NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1079373540|ref|XP_009130119|]
View 

protein TRANSPARENT TESTA 16-like isoform X2 [Brassica rapa]

Protein Classification

MADS-box domain-containing protein( domain architecture ID 10083661)

MADS-box domain-containing protein with a K-box coiled-coil region; the MADS-box domain (MCM1, AGAMOUS, DEFICIENS, and SRF, serum response factor) is a conserved DNA-binding/dimerization region present in a variety of transcription factors from three eukaryotic kingdoms, plants, animals, and fungi

Gene Ontology:  GO:0003700
PubMed:  29802068

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MADS_MEF2_like cd00265
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ...
 16-93 1.18e-42

MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.


:

Pssm-ID: 238165 [Multi-domain]  Cd Length: 77  Bit Score: 139.61  E-value: 1.18e-42
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1079373540  16 GRGKIEIKKIENRTARQVTFSKRRSGVIKKAHELSVLCDAHIGLIVFSATGKLYQHCTEPltMPQLIDRYLQTNGLRL 93
Cdd:cd00265     1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSL 76
K-box pfam01486
K-box region; The K-box region is commonly found associated with SRF-type transcription ...
 95-185 8.93e-18

K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.


:

Pssm-ID: 460228 [Multi-domain]  Cd Length: 91  Bit Score: 75.58  E-value: 8.93e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079373540  95 DPNDNREEFCHEIEVLRRETCKLELRQRLYRGHGLASIPPHELDGLEQQLEHSVLKIRQRKNELMQQQLENLSRKRRMLE 174
Cdd:pfam01486   1 SEENEQENWQQEAAKLKKEIENLQRSQRQLLGEDLSSLSLKELQQLEQQLEKSLKRIRSRKNQLLLEQIEELKKKERILQ 80

                          90
                  ....*....|.
gi 1079373540 175 DDNNNMYRWLH 185
Cdd:pfam01486  81 EENKELRKKLE 91
 
Name Accession Description Interval E-value
MADS_MEF2_like cd00265
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ...
 16-93 1.18e-42

MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.


Pssm-ID: 238165 [Multi-domain]  Cd Length: 77  Bit Score: 139.61  E-value: 1.18e-42
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1079373540  16 GRGKIEIKKIENRTARQVTFSKRRSGVIKKAHELSVLCDAHIGLIVFSATGKLYQHCTEPltMPQLIDRYLQTNGLRL 93
Cdd:cd00265     1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSL 76
MADS smart00432
MADS domain;
16-73 3.56e-34

MADS domain;


Pssm-ID: 197721 [Multi-domain]  Cd Length: 59  Bit Score: 117.27  E-value: 3.56e-34
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1079373540   16 GRGKIEIKKIENRTARQVTFSKRRSGVIKKAHELSVLCDAHIGLIVFSATGKLYQHCT 73
Cdd:smart00432   1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58
SRF-TF pfam00319
SRF-type transcription factor (DNA-binding and dimerization domain);
24-71 7.65e-26

SRF-type transcription factor (DNA-binding and dimerization domain);


Pssm-ID: 459760 [Multi-domain]  Cd Length: 48  Bit Score: 95.57  E-value: 7.65e-26
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1079373540  24 KIENRTARQVTFSKRRSGVIKKAHELSVLCDAHIGLIVFSATGKLYQH 71
Cdd:pfam00319   1 RIENKRARQVTFSKRRKGLFKKASELSVLCGAEVAVIVFSPTGKLYTF 48
K-box pfam01486
K-box region; The K-box region is commonly found associated with SRF-type transcription ...
 95-185 8.93e-18

K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.


Pssm-ID: 460228 [Multi-domain]  Cd Length: 91  Bit Score: 75.58  E-value: 8.93e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079373540  95 DPNDNREEFCHEIEVLRRETCKLELRQRLYRGHGLASIPPHELDGLEQQLEHSVLKIRQRKNELMQQQLENLSRKRRMLE 174
Cdd:pfam01486   1 SEENEQENWQQEAAKLKKEIENLQRSQRQLLGEDLSSLSLKELQQLEQQLEKSLKRIRSRKNQLLLEQIEELKKKERILQ 80

