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Conserved domains on  [gi|723689002|ref|XP_010319209|]
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uncharacterized protein LOC101251464 [Solanum lycopersicum]

Protein Classification

alpha/beta hydrolase( domain architecture ID 11437497)

alpha/beta hydrolase catalyzes the hydrolysis of substrates with different chemical composition or physicochemical properties using a nucleophile-His-acid catalytic triad

CATH:  3.40.50.1820
EC:  3.-.-.-
Gene Ontology:  GO:0016787
PubMed:  19508187|12369917|37582413

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FrsA COG1073
Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms]; ...
 33-279 1.43e-39

Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms];


:

Pssm-ID: 440691 [Multi-domain]  Cd Length: 253  Bit Score: 143.52  E-value: 1.43e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002  33 RKYKREDFELKNERGHTLRCSHYTPSsfPDGAPLPCVIYCHGNSGCRADANEAAVILLSSNITVVTLDFSGSGLSDGNYV 112
Cdd:COG1073    6 DKVNKEDVTFKSRDGIKLAGDLYLPA--GASKKYPAVVVAHGNGGVKEQRALYAQRLAELGFNVLAFDYRGYGESEGEPR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002 113 SLGWHEKDDLKVVVSHLRSNLKV--SRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSNLFDLM-MELVDVYKIRLPK 189
Cdd:COG1073   84 EEGSPERRDARAAVDYLRTLPGVdpERIGLLGISLGGGYALNAAATDPRVKAVILDSPFTSLEDLAaQRAKEARGAYLPG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002 190 FTIKVAVQYMrhviqkkakfDIMRlncLQVSPKTYI-----PALFGHAKDDKFVQPHHSDLIYKSYAGDKNIIKFDG-DH 263
Cdd:COG1073  164 VPYLPNVRLA----------SLLN---DEFDPLAKIekisrPLLFIHGEKDEAVPFYMSEDLYEAAAEPKELLIVPGaGH 230

                        250
                 ....*....|....*.
gi 723689002 264 NssrpQFYYDSVSIFF 279
Cdd:COG1073  231 V----DLYDRPEEEYF 242
 
Name Accession Description Interval E-value
FrsA COG1073
Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms]; ...
 33-279 1.43e-39

Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms];


Pssm-ID: 440691 [Multi-domain]  Cd Length: 253  Bit Score: 143.52  E-value: 1.43e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002  33 RKYKREDFELKNERGHTLRCSHYTPSsfPDGAPLPCVIYCHGNSGCRADANEAAVILLSSNITVVTLDFSGSGLSDGNYV 112
Cdd:COG1073    6 DKVNKEDVTFKSRDGIKLAGDLYLPA--GASKKYPAVVVAHGNGGVKEQRALYAQRLAELGFNVLAFDYRGYGESEGEPR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002 113 SLGWHEKDDLKVVVSHLRSNLKV--SRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSNLFDLM-MELVDVYKIRLPK 189
Cdd:COG1073   84 EEGSPERRDARAAVDYLRTLPGVdpERIGLLGISLGGGYALNAAATDPRVKAVILDSPFTSLEDLAaQRAKEARGAYLPG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002 190 FTIKVAVQYMrhviqkkakfDIMRlncLQVSPKTYI-----PALFGHAKDDKFVQPHHSDLIYKSYAGDKNIIKFDG-DH 263
Cdd:COG1073  164 VPYLPNVRLA----------SLLN---DEFDPLAKIekisrPLLFIHGEKDEAVPFYMSEDLYEAAAEPKELLIVPGaGH 230

                        250
                 ....*....|....*.
gi 723689002 264 NssrpQFYYDSVSIFF 279
Cdd:COG1073  231 V----DLYDRPEEEYF 242
Hydrolase_4 pfam12146
Serine aminopeptidase, S33; This domain is found in bacteria and eukaryotes and is ...
 63-261 6.13e-07

Serine aminopeptidase, S33; This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.


Pssm-ID: 463473 [Multi-domain]  Cd Length: 238  Bit Score: 50.68  E-value: 6.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002   63 GAPLPCVIYCHG---NSGCRAdanEAAVILLSSNITVVTLDFSGSGLSDG--NYVSlGWHE-KDDLKVVVSHLRSNLKVS 136
Cdd:pfam12146   1 GEPRAVVVLVHGlgeHSGRYA---HLADALAAQGFAVYAYDHRGHGRSDGkrGHVP-SFDDyVDDLDTFVDKIREEHPGL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002  137 RIGLWGRSMGAVTSLLYGAEDP-SIAGMVLDSAF--------SNLFDLMMELVDVYKIRLpKFTIKVAVQYM---RHVIQ 204
Cdd:pfam12146  77 PLFLLGHSMGGLIAALYALRYPdKVDGLILSAPAlkikpylaPPILKLLAKLLGKLFPRL-RVPNNLLPDSLsrdPEVVA 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 723689002  205 KKAKF-------------DIMRL--NCLQVSPKTYIPALFGHAKDDKFVQPHHSDLIYKSyAG--DKNIIKFDG 261
Cdd:pfam12146 156 AYAADplvhggisartlyELLDAgeRLLRRAAAITVPLLLLHGGADRVVDPAGSREFYER-AGstDKTLKLYPG 228
 
Name Accession Description Interval E-value
FrsA COG1073
Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms]; ...
 33-279 1.43e-39

Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms];


Pssm-ID: 440691 [Multi-domain]  Cd Length: 253  Bit Score: 143.52  E-value: 1.43e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002  33 RKYKREDFELKNERGHTLRCSHYTPSsfPDGAPLPCVIYCHGNSGCRADANEAAVILLSSNITVVTLDFSGSGLSDGNYV 112
Cdd:COG1073    6 DKVNKEDVTFKSRDGIKLAGDLYLPA--GASKKYPAVVVAHGNGGVKEQRALYAQRLAELGFNVLAFDYRGYGESEGEPR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002 113 SLGWHEKDDLKVVVSHLRSNLKV--SRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSNLFDLM-MELVDVYKIRLPK 189
Cdd:COG1073   84 EEGSPERRDARAAVDYLRTLPGVdpERIGLLGISLGGGYALNAAATDPRVKAVILDSPFTSLEDLAaQRAKEARGAYLPG 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002 190 FTIKVAVQYMrhviqkkakfDIMRlncLQVSPKTYI-----PALFGHAKDDKFVQPHHSDLIYKSYAGDKNIIKFDG-DH 263
Cdd:COG1073  164 VPYLPNVRLA----------SLLN---DEFDPLAKIekisrPLLFIHGEKDEAVPFYMSEDLYEAAAEPKELLIVPGaGH 230

                        250
                 ....*....|....*.
gi 723689002 264 NssrpQFYYDSVSIFF 279
Cdd:COG1073  231 V----DLYDRPEEEYF 242
DAP2 COG1506
Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];
41-268 2.03e-23

Dipeptidyl aminopeptidase/acylaminoacyl peptidase [Amino acid transport and metabolism];


Pssm-ID: 441115 [Multi-domain]  Cd Length: 234  Bit Score: 98.55  E-value: 2.03e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002  41 ELKNERGHTLRCSHYTPssfPDGAPLPCVIYCHGNSGCRADANEAAVILLSSN-ITVVTLDFSGSGLSDGNYvslGWHEK 119
Cdd:COG1506    1 TFKSADGTTLPGWLYLP---ADGKKYPVVVYVHGGPGSRDDSFLPLAQALASRgYAVLAPDYRGYGESAGDW---GGDEV 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002 120 DDLKVVVSHLRSNLKV--SRIGLWGRSMGAVTSLLYGAEDPS-IAGMVLDSAFSNLFDLMmelvdvykirlpKFTIKVAV 196
Cdd:COG1506   75 DDVLAAIDYLAARPYVdpDRIGIYGHSYGGYMALLAAARHPDrFKAAVALAGVSDLRSYY------------GTTREYTE 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002 197 QYMRHVIQKKAKFDimrlnclQVSPKTYI-----PALFGHAKDDKFVQPHHSDLIY---KSYAGDKNIIKFDG-DHNSSR 267
Cdd:COG1506  143 RLMGGPWEDPEAYA-------ARSPLAYAdklktPLLLIHGEADDRVPPEQAERLYealKKAGKPVELLVYPGeGHGFSG 215


                 .
gi 723689002 268 P 268
Cdd:COG1506  216 A 216
PldB COG2267
Lysophospholipase, alpha-beta hydrolase superfamily [Lipid transport and metabolism];
36-263 2.35e-17

Lysophospholipase, alpha-beta hydrolase superfamily [Lipid transport and metabolism];


Pssm-ID: 441868 [Multi-domain]  Cd Length: 221  Bit Score: 80.82  E-value: 2.35e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002  36 KREDFELKNERGHTLRCSHYTPSSFPDGAplpcVIYCHGNSGCRADANEAAVILLSSNITVVTLDFSGSGLSDGNYVSLG 115
Cdd:COG2267    2 TRRLVTLPTRDGLRLRGRRWRPAGSPRGT----VVLVHGLGEHSGRYAELAEALAAAGYAVLAFDLRGHGRSDGPRGHVD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002 116 WHEK--DDLKVVVSHLRSNLKVsRIGLWGRSMGAVTSLLYGAEDPS-IAGMVLDSAFSNLFDLMMelvdvykirlpkfti 192
Cdd:COG2267   78 SFDDyvDDLRAALDALRARPGL-PVVLLGHSMGGLIALLYAARYPDrVAGLVLLAPAYRADPLLG--------------- 141

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 723689002 193 kVAVQYMR--HVIQKKAKFDimrlnclqvspktyIPALFGHAKDDKFVQPHHSDLIYKSYAGDKNIIKFDG-DH 263
Cdd:COG2267  142 -PSARWLRalRLAEALARID--------------VPVLVLHGGADRVVPPEAARRLAARLSPDVELVLLPGaRH 200
YvaK COG1647
Esterase/lipase [Secondary metabolites biosynthesis, transport and catabolism];
67-263 5.23e-15

Esterase/lipase [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 441253 [Multi-domain]  Cd Length: 246  Bit Score: 74.59  E-value: 5.23e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002  67 PCVIYCHGNSGCRADANEAAVILLSSNITVVTLDFSGSGLSDGNYVSLGWHE-KDDLKVVVSHLRSnlKVSRIGLWGRSM 145
Cdd:COG1647   16 KGVLLLHGFTGSPAEMRPLAEALAKAGYTVYAPRLPGHGTSPEDLLKTTWEDwLEDVEEAYEILKA--GYDKVIVIGLSM 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002 146 GAVTSLLYGAEDPSIAGMVLDSAFSNLFDLMMELVDVYKiRLPKFtIKVAVQYMRHVIQKKAKFDIMRLNCLQ------- 218
Cdd:COG1647   94 GGLLALLLAARYPDVAGLVLLSPALKIDDPSAPLLPLLK-YLARS-LRGIGSDIEDPEVAEYAYDRTPLRALAelqrlir 171

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 723689002 219 -VS---PKTYIPALFGHAKDDKFVQPHHSDLIYKSYAG-DKNIIKF-DGDH 263
Cdd:COG1647  172 eVRrdlPKITAPTLIIQSRKDEVVPPESARYIYERLGSpDKELVWLeDSGH 222
Hydrolase_4 pfam12146
Serine aminopeptidase, S33; This domain is found in bacteria and eukaryotes and is ...
 63-261 6.13e-07

Serine aminopeptidase, S33; This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.


Pssm-ID: 463473 [Multi-domain]  Cd Length: 238  Bit Score: 50.68  E-value: 6.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002   63 GAPLPCVIYCHG---NSGCRAdanEAAVILLSSNITVVTLDFSGSGLSDG--NYVSlGWHE-KDDLKVVVSHLRSNLKVS 136
Cdd:pfam12146   1 GEPRAVVVLVHGlgeHSGRYA---HLADALAAQGFAVYAYDHRGHGRSDGkrGHVP-SFDDyVDDLDTFVDKIREEHPGL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002  137 RIGLWGRSMGAVTSLLYGAEDP-SIAGMVLDSAF--------SNLFDLMMELVDVYKIRLpKFTIKVAVQYM---RHVIQ 204
Cdd:pfam12146  77 PLFLLGHSMGGLIAALYALRYPdKVDGLILSAPAlkikpylaPPILKLLAKLLGKLFPRL-RVPNNLLPDSLsrdPEVVA 155

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 723689002  205 KKAKF-------------DIMRL--NCLQVSPKTYIPALFGHAKDDKFVQPHHSDLIYKSyAG--DKNIIKFDG 261
Cdd:pfam12146 156 AYAADplvhggisartlyELLDAgeRLLRRAAAITVPLLLLHGGADRVVDPAGSREFYER-AGstDKTLKLYPG 228
DLH COG0412
Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism];
36-162 7.99e-07

Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 440181 [Multi-domain]  Cd Length: 226  Bit Score: 49.96  E-value: 7.99e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002  36 KREDFELKNERGHTLRCSHYTPssfPDGAPLPCVIYCHGNSGCRADANEAAVILLSSNITVVTLD-FSGSGLSD-----G 109
Cdd:COG0412    2 TTETVTIPTPDGVTLPGYLARP---AGGGPRPGVVVLHEIFGLNPHIRDVARRLAAAGYVVLAPDlYGRGGPGDdpdeaR 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 723689002 110 NYVSLGWHEK--DDLKVVVSHLRSNLKV--SRIGLWGRSMGAVTSLLYGAEDPSIAG 162
Cdd:COG0412   79 ALMGALDPELlaADLRAALDWLKAQPEVdaGRVGVVGFCFGGGLALLAAARGPDLAA 135
MenH COG0596
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, ...
 61-252 1.32e-06

2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440361 [Multi-domain]  Cd Length: 221  Bit Score: 49.23  E-value: 1.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002  61 PDGAPlpcVIYCHGNSGCRADANEAAViLLSSNITVVTLDFSGSGLSDGNYVSLGWHE-KDDLKVVVSHlrsnLKVSRIG 139
Cdd:COG0596   21 PDGPP---VVLLHGLPGSSYEWRPLIP-ALAAGYRVIAPDLRGHGRSDKPAGGYTLDDlADDLAALLDA----LGLERVV 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002 140 LWGRSMGAVTSLLYGAEDPS-IAGMVldsafsnlfdLMMELVDVYK--IRLPKFTIKVAVQYMRHVIQKKAKFDIMRLNC 216
Cdd:COG0596   93 LVGHSMGGMVALELAARHPErVAGLV----------LVDEVLAALAepLRRPGLAPEALAALLRALARTDLRERLARITV 162

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 723689002 217 lqvspktyiPALFGHAKDDKFVQPHHSDLIYKSYAG 252
Cdd:COG0596  163 ---------PTLVIWGEKDPIVPPALARRLAELLPN 189
Abhydrolase_1 pfam00561
alpha/beta hydrolase fold; This catalytic domain is found in a very wide range of enzymes.
 69-190 6.76e-06

alpha/beta hydrolase fold; This catalytic domain is found in a very wide range of enzymes.


Pssm-ID: 395444 [Multi-domain]  Cd Length: 245  Bit Score: 47.50  E-value: 6.76e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002   69 VIYCHGNSGCRaDANEAAVILLSSNI-TVVTLDFSGSGLSDGnyvSLGWHE--KDDLKVVVSHLRSNLKVSRIGLWGRSM 145
Cdd:pfam00561   3 VLLLHGLPGSS-DLWRKLAPALARDGfRVIALDLRGFGKSSR---PKAQDDyrTDDLAEDLEYILEALGLEKVNLVGHSM 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 723689002  146 GAVTSLLYGAEDPS-IAGMVLDSAFSNLFDLmMELVDVYKIRLPKF 190
Cdd:pfam00561  79 GGLIALAYAAKYPDrVKALVLLGALDPPHEL-DEADRFILALFPGF 123
COG4188 COG4188
Predicted dienelactone hydrolase [General function prediction only];
31-168 2.78e-04

Predicted dienelactone hydrolase [General function prediction only];


Pssm-ID: 443342 [Multi-domain]  Cd Length: 326  Bit Score: 42.79  E-value: 2.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002  31 GGRKYKREDFELKN-ERGHTLRCSHYTPSS----FPDGAPLPCVIYCHGNSGCRADANEAAVILLSSNITVVTLDFSGSG 105
Cdd:COG4188   22 GPFAVGVQTLTLRDpSRDRPLPVDVWYPATapadAPAGGPFPLVVLSHGLGGSREGYAYLAEHLASHGYVVAAPDHPGSN 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002 106 LSDGNYVSLG----------WHEKDDLKVVVSHL-RSNLKVS---------RIGLWGRSMGAVTSLLygaedpsIAGMVL 165
Cdd:COG4188  102 AADLSAALDGladaldpeelWERPLDLSFVLDQLlALNKSDPplagrldldRIGVIGHSLGGYTALA-------LAGARL 174


                 ...
gi 723689002 166 DSA 168
Cdd:COG4188  175 DFA 177
Peptidase_S15 pfam02129
X-Pro dipeptidyl-peptidase (S15 family);
54-174 8.28e-04

X-Pro dipeptidyl-peptidase (S15 family);


Pssm-ID: 396621 [Multi-domain]  Cd Length: 264  Bit Score: 41.17  E-value: 8.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 723689002   54 HYTPSsfPDGAPLPCVI----YCHGNSGCRADAN-EAAVILLSSNITVVTLDFSGSGLSDGNYVSLGWHEKDDLKVVVSH 128
Cdd:pfam02129   9 IYRPT--KTGGPVPALLtrspYGARRDGASDLALaHPEWEFAARGYAVVYQDVRGTGGSEGVFTVGGPQEAADGKDVIDW 86

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 723689002  129 LR----SNlkvSRIGLWGRSMGAVTSLLYGAE-DPSIAGMVLDSAFSNLFD 174
Cdd:pfam02129  87 LAgqpwCN---GKVGMTGISYLGTTQLAAAATgPPGLKAIAPESGISDLYD 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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