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Conserved domains on  [gi|685309101|ref|XP_009145180|]
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uncharacterized protein LOC103868875 [Brassica rapa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1985 pfam09331
Domain of unknown function (DUF1985); Members of this family of functionally uncharacterized ...
 88-218 2.14e-52

Domain of unknown function (DUF1985); Members of this family of functionally uncharacterized domains are found in a set of Arabidopsis thaliana hypothetical proteins.


:

Pssm-ID: 462759  Cd Length: 133  Bit Score: 179.04  E-value: 2.14e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685309101   88 KKHEAWFLFAGKPIRFSIRKFALVTGLNCRKFPKKSKKKSK--NFMTKKPyWGELFGSLKEVPVSSVLRMLEQKTIVDKD 165
Cdd:pfam09331   2 KKHELWFLFNGKPIRFSLREFAIVTGLNCGKFPKELEDKEKknRLIKKKP-YGKLFGEKKEVTVTDLIRMLENKTWTSDE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 685309101  166 IRLKYTYLSLLAAVILPTTHAPRISKECAEKIKDLDAILAYPWGRVSFDMLMS 218
Cdd:pfam09331  81 DRVKLALLYFLHGVLLATDLNPKIILEHAFLVVDLGEFESYPWGRLSFDELIK 133
Peptidase_C48 super family cl23802
Ulp1 protease family, C-terminal catalytic domain; This domain contains the catalytic triad ...
 675-799 2.90e-09

Ulp1 protease family, C-terminal catalytic domain; This domain contains the catalytic triad Cys-His-Asn.


The actual alignment was detected with superfamily member pfam02902:

Pssm-ID: 420019  Cd Length: 202  Bit Score: 57.85  E-value: 2.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685309101  675 VVFMDTKFLSHFTKlYTKFSKLSRKDGF--------KFTPDIVDmflqlpsyADAVrfYSPFFVDKKYWVTVCVDCSSWT 746
Cdd:pfam02902  29 VHFLNSFFYSKLTS-KVSFKWGKKKDFYngvrrwtrKNKKWLFD--------VDII--YIPINWDGKHWVLLIINLPKKT 97

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 685309101  747 VTVLDCNTALRSDymmTKDVRPIASLFPYLLKQVLD----------FSMEVGPGIPRR---CPCGA 799
Cdd:pfam02902  98 ITILDSLISLHTD---KEYIRPINAMLPYLMSEALKkeqddpdltpFEIKRLTKVPQQpnsGDCGP 160
zf-GRF super family cl46396
GRF zinc finger; This presumed zinc binding domain is found in a variety of DNA-binding ...
 795-834 1.02e-06

GRF zinc finger; This presumed zinc binding domain is found in a variety of DNA-binding proteins. It seems likely that this domain is involved in nucleic acid binding. It is named GRF after three conserved residues in the centre of the alignment of the domain. This zinc finger may be related to pfam01396.


The actual alignment was detected with superfamily member pfam06839:

Pssm-ID: 480736  Cd Length: 45  Bit Score: 46.24  E-value: 1.02e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 685309101  795 CPCGAATVVLT-SKTKENPGRRFYRCEVvfGENHV---FKWADK 834
Cdd:pfam06839   3 CPCGQRAVLLTvRKTGPNPGRQFYKCPV--GREKQcgfFQWADE 44
 
Name Accession Description Interval E-value
DUF1985 pfam09331
Domain of unknown function (DUF1985); Members of this family of functionally uncharacterized ...
 88-218 2.14e-52

Domain of unknown function (DUF1985); Members of this family of functionally uncharacterized domains are found in a set of Arabidopsis thaliana hypothetical proteins.


Pssm-ID: 462759  Cd Length: 133  Bit Score: 179.04  E-value: 2.14e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685309101   88 KKHEAWFLFAGKPIRFSIRKFALVTGLNCRKFPKKSKKKSK--NFMTKKPyWGELFGSLKEVPVSSVLRMLEQKTIVDKD 165
Cdd:pfam09331   2 KKHELWFLFNGKPIRFSLREFAIVTGLNCGKFPKELEDKEKknRLIKKKP-YGKLFGEKKEVTVTDLIRMLENKTWTSDE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 685309101  166 IRLKYTYLSLLAAVILPTTHAPRISKECAEKIKDLDAILAYPWGRVSFDMLMS 218
Cdd:pfam09331  81 DRVKLALLYFLHGVLLATDLNPKIILEHAFLVVDLGEFESYPWGRLSFDELIK 133
Peptidase_C48 pfam02902
Ulp1 protease family, C-terminal catalytic domain; This domain contains the catalytic triad ...
 675-799 2.90e-09

Ulp1 protease family, C-terminal catalytic domain; This domain contains the catalytic triad Cys-His-Asn.


Pssm-ID: 397169  Cd Length: 202  Bit Score: 57.85  E-value: 2.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685309101  675 VVFMDTKFLSHFTKlYTKFSKLSRKDGF--------KFTPDIVDmflqlpsyADAVrfYSPFFVDKKYWVTVCVDCSSWT 746
Cdd:pfam02902  29 VHFLNSFFYSKLTS-KVSFKWGKKKDFYngvrrwtrKNKKWLFD--------VDII--YIPINWDGKHWVLLIINLPKKT 97

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 685309101  747 VTVLDCNTALRSDymmTKDVRPIASLFPYLLKQVLD----------FSMEVGPGIPRR---CPCGA 799
Cdd:pfam02902  98 ITILDSLISLHTD---KEYIRPINAMLPYLMSEALKkeqddpdltpFEIKRLTKVPQQpnsGDCGP 160
zf-GRF pfam06839
GRF zinc finger; This presumed zinc binding domain is found in a variety of DNA-binding ...
 795-834 1.02e-06

GRF zinc finger; This presumed zinc binding domain is found in a variety of DNA-binding proteins. It seems likely that this domain is involved in nucleic acid binding. It is named GRF after three conserved residues in the centre of the alignment of the domain. This zinc finger may be related to pfam01396.


Pssm-ID: 462017  Cd Length: 45  Bit Score: 46.24  E-value: 1.02e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 685309101  795 CPCGAATVVLT-SKTKENPGRRFYRCEVvfGENHV---FKWADK 834
Cdd:pfam06839   3 CPCGQRAVLLTvRKTGPNPGRQFYKCPV--GREKQcgfFQWADE 44
 
Name Accession Description Interval E-value
DUF1985 pfam09331
Domain of unknown function (DUF1985); Members of this family of functionally uncharacterized ...
 88-218 2.14e-52

Domain of unknown function (DUF1985); Members of this family of functionally uncharacterized domains are found in a set of Arabidopsis thaliana hypothetical proteins.


Pssm-ID: 462759  Cd Length: 133  Bit Score: 179.04  E-value: 2.14e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685309101   88 KKHEAWFLFAGKPIRFSIRKFALVTGLNCRKFPKKSKKKSK--NFMTKKPyWGELFGSLKEVPVSSVLRMLEQKTIVDKD 165
Cdd:pfam09331   2 KKHELWFLFNGKPIRFSLREFAIVTGLNCGKFPKELEDKEKknRLIKKKP-YGKLFGEKKEVTVTDLIRMLENKTWTSDE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 685309101  166 IRLKYTYLSLLAAVILPTTHAPRISKECAEKIKDLDAILAYPWGRVSFDMLMS 218
Cdd:pfam09331  81 DRVKLALLYFLHGVLLATDLNPKIILEHAFLVVDLGEFESYPWGRLSFDELIK 133
Peptidase_C48 pfam02902
Ulp1 protease family, C-terminal catalytic domain; This domain contains the catalytic triad ...
 675-799 2.90e-09

Ulp1 protease family, C-terminal catalytic domain; This domain contains the catalytic triad Cys-His-Asn.


Pssm-ID: 397169  Cd Length: 202  Bit Score: 57.85  E-value: 2.90e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685309101  675 VVFMDTKFLSHFTKlYTKFSKLSRKDGF--------KFTPDIVDmflqlpsyADAVrfYSPFFVDKKYWVTVCVDCSSWT 746
Cdd:pfam02902  29 VHFLNSFFYSKLTS-KVSFKWGKKKDFYngvrrwtrKNKKWLFD--------VDII--YIPINWDGKHWVLLIINLPKKT 97

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 685309101  747 VTVLDCNTALRSDymmTKDVRPIASLFPYLLKQVLD----------FSMEVGPGIPRR---CPCGA 799
Cdd:pfam02902  98 ITILDSLISLHTD---KEYIRPINAMLPYLMSEALKkeqddpdltpFEIKRLTKVPQQpnsGDCGP 160
zf-GRF pfam06839
GRF zinc finger; This presumed zinc binding domain is found in a variety of DNA-binding ...
 795-834 1.02e-06

GRF zinc finger; This presumed zinc binding domain is found in a variety of DNA-binding proteins. It seems likely that this domain is involved in nucleic acid binding. It is named GRF after three conserved residues in the centre of the alignment of the domain. This zinc finger may be related to pfam01396.


Pssm-ID: 462017  Cd Length: 45  Bit Score: 46.24  E-value: 1.02e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 685309101  795 CPCGAATVVLT-SKTKENPGRRFYRCEVvfGENHV---FKWADK 834
Cdd:pfam06839   3 CPCGQRAVLLTvRKTGPNPGRQFYKCPV--GREKQcgfFQWADE 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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