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Conserved domains on  [gi|698588349|ref|XP_009779433|]
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PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Nicotiana sylvestris]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 1907908)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAR1 super family cl44389
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 87-176 2.28e-27

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


The actual alignment was detected with superfamily member pfam03101:

Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 100.87  E-value: 2.28e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698588349   87 DFYMAYGRRIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYIHRKDRVlpPPPATREGCPAILRVALR-ESKWVVT 165
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGEARR--PRPSTRTGCKAMIVVKREsDGKWVVT 78

                          90
                  ....*....|.
gi 698588349  166 KFVEEHNHALM 176
Cdd:pfam03101  79 QFVKEHNHELL 89
 
Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 87-176 2.28e-27

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 100.87  E-value: 2.28e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698588349   87 DFYMAYGRRIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYIHRKDRVlpPPPATREGCPAILRVALR-ESKWVVT 165
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGEARR--PRPSTRTGCKAMIVVKREsDGKWVVT 78

                          90
                  ....*....|.
gi 698588349  166 KFVEEHNHALM 176
Cdd:pfam03101  79 QFVKEHNHELL 89
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 68-181 4.95e-16

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 77.34  E-value: 4.95e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698588349  68 DDAIEPQIGMEFNSRDDARDFYMAYGRRIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFR---EKKYIHRKDRVLPPPPA 144
Cdd:PLN03097  69 DTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKreyDKSFNRPRARQTKQDPE 148

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 698588349 145 TREG--------CPAILRVALR-ESKWVVTKFVEEHNHALMSPSKV 181
Cdd:PLN03097 149 NGTGrrscaktdCKASMHVKRRpDGKWVIHSFVKEHNHELLPAQAV 194
 
Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 87-176 2.28e-27

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 100.87  E-value: 2.28e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698588349   87 DFYMAYGRRIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYIHRKDRVlpPPPATREGCPAILRVALR-ESKWVVT 165
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGEARR--PRPSTRTGCKAMIVVKREsDGKWVVT 78

                          90
                  ....*....|.
gi 698588349  166 KFVEEHNHALM 176
Cdd:pfam03101  79 QFVKEHNHELL 89
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 68-181 4.95e-16

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 77.34  E-value: 4.95e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 698588349  68 DDAIEPQIGMEFNSRDDARDFYMAYGRRIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFR---EKKYIHRKDRVLPPPPA 144
Cdd:PLN03097  69 DTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKreyDKSFNRPRARQTKQDPE 148

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 698588349 145 TREG--------CPAILRVALR-ESKWVVTKFVEEHNHALMSPSKV 181
Cdd:PLN03097 149 NGTGrrscaktdCKASMHVKRRpDGKWVIHSFVKEHNHELLPAQAV 194
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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