                          90
                  ....*....|.
gi 1079373540 175 DDNNNMYRWLH 185
Cdd:pfam01486  81 EENKELRKKLE 91
ARG80 COG5068
Regulator of arginine metabolism and related MADS box-containing transcription factors ...
 15-76 8.69e-12

Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription];


Pssm-ID: 227400 [Multi-domain]  Cd Length: 412  Bit Score: 64.27  E-value: 8.69e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1079373540  15 MGRGKIEIKKIENRTARQVTFSKRRSGVIKKAHELSVLCDAHIGLIVFSATGKLYQHCTEPL 76
Cdd:COG5068    81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKL 142
 
Name Accession Description Interval E-value
MADS_MEF2_like cd00265
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ...
 16-93 1.18e-42

MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.


Pssm-ID: 238165 [Multi-domain]  Cd Length: 77  Bit Score: 139.61  E-value: 1.18e-42
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1079373540  16 GRGKIEIKKIENRTARQVTFSKRRSGVIKKAHELSVLCDAHIGLIVFSATGKLYQHCTEPltMPQLIDRYLQTNGLRL 93
Cdd:cd00265     1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSL 76
MADS smart00432
MADS domain;
16-73 3.56e-34

MADS domain;


Pssm-ID: 197721 [Multi-domain]  Cd Length: 59  Bit Score: 117.27  E-value: 3.56e-34
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1079373540   16 GRGKIEIKKIENRTARQVTFSKRRSGVIKKAHELSVLCDAHIGLIVFSATGKLYQHCT 73
Cdd:smart00432   1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58
MADS cd00120
MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic ...
 16-74 1.66e-32

MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.


Pssm-ID: 238067 [Multi-domain]  Cd Length: 59  Bit Score: 112.99  E-value: 1.66e-32
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1079373540  16 GRGKIEIKKIENRTARQVTFSKRRSGVIKKAHELSVLCDAHIGLIVFSATGKLYQHCTE 74
Cdd:cd00120     1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59
MADS_SRF_like cd00266
SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) ...
 16-69 5.73e-27

SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.


Pssm-ID: 238166 [Multi-domain]  Cd Length: 83  Bit Score: 99.64  E-value: 5.73e-27
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1079373540  16 GRGKIEIKKIENRTARQVTFSKRRSGVIKKAHELSVLCDAHIGLIVFSATGKLY 69
Cdd:cd00266     1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLY 54
SRF-TF pfam00319
SRF-type transcription factor (DNA-binding and dimerization domain);
24-71 7.65e-26

SRF-type transcription factor (DNA-binding and dimerization domain);


Pssm-ID: 459760 [Multi-domain]  Cd Length: 48  Bit Score: 95.57  E-value: 7.65e-26
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1079373540  24 KIENRTARQVTFSKRRSGVIKKAHELSVLCDAHIGLIVFSATGKLYQH 71
Cdd:pfam00319   1 RIENKRARQVTFSKRRKGLFKKASELSVLCGAEVAVIVFSPTGKLYTF 48
K-box pfam01486
K-box region; The K-box region is commonly found associated with SRF-type transcription ...
 95-185 8.93e-18

K-box region; The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation.


Pssm-ID: 460228 [Multi-domain]  Cd Length: 91  Bit Score: 75.58  E-value: 8.93e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079373540  95 DPNDNREEFCHEIEVLRRETCKLELRQRLYRGHGLASIPPHELDGLEQQLEHSVLKIRQRKNELMQQQLENLSRKRRMLE 174
Cdd:pfam01486   1 SEENEQENWQQEAAKLKKEIENLQRSQRQLLGEDLSSLSLKELQQLEQQLEKSLKRIRSRKNQLLLEQIEELKKKERILQ 80

                          90
                  ....*....|.
gi 1079373540 175 DDNNNMYRWLH 185
Cdd:pfam01486  81 EENKELRKKLE 91
ARG80 COG5068
Regulator of arginine metabolism and related MADS box-containing transcription factors ...
 15-76 8.69e-12

Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription];


Pssm-ID: 227400 [Multi-domain]  Cd Length: 412  Bit Score: 64.27  E-value: 8.69e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1079373540  15 MGRGKIEIKKIENRTARQVTFSKRRSGVIKKAHELSVLCDAHIGLIVFSATGKLYQHCTEPL 76
Cdd:COG5068    81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKL 142
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH