NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|685285912|ref|XP_009133875|]
View 

LOB domain-containing protein 11 [Brassica rapa]

Protein Classification

LOB domain-containing protein( domain architecture ID 10505015)

LOB (Lateral Organ Boundaries) domain-containing protein plays a potential role in lateral organ development of plants

PubMed:  12068116

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LOB pfam03195
Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a ...
 54-151 4.94e-63

Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a plant-specific protein of unknown function that is expressed at the adaxial base of initiating lateral organs. The N-terminal of the LOB protein contains an approximately 100-amino acid conserved domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins as well as in proteins from a variety of other plant species. The LOB domain contains conserved blocks of amino acids that identify the LOB domain (LBD) gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is the defining feature of the LOB domain, is present in all LBD proteins.


:

Pssm-ID: 460843  Cd Length: 99  Bit Score: 191.55  E-value: 4.94e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685285912   54 PCAACKILRRRCADKCVLAPYFPPTDPAKFIIAHRVFGASNIIKFLQELPESQRTDTVNSMVYEAGARMRDPVYGCAGAI 133
Cdd:pfam03195   1 PCAACKYLRRKCTPDCILAPYFPADQPEKFANVHKVFGASNVIKLLKELPPEQRADAVKSLIYEANARLRDPVYGCVGII 80

                          90
                  ....*....|....*...
gi 685285912  134 YHLQKQVCELQAQLAKTQ 151
Cdd:pfam03195  81 SALQQQLAQLQAELALAQ 98
 
Name Accession Description Interval E-value
LOB pfam03195
Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a ...
 54-151 4.94e-63

Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a plant-specific protein of unknown function that is expressed at the adaxial base of initiating lateral organs. The N-terminal of the LOB protein contains an approximately 100-amino acid conserved domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins as well as in proteins from a variety of other plant species. The LOB domain contains conserved blocks of amino acids that identify the LOB domain (LBD) gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is the defining feature of the LOB domain, is present in all LBD proteins.


Pssm-ID: 460843  Cd Length: 99  Bit Score: 191.55  E-value: 4.94e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685285912   54 PCAACKILRRRCADKCVLAPYFPPTDPAKFIIAHRVFGASNIIKFLQELPESQRTDTVNSMVYEAGARMRDPVYGCAGAI 133
Cdd:pfam03195   1 PCAACKYLRRKCTPDCILAPYFPADQPEKFANVHKVFGASNVIKLLKELPPEQRADAVKSLIYEANARLRDPVYGCVGII 80

                          90
                  ....*....|....*...
gi 685285912  134 YHLQKQVCELQAQLAKTQ 151
Cdd:pfam03195  81 SALQQQLAQLQAELALAQ 98
 
Name Accession Description Interval E-value
LOB pfam03195
Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a ...
 54-151 4.94e-63

Lateral organ boundaries (LOB) domain; The lateral organ boundaries (LOB) gene encodes a plant-specific protein of unknown function that is expressed at the adaxial base of initiating lateral organs. The N-terminal of the LOB protein contains an approximately 100-amino acid conserved domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins as well as in proteins from a variety of other plant species. The LOB domain contains conserved blocks of amino acids that identify the LOB domain (LBD) gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is the defining feature of the LOB domain, is present in all LBD proteins.


Pssm-ID: 460843  Cd Length: 99  Bit Score: 191.55  E-value: 4.94e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 685285912   54 PCAACKILRRRCADKCVLAPYFPPTDPAKFIIAHRVFGASNIIKFLQELPESQRTDTVNSMVYEAGARMRDPVYGCAGAI 133
Cdd:pfam03195   1 PCAACKYLRRKCTPDCILAPYFPADQPEKFANVHKVFGASNVIKLLKELPPEQRADAVKSLIYEANARLRDPVYGCVGII 80

                          90
                  ....*....|....*...
gi 685285912  134 YHLQKQVCELQAQLAKTQ 151
Cdd:pfam03195  81 SALQQQLAQLQAELALAQ 98
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH