|
Name |
Accession |
Description |
Interval |
E-value |
| FkpA |
COG0545 |
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ... |
42-145 |
1.70e-48 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440311 [Multi-domain] Cd Length: 104 Bit Score: 163.81 E-value: 1.70e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 42 LKKKLVKEGEGwETPDTGDEVEVHYTGTLIDGAQFDSSRDRGTPFKFKLGEGQVIKGWDEGIRTMKKGENAIFTIPPELA 121
Cdd:COG0545 1 LQYKVLKEGTG-AKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELA 79
|
90 100
....*....|....*....|....
gi 2316562127 122 YGESGSPPTIPPNATLQFDVELLS 145
Cdd:COG0545 80 YGERGAGGVIPPNSTLVFEVELLD 103
|
|
| FKBP_C |
pfam00254 |
FKBP-type peptidyl-prolyl cis-trans isomerase; |
52-144 |
3.61e-43 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase;
Pssm-ID: 459735 Cd Length: 94 Bit Score: 149.27 E-value: 3.61e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 52 GWETPDTGDEVEVHYTGTLIDGAQFDSSRDRGTPFKFKLGEGQVIKGWDEGIRTMKKGENAIFTIPPELAYGESGS-PPT 130
Cdd:pfam00254 1 GPEKAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPV 80
|
90
....*....|....
gi 2316562127 131 IPPNATLQFDVELL 144
Cdd:pfam00254 81 IPPNATLVFEVELL 94
|
|
| PRK10902 |
PRK10902 |
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional |
39-145 |
1.97e-27 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Pssm-ID: 236791 [Multi-domain] Cd Length: 269 Bit Score: 111.39 E-value: 1.97e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 39 KNGLKKKLVKEGEGwETPDTGDEVEVHYTGTLIDGAQFDSSRDRGTPFKFKLgeGQVIKGWDEGIRTMKKGENAIFTIPP 118
Cdd:PRK10902 145 STGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIPP 221
|
90 100
....*....|....*....|....*..
gi 2316562127 119 ELAYGESGSpPTIPPNATLQFDVELLS 145
Cdd:PRK10902 222 ELAYGKAGV-PGIPANSTLVFDVELLD 247
|
|
| FKBP_C |
pfam00254 |
FKBP-type peptidyl-prolyl cis-trans isomerase; |
285-380 |
1.32e-24 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase;
Pssm-ID: 459735 Cd Length: 94 Bit Score: 98.04 E-value: 1.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 285 GYEQPNEGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKIDEEQVVEGLDLAVRKMKKGEIASVTIHPQYAFGSSDSSQDl 364
Cdd:pfam00254 1 GPEKAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLAGP- 79
|
90
....*....|....*.
gi 2316562127 365 aVVPANSIVHYEVELV 380
Cdd:pfam00254 80 -VIPPNATLVFEVELL 94
|
|
| FkpA |
COG0545 |
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ... |
278-382 |
9.68e-23 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440311 [Multi-domain] Cd Length: 104 Bit Score: 92.94 E-value: 9.68e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 278 KTQKEGEGyEQPNEGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKIDEEQVVEGLDLAVRKMKKGEIASVTIHPQYAFGS 357
Cdd:COG0545 4 KVLKEGTG-AKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGE 82
|
90 100
....*....|....*....|....*
gi 2316562127 358 SDSSQdlaVVPANSIVHYEVELVSF 382
Cdd:COG0545 83 RGAGG---VIPPNSTLVFEVELLDV 104
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
408-536 |
2.31e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 73.12 E-value: 2.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 408 GNVLFKAGKYERASRRYEKAVRyieydtsfsdEEKQQSKALkisCNLnnAACKLKVKDYKQAEKLCTKVLELDSRNVKAL 487
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALE----------LDPDDAEAL---YNL--GLAYLRLGRYEEALADYEQALELDPDDAEAL 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2316562127 488 YRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQLKEKVKEYNK 536
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
394-546 |
5.46e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 55.76 E-value: 5.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 394 AEEKIEAAGKKKEEGNVLFKAGKYERASRRYEKAVRYIEYDTSFSdeekqqskalkiscnlNNAACKLKVKDYKQAEKLC 473
Cdd:TIGR00990 120 EEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYS----------------NRAACHNALGDWEKVVEDT 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 474 TKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIkKALEIDPDNRDVKIE-----------YRQLKEKVKEYNKR--DAQ 540
Cdd:TIGR00990 184 TAALELDPDYSKALNRRANAYDGLGKYADALLDL-TASCIIDGFRNEQSAqaverllkkfaESKAKEILETKPENlpSVT 262
|
....*.
