAED--RASHLDGALKECMRQIRNLKEEHEQKLH 173
Cdd:COG4942 91 EIaELRAELEAQKEELAELL----------RALYRLGRQPPLALLLSPEDflDAVRRLQYLKYLAPARREQAEELRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 174 DVIQNKAKQfdkmkhefEAKIANLDQQLLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEMLKSNIESCEREINSL 253
Cdd:COG4942 161 ELAALRAEL--------EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
57-254 |
8.94e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.46 E-value: 8.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 57 VESYSHLTGLEDQVKSLEEQVNGLEdEVKDLNEKLSAAQSEMTNKENLVKQ-HAKVAEEAVsgwEKAESEAATLKNHLES 135
Cdd:COG4913 231 VEHFDDLERAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAAlRLWFAQRRL---ELLEAELEELRAELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 136 VTLLKLTAEDRASHLDGALKECMRQIRN--------LKEE--HEQKLHDVIQNKAKQFDKMKHEFEAKIANLDQQLLRSA 205
Cdd:COG4913 307 LEAELERLEARLDALREELDELEAQIRGnggdrleqLEREieRLERELEERERRRARLEALLAALGLPLPASAEEFAALR 386
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 723696001 206 AENSALSRSLQERSSmviQLSEEKSQAEAEIEMLKSNIESCEREINSLK 254
Cdd:COG4913 387 AEAAALLEALEEELE---ALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
37-282 |
2.05e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.41 E-value: 2.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 37 ESKVEQTKQEIKKPKYVQISVESYSHL-TGLEDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNKENLVKQhakvaeea 115
Cdd:TIGR04523 186 QKNIDKIKNKLLKLELLLSNLKKKIQKnKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQ-------- 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 116 vsgwekAESEAATLKNHLESVTLLKLTAEDRASHLDGALKECMRQIRNLKEEHEQ----KLHDVIQNKAKQFDKMK---- 187
Cdd:TIGR04523 258 ------LKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdwnkELKSELKNQEKKLEEIQnqis 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 188 ------HEFEAKIANLDQQLLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEMLKSNIESCEREInsLKYELHINS 261
Cdd:TIGR04523 332 qnnkiiSQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI--QNQEKLNQQ 409
|
250 260
....*....|....*....|.
gi 723696001 262 KELEIRNEEKNMSVRSAEVAN 282
Cdd:TIGR04523 410 KDEQIKKLQQEKELLEKEIER 430
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
67-237 |
4.26e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.54 E-value: 4.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 67 EDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNKENLVKQHAKVAE--EAVSGWEKAESEAATLKNHLE-----SVTLL 139
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEysWDEIDVASAEREIAELEAELErldasSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 140 KL-----TAEDRASHLDGALKECMRQIRNLKEEHEQKLHDVIQNKAKQFDKMKHEFEAKIANLDQQLLRSAAENSA--LS 212
Cdd:COG4913 689 ALeeqleELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVEreLR 768
|
170 180
....*....|....*....|....*
gi 723696001 213 RSLQERssmVIQLSEEKSQAEAEIE 237
Cdd:COG4913 769 ENLEER---IDALRARLNRAEEELE 790
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
819-964 |
1.09e-06 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 52.21 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 819 EEVEQLKLEKENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLKCMAESYNSLETRTEELQTEV 898
Cdd:COG4372 45 EELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKER 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 723696001 899 NRLQAKIESLDNELQEEKKNHQDTLASCKDLEEQLQRMETAADLNAKSNQEKDLTAAAEKLAECQE 964
Cdd:COG4372 125 QDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLK 190
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
808-981 |
1.20e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 808 ESTSTSLKCSLEEVEQLKLEKENMALDLARYSENLASTKsqlteteQLLADVKSQLVSAQKANSLAETQLKCMAESYNSL 887
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA-------NEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 888 ETRTEELQTEVNRLQAKIESLdnelqeeKKNHQDTLASCKDLEEQLQRMETAADlnaksNQEKDLTAAAEKLAECQETIF 967
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEEL-------KEELESLEAELEELEAELEELESRLE-----ELEEQLETLRSKVAQLELQIA 396
|
170
....*....|....
gi 723696001 968 LLGKQLNSLRPQTE 981
Cdd:TIGR02168 397 SLNNEIERLEARLE 410
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
25-300 |
1.65e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.43 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 25 TVESASAPSDSTESKVEQTKQEIKKPKY-VQISVESYSHLTGLEDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNKEN 103
Cdd:pfam15921 497 TVSDLTASLQEKERAIEATNAEITKLRSrVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQ 576
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 104 LVKQHAKVAEEAVSGWEKAESEAATLKNHLESVTLLK-------LTAEDRASHLD-------GALKECMRQIRNLKEEHE 169
Cdd:pfam15921 577 LVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKdkkdakiRELEARVSDLElekvklvNAGSERLRAVKDIKQERD 656
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 170 QKLHDVIQNKA-------------KQFDKMKHEFEAKIANLDQQLLRSAAENSALSRSLQERSS-----------MVIQL 225
Cdd:pfam15921 657 QLLNEVKTSRNelnslsedyevlkRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGsdghamkvamgMQKQI 736
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 226 SEEKSQAEA---EIEMLKSNIESCEREINSLKYELHINSKELEIRNEEKNMSVRSAEVANKQHLEGVKKIAKLE------ 296
Cdd:pfam15921 737 TAKRGQIDAlqsKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEvaldka 816
|
....*...
gi 723696001 297 ----AECQ 300
Cdd:pfam15921 817 slqfAECQ 824
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
23-252 |
1.74e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.75 E-value: 1.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 23 ALTVESASAPSDSTESKVEQTKQEIKKPKYVQISVESYshLTGLEDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNKE 102
Cdd:COG3883 1 ALALALAAPTPAFADPQIQAKQKELSELQAELEAAQAE--LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 103 NLVKQhakvAEEAVSGWEKAESEAATLKNHLESVtllkLTAEDRASHLDGALKecMRQIrnlkEEHEQKLHDVIQNKAKQ 182
Cdd:COG3883 79 AEIEE----RREELGERARALYRSGGSVSYLDVL----LGSESFSDFLDRLSA--LSKI----ADADADLLEELKADKAE 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 183 FDKMKHEFEAKIANLDQQLLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEMLKSNIESCEREINS 252
Cdd:COG3883 145 LEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
68-416 |
2.00e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 2.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 68 DQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNKENLVKQHAKV-AEEAVSGWEKAESEAATLKNHLESvtlLKLTAEDR 146
Cdd:TIGR02169 180 EEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYeGYELLKEKEALERQKEAIERQLAS---LEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 147 ASHLDGALKECmRQIRNLKEEHEQKLHDVIQNKAKQFDKMKHEFEAKIANLDqqllrsaaensalsRSLQERSSMVIQLS 226
Cdd:TIGR02169 257 TEEISELEKRL-EEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLE--------------RSIAEKERELEDAE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 227 EEKSQAEAEIEMLKSNIESCEREINSLKYELHINSKELEIRNEEKNMSVRSAEVANKQHLEGVKKIAKLEaecQRLRGLV 306
Cdd:TIGR02169 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR---EKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 307 RKKLPGPAALAQMKLEVESLGRDYGDSRVKKSQGRPSSPQFSSLPDFSFDSVQKFHKENEQLTERLLAMEEETKMLKEAL 386
Cdd:TIGR02169 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY 478
|
330 340 350
....*....|....*....|....*....|
gi 723696001 387 AHRNSELQASRsicaktsSKLQSLEAQLQA 416
Cdd:TIGR02169 479 DRVEKELSKLQ-------RELAEAEAQARA 501
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
820-964 |
2.15e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 820 EVEQLKLEKENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLKCMAESYNSLETRTEELQTEVN 899
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 723696001 900 RLQAKIESLDNELQEEKKNHQDTLASCKDLEEQLQRMETAADlnaksNQEKDLTAAAEKLAECQE 964
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE-----EAEEELEEAEAELAEAEE 365
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
38-302 |
3.51e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 51.08 E-value: 3.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 38 SKVEQTKQEIKKPKYVQISVESYShltgLEDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNKENLvkqhakvaEEAVS 117
Cdd:PRK05771 60 DKLRSYLPKLNPLREEKKKVSVKS----LEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQE--------IERLE 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 118 GWEKAESEAATLKnHLESVTLlkltaedRASHLDGALKECMRQI---RNLKEEHEQKLHD--VIQNKAKQFDkmkhEFEA 192
Cdd:PRK05771 128 PWGNFDLDLSLLL-GFKYVSV-------FVGTVPEDKLEELKLEsdvENVEYISTDKGYVyvVVVVLKELSD----EVEE 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 193 KIANLDQQLLRSAAENSAlsrslqerssmviqlSEEKSQAEAEIEMLKSNIESCEREINSLK---YELHINSKE-LEIRN 268
Cdd:PRK05771 196 ELKKLGFERLELEEEGTP---------------SELIREIKEELEEIEKERESLLEELKELAkkyLEELLALYEyLEIEL 260
|
250 260 270
....*....|....*....|....*....|....*..
gi 723696001 269 EEKNMSVRSAEVANKQHLEG---VKKIAKLEAECQRL 302
Cdd:PRK05771 261 ERAEALSKFLKTDKTFAIEGwvpEDRVKKLKELIDKA 297
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
66-422 |
5.62e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 5.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 66 LEDQVKSLEEQVNGLEdEVKDLNEKLSAAQsemtnkenlvkqhakvAEEAVSGWEKAESEAATLKNHLESVTLLKLTAED 145
Cdd:COG1196 198 LERQLEPLERQAEKAE-RYRELKEELKELE----------------AELLLLKLRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 146 RASHLDGalkecmrQIRNLKEEHEQKLHDVIQNKAKQFdkmkhEFEAKIANLDQQLLRSAAENSALSRSLQERSSMVIQL 225
Cdd:COG1196 261 ELAELEA-------ELEELRLELEELELELEEAQAEEY-----ELLAELARLEQDIARLEERRRELEERLEELEEELAEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 226 SEEKSQAEAEIEMLKSNIESCEREINSLKYELHINSKELEIRNEEKNMSVRSAEVANKQHLEGVKKIAKLEAECQRLRGL 305
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 306 VRKKLpgpAALAQMKLEVESLGRDYGDSRVKKSQGRpsspqfsslpdfsfDSVQKFHKENEQLTERLLAMEEETKMLKEA 385
Cdd:COG1196 409 EEALL---ERLERLEEELEELEEALAELEEEEEEEE--------------EALEEAAEEEAELEEEEEALLELLAELLEE 471
|
330 340 350
....*....|....*....|....*....|....*..
gi 723696001 386 LAHRNSELQASRSICAKTSSKLQSLEaQLQANLEQKS 422
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLL-EAEADYEGFL 507
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
61-218 |
8.09e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 48.38 E-value: 8.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 61 SHLTGLEDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNKENLVKQHAKVAEEAVSGWEKAESEAATLKNHLESVTLLK 140
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 141 --LTAEDRASHLDGALKECMRQIRNLKEEHEQkLHDVIQNKAKQFDKMKHEFEAKIANLDQQLLRSAAENSALSRSLQER 218
Cdd:COG1579 97 eiESLKRRISDLEDEILELMERIEELEEELAE-LEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPE 175
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
66-304 |
2.22e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 2.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 66 LEDQVKSLEEQVNGLEDEVK---DLNEKLSAAQSEMTNKENLVKQHAKVAEEAVSGWEKAESEAATLKNHLESVTLLKLT 142
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKrteNIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 143 AEDRASH---LDGALKECMRQIRNLK---EEHEQKLHDV--IQNKAKQFDKMK---HEFEAKIANLDQQLLRSAAENSAL 211
Cdd:PRK03918 247 LESLEGSkrkLEEKIRELEERIEELKkeiEELEEKVKELkeLKEKAEEYIKLSefyEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 212 SRSLQERSSM---VIQLSEEKSQAEAEIEMLKSNIESCErEINSLKYELHINSKELEIRNEEKnmSVRSAEVANKQHLEG 288
Cdd:PRK03918 327 EERIKELEEKeerLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTPEK--LEKELEELEKAKEEI 403
|
250
....*....|....*.
gi 723696001 289 VKKIAKLEAECQRLRG 304
Cdd:PRK03918 404 EEEISKITARIGELKK 419
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
817-985 |
2.27e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.90 E-value: 2.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 817 SLEEVEQLKLEKENMALDLAR-----------YSENLASTKSQLTETEQLLADVKSQLVSAQKANS-LAETQLKCMAESY 884
Cdd:PRK10929 103 STDALEQEILQVSSQLLEKSRqaqqeqdrareISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTpLAQAQLTALQAES 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 885 NSLETRTEELQ---------TEVNRLQAKI-----ESLDNELQE--------EKKNHQDTLASCKDLEEQ--------LQ 934
Cdd:PRK10929 183 AALKALVDELElaqlsannrQELARLRSELakkrsQQLDAYLQAlrnqlnsqRQREAERALESTELLAEQsgdlpksiVA 262
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 723696001 935 RMETAADLNAKSN---QEKDLTAAAEKLAECQetIFLLGKQLNSLRPQTEFMGS 985
Cdd:PRK10929 263 QFKINRELSQALNqqaQRMDLIASQQRQAASQ--TLQVRQALNTLREQSQWLGV 314
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
39-416 |
2.44e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 39 KVEQTKQEIKKPKYVQISVESysHLTGLEDQVKSLEEQVNGLEDEVKDLNEK----------------LSAAQSEMTNKE 102
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEG--SKRKLEEKIRELEERIEELKKEIEELEEKvkelkelkekaeeyikLSEFYEEYLDEL 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 103 NLVKQHAKVAEEAVSGWEKAESEAATLKNHLESVTLLKLTAEDRASHLDGA------LKECMRQIRNLKEEHEQKLHDVI 176
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERhelyeeAKAKKEELERLKKRLTGLTPEKL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 177 QNKAKQFDKMKHEFEAKIANLDQQLLRSAAENSALSRSLQE-------------------RSSMVIQLSEEKSQAEAEIE 237
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkakgkcpvcgrelteehRKELLEEYTAELKRIEKELK 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 238 MLKSNIESCEREINSLKYELHINSKEL-------EIRNEEKNMSVRSAE--VANKQHLEGVK-KIAKLEAECQRLRGLVR 307
Cdd:PRK03918 470 EIEEKERKLRKELRELEKVLKKESELIklkelaeQLKELEEKLKKYNLEelEKKAEEYEKLKeKLIKLKGEIKSLKKELE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 308 KKLPGPAALAQMKLEVESLgrdygDSRVKKSQGRPSSPQFSSLPDFS--FDSVQKFHKEneqlTERLLAMEEETKMLKEA 385
Cdd:PRK03918 550 KLEELKKKLAELEKKLDEL-----EEELAELLKELEELGFESVEELEerLKELEPFYNE----YLELKDAEKELEREEKE 620
|
410 420 430
....*....|....*....|....*....|.
gi 723696001 386 LAHRNSELQASRSICAKTSSKLQSLEAQLQA 416
Cdd:PRK03918 621 LKKLEEELDKAFEELAETEKRLEELRKELEE 651
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
819-977 |
2.65e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 819 EEVEQLKLEKENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLKCMAESYNSLETRTEELQTEV 898
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 899 NRLQAKIESLDNELQEEKKNHQDTLASCKDLEEQLQRMETA--ADLNAKSNQEKDLTAAAEKLAECQETIFLLGKQLNSL 976
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAllEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
.
gi 723696001 977 R 977
Cdd:COG1196 406 E 406
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
27-301 |
2.91e-05 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 48.31 E-value: 2.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 27 ESASAPSDSTESKVEQTKQEIKKPKyvqisvESYSHLT--GLEDQVKSLEEQVN----------GLEDEVKDLNEKLSAA 94
Cdd:PLN03229 425 EAVKTPVRELEGEVEKLKEQILKAK------ESSSKPSelALNEMIEKLKKEIDleyteaviamGLQERLENLREEFSKA 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 95 QSE-MTNKENLVKQHAKVAEEAVSGWEKAESEAAtLKNHLE---------SVTLLKLTAEDRASHLDGALKECMRQiRNL 164
Cdd:PLN03229 499 NSQdQLMHPVLMEKIEKLKDEFNKRLSRAPNYLS-LKYKLDmlnefsrakALSEKKSKAEKLKAEINKKFKEVMDR-PEI 576
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 165 KEEHEQKLHDVIQNKAKQFD-----------KMKHEFEAKIANldqqLLRSAAENSALSRSLQerssmvIQLSEEKSQAE 233
Cdd:PLN03229 577 KEKMEALKAEVASSGASSGDeldddlkekveKMKKEIELELAG----VLKSMGLEVIGVTKKN------KDTAEQTPPPN 646
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 723696001 234 aeiemLKSNIESCEREINSlKYELHINSKELEIRNEEknMSVRSAEVANKQHLEGVKKIAKLEAECQR 301
Cdd:PLN03229 647 -----LQEKIESLNEEINK-KIERVIRSSDLKSKIEL--LKLEVAKASKTPDVTEKEKIEALEQQIKQ 706
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
819-966 |
4.53e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 4.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 819 EEVEQLKLEKENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLKCMAESYNSLETRTEELQTEV 898
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL 346
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 899 NRLQAKIESLDNELQEEKKNHQDTLASCKDLEEQLQRM--ETAADLNAKSNQEKDLTAAAEKLAECQETI 966
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELaeELLEALRAAAELAAQLEELEEAEEALLERL 416
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
819-981 |
5.05e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 819 EEVEQLKLEKENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLKCMAESYNSLETRTEELQTEV 898
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 899 NRLQAKIESLDNELQEEKKNHQDTLASCKDLEEQLQRMETAAD--LNAKSNQEKDLTAAAEKLAECQETIFLLGKQLNSL 976
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAeaEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
....*
gi 723696001 977 RPQTE 981
Cdd:COG1196 399 AAQLE 403
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
808-976 |
5.92e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 5.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 808 ESTSTSLKCSLEEVEQLKLEKENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLKCMAESYNSL 887
Cdd:TIGR02168 722 EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 888 ETRTEELQTEVNRLQAKIESLDNELQEEKKNHQDTLASCKDLEEQLQRMetaadlnaksnqEKDLTAAAEKLAECQETIF 967
Cdd:TIGR02168 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL------------SEDIESLAAEIEELEELIE 869
|
....*....
gi 723696001 968 LLGKQLNSL 976
Cdd:TIGR02168 870 ELESELEAL 878
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
82-270 |
9.75e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 9.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 82 DEVKDLNEKLSAAQSEMTNKENLVKQHAKVAEEavsgWEKAESEAATLKNHLESVTLLK--LTAEDRASHLDGALKECMR 159
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEE----LEELEAELEELREELEKLEKLLqlLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 160 QIRNLKEEHEQklhdvIQNKAKQFDKMkhefEAKIANLDQQLLRSAAENSALSRS-LQERSSMVIQLSEEKSQAEAEIEM 238
Cdd:COG4717 147 RLEELEERLEE-----LRELEEELEEL----EAELAELQEELEELLEQLSLATEEeLQDLAEELEELQQRLAELEEELEE 217
|
170 180 190
....*....|....*....|....*....|..
gi 723696001 239 LKSNIESCEREINSLKYELHINSKELEIRNEE 270
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEERLKEAR 249
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
34-250 |
1.05e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 34 DSTESKVEQTKQEIKkpkyvQISvESYSHLTGLEDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNKENLVKQHAKVAE 113
Cdd:COG4913 664 ASAEREIAELEAELE-----RLD-ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 114 EAVSGWEKAESEAATLKnhlesvtLLKLTAEDRASHLDGALKECMRQIRNLKEEHEQKLhdviqnkAKQFDKMKHEFEAK 193
Cdd:COG4913 738 AAEDLARLELRALLEER-------FAAALGDAVERELRENLEERIDALRARLNRAEEEL-------ERAMRAFNREWPAE 803
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 723696001 194 IANLDQQlLRSAAENSALSRSLQERSsmVIQLSEE-----KSQAEAEIEMLKSNIESCEREI 250
Cdd:COG4913 804 TADLDAD-LESLPEYLALLDRLEEDG--LPEYEERfkellNENSIEFVADLLSKLRRAIREI 862
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
162-431 |
1.28e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 162 RNLKEEHEQKLHDVIQNKAKQFDKMKHEFEAKIANLDQQLLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEMLKS 241
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 242 NIESCEREINSLKYELHINSKELEIRNEEKNMSVRSAEVANKQHLEGVKKIAKLEAECQRLRGLVRKKLpgpAALAQMKL 321
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE---EALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 322 EVESLGRDygDSRVKKSQGRPSSPQFSSLpdfsfDSVQKFHKENEQLTERLLAMEEETKMLKEALAHRNSELQASRSICA 401
Cdd:COG1196 373 ELAEAEEE--LEELAEELLEALRAAAELA-----AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270
....*....|....*....|....*....|
gi 723696001 402 KTSSKLQSLEAQLQANLEQKSPQKSTIRRQ 431
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALL 475
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
155-420 |
1.75e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 155 KECMRQIRNLKEEHEQK-LHDVIqnkakqfdkmkHEFEAKIANLDQQLLRsAAENSALSRSLQERSSMVIQLSEEKSQA- 232
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKdLHERL-----------NGLESELAELDEEIER-YEEQREQARETRDEADEVLEEHEERREEl 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 233 ---EAEIEMLKSNIESCEREINSLKYELHINSKELEIRNEEKNMSVRSAEVANkqhlegvkkiAKLEAECQRLRGLVRKK 309
Cdd:PRK02224 254 etlEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDD----------ADAEAVEARREELEDRD 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 310 lpgpaalaqmklevESLGRDYGDSRVkksqgrpsspqfsslpdfsfdSVQKFHKENEQLTERLLAMEEETKMLKEALAHR 389
Cdd:PRK02224 324 --------------EELRDRLEECRV---------------------AAQAHNEEAESLREDADDLEERAEELREEAAEL 368
|
250 260 270
....*....|....*....|....*....|.
gi 723696001 390 NSELQASRSICAKTSSKLQSLEAQLQANLEQ 420
Cdd:PRK02224 369 ESELEEAREAVEDRREEIEELEEEIEELRER 399
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
819-977 |
2.84e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 819 EEVEQLKLEKENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLkcmaesyNSLETRTEELQTEV 898
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL-------AALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 899 NRLQAKIESLDNELQE-----EKKNHQDTLA---SCKDLEEQLQRMETAADLN-AKSNQEKDLTAAAEKLAECQETIFLL 969
Cdd:COG4942 93 AELRAELEAQKEELAEllralYRLGRQPPLAlllSPEDFLDAVRRLQYLKYLApARREQAEELRADLAELAALRAELEAE 172
|
....*...
gi 723696001 970 GKQLNSLR 977
Cdd:COG4942 173 RAELEALL 180
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
58-259 |
3.79e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 3.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 58 ESYSHLTGLEDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEmtnKENLVKQHAKVAEEAVSGWEKAESEAATLKNHLESVT 137
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIAR---KQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPS 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 138 --LLKLTAE--DRASHLDGALKE------------CMRQIRNlKEEHEQKLHDVIQNKAKQFDKMK-------------- 187
Cdd:PHA02562 255 aaLNKLNTAaaKIKSKIEQFQKVikmyekggvcptCTQQISE-GPDRITKIKDKLKELQHSLEKLDtaideleeimdefn 333
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 723696001 188 ------HEFEAKIANLDQQLLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEMLKSNIESCEREinslKYELHI 259
Cdd:PHA02562 334 eqskklLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE----KYHRGI 407
|
|
| DUF4515 |
pfam14988 |
Domain of unknown function (DUF4515); This family of proteins is found in bacteria and ... |
156-301 |
4.57e-04 |
|
Domain of unknown function (DUF4515); This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 198 and 469 amino acids in length. There are two completely conserved L residues that may be functionally important.
Pssm-ID: 405647 [Multi-domain] Cd Length: 206 Bit Score: 42.83 E-value: 4.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 156 ECMRQIRNLKEEHEQKLHDVIQNKakqfDKMKHEFEAKIANLDQQLLRSAAENSALSRSLQErssmVIQLSEEKSQAEAE 235
Cdd:pfam14988 15 EKQKKIEKLWNQYVQECEEIERRR----QELASRYTQQTAELQTQLLQKEKEQASLKKELQA----LRPFAKLKESQERE 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 723696001 236 IEMLKSNIESCEREINSLKYELHINSKELEIRNEEKNMSVRSAEVANKQHLEGVKKIAKLEAECQR 301
Cdd:pfam14988 87 IQDLEEEKEKVRAETAEKDREAHLQFLKEKALLEKQLQELRILELGERATRELKRKAQALKLAAKQ 152
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
846-977 |
8.67e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 8.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 846 KSQLTETE-QLLADvksQLVSAQKANSLAETQLKCMAESYNSLETRTEELQTEVNRLQAKIESLDNELQEEKKNHQDTLA 924
Cdd:TIGR02168 219 KAELRELElALLVL---RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 723696001 925 SCKDLEEQLQRM-ETAADLNAKS--------NQEKDLTAAAEKLAECQETIFLLGKQLNSLR 977
Cdd:TIGR02168 296 EISRLEQQKQILrERLANLERQLeeleaqleELESKLDELAEELAELEEKLEELKEELESLE 357
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
184-421 |
1.45e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 184 DKMKHEFE---AKIANLDQQLLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEMLKSNIESCEREINSLKYELHIN 260
Cdd:TIGR02169 684 EGLKRELSslqSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 261 SKELEIRNEEKNmSVRSAEVANKQHL------EGVKKIAKLEAECQRLRGLVRKklpgpaalAQMKLEVESLGRDYGDSR 334
Cdd:TIGR02169 764 EARIEELEEDLH-KLEEALNDLEARLshsripEIQAELSKLEEEVSRIEARLRE--------IEQKLNRLTLEKEYLEKE 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 335 VKKSQGRPSSPQfsslpdfsfDSVQKFHKENEQLTERLLAMEEETKMLKEALAH---RNSELQASRSICAKTSSKLQSLE 411
Cdd:TIGR02169 835 IQELQEQRIDLK---------EQIKSIEKEIENLNGKKEELEEELEELEAALRDlesRLGDLKKERDELEAQLRELERKI 905
|
250
....*....|
gi 723696001 412 AQLQANLEQK 421
Cdd:TIGR02169 906 EELEAQIEKK 915
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
37-256 |
1.79e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 37 ESKVEQTKQEiKKPKYVQISVESYSHLTgLEDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNKENLVKQHAKVAEEAV 116
Cdd:TIGR04523 397 ESKIQNQEKL-NQQKDEQIKKLQQEKEL-LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLS 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 117 SGWEKAESEAATLKNHLESVT--LLKLTAEDraSHLDGALKECMRQIRNLKEEhEQKLHDVIQNKAKQFDKMKHEFEAK- 193
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEkeLKKLNEEK--KELEEKVKDLTKKISSLKEK-IEKLESEKKEKESKISDLEDELNKDd 551
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 723696001 194 -----------IANLDQQLLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEMLKSNIESCEREINSLKYE 256
Cdd:TIGR04523 552 felkkenlekeIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
819-933 |
1.95e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 819 EEVEQLKLEKENMALDLARYSENLASTKSQLTETEQLLADVKS---------QLVSAQKANSLAETQLKCMAESYNSLET 889
Cdd:COG1579 45 ARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkeyealqkEIESLKRRISDLEDEILELMERIEELEE 124
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 723696001 890 RTEELQTEVNRLQAKIESLDNELQEEKKNHQDTLASCKDLEEQL 933
Cdd:COG1579 125 ELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
818-957 |
2.05e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 818 LEEVEQlKLEK---ENMALDLAR----YSENLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLKCMAES--YNSLE 888
Cdd:COG3206 191 LEEAEA-ALEEfrqKNGLVDLSEeaklLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpvIQQLR 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 889 TRTEELQTE--------------VNRLQAKIESLDNELQEEKKNHQDTL--------ASCKDLEEQLQRMET-AADLNAK 945
Cdd:COG3206 270 AQLAELEAElaelsarytpnhpdVIALRAQIAALRAQLQQEAQRILASLeaelealqAREASLQAQLAQLEArLAELPEL 349
|
170
....*....|..
