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Conserved domains on  [gi|685288906|ref|XP_009135404|]
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protein GRAVITROPIC IN THE LIGHT 1 [Brassica rapa]

Protein Classification

GIL1 family protein( domain architecture ID 10522128)

GIL1 family protein is a DUF641 domain-containing protein similar to Arabidopsis thaliana protein GRAVITROPIC IN THE LIGHT 1 that is required for red (R) and far red (FR) light-induced and phytochrome-mediated deregulation of negative gravitropism leading to randomization of hypocotyl growth orientation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF641 pfam04859
Plant protein of unknown function (DUF641); Plant protein of unknown function.
 67-192 2.01e-57

Plant protein of unknown function (DUF641); Plant protein of unknown function.


:

Pssm-ID: 461458 [Multi-domain]  Cd Length: 127  Bit Score: 185.10  E-value: 2.01e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685288906   67 EKTLSMEALLAKLFATVSSIKSSYAQLQYAQSPYDPAGIQKADRLVVSELKTLSELKQSFLKNEFDTN-PDITLVLAEIQ 145
Cdd:pfam04859   1 ERAAAMEALVAKLFAAVSALKAAYAQLQEAHSPYDPEKIQAADAAVVSELRKLSELKRRYRRKQKDPNsPGGSALAAEIQ 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 685288906  146 EMRSLSKTYEIMGKKMECQLKLKDSEIIFLKEKFQESKNQNKLMEKR 192
Cdd:pfam04859  81 EQQSLLKTYEITVKKLEAELKAKDSEIDSLREKLDEAERSNRKLEKK 127
 
Name Accession Description Interval E-value
DUF641 pfam04859
Plant protein of unknown function (DUF641); Plant protein of unknown function.
 67-192 2.01e-57

Plant protein of unknown function (DUF641); Plant protein of unknown function.


Pssm-ID: 461458 [Multi-domain]  Cd Length: 127  Bit Score: 185.10  E-value: 2.01e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685288906   67 EKTLSMEALLAKLFATVSSIKSSYAQLQYAQSPYDPAGIQKADRLVVSELKTLSELKQSFLKNEFDTN-PDITLVLAEIQ 145
Cdd:pfam04859   1 ERAAAMEALVAKLFAAVSALKAAYAQLQEAHSPYDPEKIQAADAAVVSELRKLSELKRRYRRKQKDPNsPGGSALAAEIQ 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 685288906  146 EMRSLSKTYEIMGKKMECQLKLKDSEIIFLKEKFQESKNQNKLMEKR 192
Cdd:pfam04859  81 EQQSLLKTYEITVKKLEAELKAKDSEIDSLREKLDEAERSNRKLEKK 127
 
Name Accession Description Interval E-value
DUF641 pfam04859
Plant protein of unknown function (DUF641); Plant protein of unknown function.
 67-192 2.01e-57

Plant protein of unknown function (DUF641); Plant protein of unknown function.


Pssm-ID: 461458 [Multi-domain]  Cd Length: 127  Bit Score: 185.10  E-value: 2.01e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685288906   67 EKTLSMEALLAKLFATVSSIKSSYAQLQYAQSPYDPAGIQKADRLVVSELKTLSELKQSFLKNEFDTN-PDITLVLAEIQ 145
Cdd:pfam04859   1 ERAAAMEALVAKLFAAVSALKAAYAQLQEAHSPYDPEKIQAADAAVVSELRKLSELKRRYRRKQKDPNsPGGSALAAEIQ 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 685288906  146 EMRSLSKTYEIMGKKMECQLKLKDSEIIFLKEKFQESKNQNKLMEKR 192
Cdd:pfam04859  81 EQQSLLKTYEITVKKLEAELKAKDSEIDSLREKLDEAERSNRKLEKK 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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