gi 723696001 946 SNQEKDLTAAAE 957
Cdd:COG3206 350 EAELRRLEREVE 361
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
841-960 |
2.30e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 41.64 E-value: 2.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 841 NLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLKCMAESYNSLETRTEELQTEVNRLQAkiesldNELQEEKKNHQ 920
Cdd:TIGR04320 248 PIPNPPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQA------QALQTAQNNLA 321
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 723696001 921 DTLASCKDLEEQLQRMETA-ADLNAksnqekDLTAAAEKLA 960
Cdd:TIGR04320 322 TAQAALANAEARLAKAKEAlANLNA------DLAKKQAALD 356
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
837-959 |
2.49e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 837 RYSENLASTKSQLTETEQLLadvksQLVSAQKANslAETQLKCMAESYNSLETRTEELQTEVNRLQAKIESLDNELQEEK 916
Cdd:pfam01576 458 KLSKDVSSLESQLQDTQELL-----QEETRQKLN--LSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMK 530
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 723696001 917 KNHQDTLASCKDLEEQLQRMetAADLNAKSNQEKDLTAAAEKL 959
Cdd:pfam01576 531 KKLEEDAGTLEALEEGKKRL--QRELEALTQQLEEKAAAYDKL 571
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
37-135 |
2.64e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 37 ESKVEQTKQEIKKPKYVQISVESYSHLTGLEDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNKENLVKQHAKVAEEAV 116
Cdd:COG1579 65 ELEIEEVEARIKKYEEQLGNVRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKK 144
|
90
....*....|....*....
gi 723696001 117 SGWEKAESEAATLKNHLES 135
Cdd:COG1579 145 AELDEELAELEAELEELEA 163
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
64-300 |
2.66e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 64 TGLEDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNK-ENLVKQHAKVAEEAVSgweKAESEAATLKNHLESvtllklt 142
Cdd:pfam15921 220 SAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKiELLLQQHQDRIEQLIS---EHEVEITGLTEKASS------- 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 143 AEDRASHLDGALKECMRQIRNLKEEHEQKLHDV---IQNKAKQFDKMKHEFEAKIANLDQQLLRSaaeNSALSRSLQERS 219
Cdd:pfam15921 290 ARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLestVSQLRSELREAKRMYEDKIEELEKQLVLA---NSELTEARTERD 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 220 smviQLSEEKSQAEAEIEMLKSNIESCEREInSLKYELHIN------SKELEIRNEEKNMSVRSAEVankQHLEGVKKia 293
Cdd:pfam15921 367 ----QFSQESGNLDDQLQKLLADLHKREKEL-SLEKEQNKRlwdrdtGNSITIDHLRRELDDRNMEV---QRLEALLK-- 436
|
....*..
gi 723696001 294 KLEAECQ 300
Cdd:pfam15921 437 AMKSECQ 443
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
853-960 |
2.78e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 853 EQLLADVKSQLVSAQKANSLAETQLKCMAESYNSLETRTEELQTEVNRLQAKIESLDNELQEEKKNHQDTLASCKDLEEQ 932
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
90 100
....*....|....*....|....*...
gi 723696001 933 LQRMETAADLNAKSNQEKDLTAAAEKLA 960
Cdd:COG4942 229 IARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
67-302 |
2.90e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 67 EDQVKSLEEQVNGLEDEVKDLNEKLSaaqSEMTNKENLVKQHAKVAEEAVSGWE---KAESEAATLKNHLESVTLLKLTA 143
Cdd:TIGR04523 67 EEKINNSNNKIKILEQQIKDLNDKLK---KNKDKINKLNSDLSKINSEIKNDKEqknKLEVELNKLEKQKKENKKNIDKF 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 144 EDRASHLDGALKECMRQIRNLKEEHEQklhdvIQNKAKQFDKMKHEFEAKIANLDQQLLRSAAENSALSRSLQERSSMVI 223
Cdd:TIGR04523 144 LTEIKKKEKELEKLNNKYNDLKKQKEE-----LENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLES 218
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 723696001 224 QLSEEKSQAEAeiemLKSNIESCEREINSLKYELHINSKELEIRNEEKNMSVRSAEVANKQHLEGVKKIAKLEAECQRL 302
Cdd:TIGR04523 219 QISELKKQNNQ----LKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQL 293
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
821-917 |
3.19e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 821 VEQLKLEKENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLKCMAESYNSLETRTEELQTEVNR 900
Cdd:COG4942 145 APARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
90
....*....|....*..
gi 723696001 901 LQAKIESLDNELQEEKK 917
Cdd:COG4942 225 LEALIARLEAEAAAAAE 241
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
829-963 |
3.22e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.77 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 829 ENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLKCMAESYNSLEtrteelQTEVNRLQAKIESL 908
Cdd:smart00787 143 EGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD------PTELDRAKEKLKKL 216
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 723696001 909 DNELQEEKKNHQdtlasckDLEEQLQRMETA-ADLNAKSNQEKDLTAAAEK-LAECQ 963
Cdd:smart00787 217 LQEIMIKVKKLE-------ELEEELQELESKiEDLTNKKSELNTEIAEAEKkLEQCR 266
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
817-939 |
3.54e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.59 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 817 SLEEVEQLKLEKENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQKanSLAETQLKCMAESYNSLETRTEELQT 896
Cdd:PRK03918 596 ELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRK--ELEELEKKYSEEEYEELREEYLELSR 673
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 723696001 897 EVNRLQAKIESLDNELQEEKKNhqdtlasCKDLEEQLQRMETA 939
Cdd:PRK03918 674 ELAGLRAELEELEKRREEIKKT-------LEKLKEELEEREKA 709
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
201-431 |
3.77e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 201 LLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEMLKSNIESCEREINSLKYElhINSKELEIRNEEKNMSVRSAEV 280
Cdd:COG4942 8 ALLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERR--IAALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 281 ANKQhlegvKKIAKLEAECQRLRGLVRKKLP-----GPAALAQMKLEVESLGRDYGDSRVkksqgrpsspqFSSLPDFSF 355
Cdd:COG4942 86 AELE-----KEIAELRAELEAQKEELAELLRalyrlGRQPPLALLLSPEDFLDAVRRLQY-----------LKYLAPARR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 723696001 356 DSVQKFHKENEQLTERLLAMEEETKMLKEALAhrnsELQASRSICAKTSSKLQSLEAQLQANLEQKSPQKSTIRRQ 431
Cdd:COG4942 150 EQAEELRADLAELAALRAELEAERAELEALLA----ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
66-289 |
3.84e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 3.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 66 LEDQVKSLEEQVNGLEDEVKDLNEKLSAAQSEMTNKENLVKQHAKVAEEAVSGWEKAESEAATLKNHLESVtllkltaED 145
Cdd:TIGR02169 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEV-------DK 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 146 RASHLDGALKECMRQIRNLKEEHEQklhdvIQNKAKQFDKMKHEFEAKIANLDQQL---------LRSAAENSALSRSLQ 216
Cdd:TIGR02169 379 EFAETRDELKDYREKLEKLKREINE-----LKRELDRLQEELQRLSEELADLNAAIagieakineLEEEKEDKALEIKKQ 453
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 723696001 217 ERSSMviQLSEEKSQAEAEIEMLKSNIESCEREINSLKYELHINSKELEIRNEEKNMSVRSAEVANKQhLEGV 289
Cdd:TIGR02169 454 EWKLE--QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAS-IQGV 523
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
18-339 |
4.30e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.26 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 18 SEKPAALTVESASAPSDSTESKVEQTKQEIKKPKYVQISVESYSHLTGLEDQVKSLEEQVNG----LEDEVKDLNEKLSA 93
Cdd:pfam15921 274 SEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREakrmYEDKIEELEKQLVL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 94 AQSEMTnkenlvkqhakvaeEAVSGWEKAESEAATLKNHLEsvtllKLTAEdrashLDGALKECmrqirNLKEEHEQKLH 173
Cdd:pfam15921 354 ANSELT--------------EARTERDQFSQESGNLDDQLQ-----KLLAD-----LHKREKEL-----SLEKEQNKRLW 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 174 DVIQNKAKQFDKMKHEFEAKIANLDQ--------------QLLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEML 239
Cdd:pfam15921 405 DRDTGNSITIDHLRRELDDRNMEVQRleallkamksecqgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEEL 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 240 ---KSNIESCEREINSLKYELHINSKELEIRNEE--KNMSVRSAEVANKQHLEGVKK-IAKLEAECQRLRGLVRKKLPGP 313
Cdd:pfam15921 485 takKMTLESSERTVSDLTASLQEKERAIEATNAEitKLRSRVDLKLQELQHLKNEGDhLRNVQTECEALKLQMAEKDKVI 564
|
330 340 350
....*....|....*....|....*....|
gi 723696001 314 AALAQ----MKLEVESLGRDYGDSRVKKSQ 339
Cdd:pfam15921 565 EILRQqienMTQLVGQHGRTAGAMQVEKAQ 594
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
163-398 |
4.48e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 163 NLKEEHEQKLHDvIQNKAKQFDKMKHEFEAKIANLDQQLLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEMLKSN 242
Cdd:COG4942 20 DAAAEAEAELEQ-LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 243 IESCEREINSLKYELHINSK----ELEIRNEEKNMSVRSAEVANKQHLEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQ 318
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 319 MKLEVESLGRDYGDSRVKKSQgrpsspqfsslpdfsfdSVQKFHKENEQLTERLLAMEEETKMLKEALAHRNSELQASRS 398
Cdd:COG4942 179 LLAELEEERAALEALKAERQK-----------------LLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
814-964 |
5.34e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 5.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 814 LKCSLEEVEQLK------LEKENMALDLARYSENLASTKSQLTETEQLLADVKSQLVSAQKA---------NSLAETQ-- 876
Cdd:PRK11281 96 LRQAQAELEALKddndeeTRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQperaqaalyANSQRLQqi 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 877 ---LKCMAESYNSL-ETRTEELQTEVNRLQAKIESLDNELQEEKKnHQDTLASCKDL-EEQLQRME-TAADLNAKSNQeK 950
Cdd:PRK11281 176 rnlLKGGKVGGKALrPSQRVLLQAEQALLNAQNDLQRKSLEGNTQ-LQDLLQKQRDYlTARIQRLEhQLQLLQEAINS-K 253
|
170
....*....|....
gi 723696001 951 DLTAAAEKLAECQE 964
Cdd:PRK11281 254 RLTLSEKTVQEAQS 267
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
74-346 |
5.56e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.93 E-value: 5.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 74 EEQVNGLEDEVKDLNEKLSAAQSEMTNKEnlvKQHAKVAEEAVSGWEKAESEA-------------ATLKNHLESVtLLK 140
Cdd:pfam01576 4 EEEMQAKEEELQKVKERQQKAESELKELE---KKHQQLCEEKNALQEQLQAETelcaeaeemrarlAARKQELEEI-LHE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 141 LTA-----EDRASHLDGALKECMRQIRNLKEEHEQklhdviQNKAKQFDKM-KHEFEAKIANLDQQLLRSAAENSALSRs 214
Cdd:pfam01576 80 LESrleeeEERSQQLQNEKKKMQQHIQDLEEQLDE------EEAARQKLQLeKVTTEAKIKKLEEDILLLEDQNSKLSK- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 215 lqERSSMVIQLSEEKSQAEAEIEMLKSniescereINSL--KYELHINSKELEIRNEEKnmsVRSAEVANKQHLEGV--- 289
Cdd:pfam01576 153 --ERKLLEERISEFTSNLAEEEEKAKS--------LSKLknKHEAMISDLEERLKKEEK---GRQELEKAKRKLEGEstd 219
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 723696001 290 --KKIAKLEAECQRLRGLVRKKLPGPAAlAQMKLEVESLGRDYGDSRVKKSQGRPSSPQ 346
Cdd:pfam01576 220 lqEQIAELQAQIAELRAQLAKKEEELQA-ALARLEEETAQKNNALKKIRELEAQISELQ 277
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
820-919 |
6.52e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 40.13 E-value: 6.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 820 EVEQLKLEKENMALDLARYSenlASTKSQLTETEQLLADVKSQLVSAQKANSLA---ETQLKCMAESYNSLETRTEELQT 896
Cdd:pfam09787 115 ELERLQEELRYLEEELRRSK---ATLQSRIKDREAEIEKLRNQLTSKSQSSSSQselENRLHQLTETLIQKQTMLEALST 191
|
90 100
....*....|....*....|....*.
gi 723696001 897 EVNRLQAKIESLD---NELQEEKKNH 919
Cdd:pfam09787 192 EKNSLVLQLERMEqqiKELQGEGSNG 217
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
839-949 |
6.67e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 6.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 839 SENLASTKSQLTETEQLLADVKSQLVSAQKANSLAETQLKCMAESYNSLETRTEELQTEVNRLQAKIESLDNELQEEKKN 918
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110
....*....|....*....|....*....|.
gi 723696001 919 HQDTLASCKDLEEQLQRMETAADLNAKSNQE 949
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPE 129
|
|
| Lebercilin |
pfam15619 |
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of ... |
74-249 |
6.90e-03 |
|
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of eukaryotic ciliary proteins. Mutations in the gene, LCA5, are implicated in the disease Leber congenital amaurosis. In photoreceptors, lebercilin is uniquely localized at the cilium that bridges the inner and outer segments. Lebercilin functions as an integral element of selective protein transport through photoreceptor cilia. Lebercilin specifically interacts with the intraflagellar transport (IFT), and disruption of IFT can lead to Leber congenital amaurosis.
Pssm-ID: 464776 [Multi-domain] Cd Length: 193 Bit Score: 39.12 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 74 EEQVNGLEDEVKDLNEKLSAaqsemTNKEN-LVKQHAKVAEEAVSGWEKAESE-AATLKNHLESVTLLKL---TAEDRAS 148
Cdd:pfam15619 10 LHKIKELQNELAELQSKLEE-----LRKENrLLKRLQKRQEKALGKYEGTESElPQLIARHNEEVRVLRErlrRLQEKER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 149 HLDGALKECMRQIRNLKEEHeQKLHDVIQNK--------AKQFDKMKHEFEA---KIANLDQQLlrsAAENSALSRSLQE 217
Cdd:pfam15619 85 DLERKLKEKEAELLRLRDQL-KRLEKLSEDKnlaereelQKKLEQLEAKLEDkdeKIQDLERKL---ELENKSFRRQLAA 160
|
170 180 190
....*....|....*....|....*....|..
gi 723696001 218 RSSMVIQLSEEKSQAEAEIEMLKSNIESCERE 249
Cdd:pfam15619 161 EKKKHKEAQEEVKILQEEIERLQQKLKEKERE 192
|
|
| DUF4618 |
pfam15397 |
Domain of unknown function (DUF4618); This family of proteins is found in eukaryotes. Proteins ... |
158-257 |
7.47e-03 |
|
Domain of unknown function (DUF4618); This family of proteins is found in eukaryotes. Proteins in this family are typically between 238 and 363 amino acids in length. There are two conserved sequence motifs: EYP and KCTPD.
Pssm-ID: 464704 [Multi-domain] Cd Length: 258 Bit Score: 39.55 E-value: 7.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 158 MRQIRNLKEEHEQKLHDViqNKAKQFDKMKheFEAKIANLDQQLLRSAAEN--SALSRSLQerssmviQLSEEKSQAEAE 235
Cdd:pfam15397 126 VRQLQQLKDSQQDELDEL--EEMRRMVLES--LSRKIQKKKEKILSSLAEKtlSPYQESLL-------QKTRDNQVMLKE 194
|
90 100
....*....|....*....|..
gi 723696001 236 IEMLKSNIESCEREINSLKYEL 257
Cdd:pfam15397 195 IEQFREFIDELEEEIPKLKAEV 216
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
818-977 |
8.01e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 8.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 818 LEEVEQLKLEKENMALDLARYSENLAstksQLTETEQLLADVKSQLVSAQKANSLAETQLKcmaesYNSLETRTEELQTE 897
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQE----ELEELEEELEELEAELEELREELEKLEKLLQ-----LLPLYQELEALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 898 VNRLQAKIESLDNELQEEKKNHQDTLASCKDLEEQLQRMETAADLNAKSnQEKDLTAAAEKLAECQETIFLLGKQLNSLR 977
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA-TEEELQDLAEELEELQQRLAELEEELEEAQ 219
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
9-434 |
8.21e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 8.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 9 KKKSSDKTASEKPAALTVESASAPSDSTESKVEQTKQEIKKPKYVQISVESYSHLTGLEDQVKSLEEQVNGLEDEVKDLN 88
Cdd:PTZ00121 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD 1421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 89 EklSAAQSEMTNKENLVKQHAKVAEEAVSGWEKAES--EAATLKNHLES---VTLLKLTAED--RASHLDGALKECMRQI 161
Cdd:PTZ00121 1422 E--AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEakKAEEAKKKAEEakkADEAKKKAEEakKADEAKKKAEEAKKKA 1499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 162 RNLKEEHEQKlhdviqnkaKQFDKMKHEFEAKIANlDQQLLRSAAENSALSRSLQERSSMVIQLSEEKSQAEAEIEMLKS 241
Cdd:PTZ00121 1500 DEAKKAAEAK---------KKADEAKKAEEAKKAD-EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEA 1569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 242 NIESCEREINSLKYELhinSKELEIRNEEKNMSVRSAEVANKQHLEGVKKIAKLEAECQRLRGLVRKKLPG-PAALAQMK 320
Cdd:PTZ00121 1570 KKAEEDKNMALRKAEE---AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQlKKKEAEEK 1646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723696001 321 LEVESLGRDYGDSRVKKSQgrpsspqfsslpdfsfdsVQKFHKENEQLTERLLAMEEETKMLKEALAHRNSELQASRSIC 400
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAE------------------EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
|
410 420 430
....*....|....*....|....*....|....
gi 723696001 401 AKTSSKLQSLEaQLQANLEQKSPQKSTIRRQPSE 434
Cdd:PTZ00121 1709 KKEAEEKKKAE-ELKKAEEENKIKAEEAKKEAEE 1741
|
|
| |