gi 2316562127 541 FYGNIF 546
Cdd:TIGR00990 263 FVGNYL 268
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
464-521 |
8.69e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 46.42 E-value: 8.69e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2316562127 464 KDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVK 521
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
454-521 |
3.44e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 49.16 E-value: 3.44e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2316562127 454 LNNAACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVK 521
Cdd:cd24142 4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
|
|
| PRK10902 |
PRK10902 |
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional |
275-406 |
5.08e-06 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Pssm-ID: 236791 [Multi-domain] Cd Length: 269 Bit Score: 48.22 E-value: 5.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 275 VLKKTQKEGEGyEQPNEGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKIDeeQVVEGLDLAVRKMKKGEIASVTIHPQYA 354
Cdd:PRK10902 148 LLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELA 224
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2316562127 355 FGSSDssqdLAVVPANSIVHYEVELVSFVKEKeswdlnKAEEKIEAAGKKKE 406
Cdd:PRK10902 225 YGKAG----VPGIPANSTLVFDVELLDVKPAP------KADAKPEADAKAAD 266
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
484-517 |
9.23e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.43 E-value: 9.23e-06
10 20 30
....*....|....*....|....*....|....
gi 2316562127 484 VKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDN 517
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
465-515 |
2.43e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 40.54 E-value: 2.43e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 2316562127 465 DYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDP 515
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FkpA |
COG0545 |
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ... |
42-145 |
1.70e-48 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440311 [Multi-domain] Cd Length: 104 Bit Score: 163.81 E-value: 1.70e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 42 LKKKLVKEGEGwETPDTGDEVEVHYTGTLIDGAQFDSSRDRGTPFKFKLGEGQVIKGWDEGIRTMKKGENAIFTIPPELA 121
Cdd:COG0545 1 LQYKVLKEGTG-AKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELA 79
|
90 100
....*....|....*....|....
gi 2316562127 122 YGESGSPPTIPPNATLQFDVELLS 145
Cdd:COG0545 80 YGERGAGGVIPPNSTLVFEVELLD 103
|
|
| FKBP_C |
pfam00254 |
FKBP-type peptidyl-prolyl cis-trans isomerase; |
52-144 |
3.61e-43 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase;
Pssm-ID: 459735 Cd Length: 94 Bit Score: 149.27 E-value: 3.61e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 52 GWETPDTGDEVEVHYTGTLIDGAQFDSSRDRGTPFKFKLGEGQVIKGWDEGIRTMKKGENAIFTIPPELAYGESGS-PPT 130
Cdd:pfam00254 1 GPEKAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLaGPV 80
|
90
....*....|....
gi 2316562127 131 IPPNATLQFDVELL 144
Cdd:pfam00254 81 IPPNATLVFEVELL 94
|
|
| PRK10902 |
PRK10902 |
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional |
39-145 |
1.97e-27 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Pssm-ID: 236791 [Multi-domain] Cd Length: 269 Bit Score: 111.39 E-value: 1.97e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 39 KNGLKKKLVKEGEGwETPDTGDEVEVHYTGTLIDGAQFDSSRDRGTPFKFKLgeGQVIKGWDEGIRTMKKGENAIFTIPP 118
Cdd:PRK10902 145 STGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIPP 221
|
90 100
....*....|....*....|....*..
gi 2316562127 119 ELAYGESGSpPTIPPNATLQFDVELLS 145
Cdd:PRK10902 222 ELAYGKAGV-PGIPANSTLVFDVELLD 247
|
|
| PRK11570 |
PRK11570 |
peptidyl-prolyl cis-trans isomerase; Provisional |
39-144 |
4.47e-25 |
|
peptidyl-prolyl cis-trans isomerase; Provisional
Pssm-ID: 183207 [Multi-domain] Cd Length: 206 Bit Score: 102.95 E-value: 4.47e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 39 KNGLKKKLVKEGEGwETPDTGDEVEVHYTGTLIDGAQFDSSRDRGTPFKFKLGegQVIKGWDEGIRTMKKGENAIFTIPP 118
Cdd:PRK11570 101 ESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTIPH 177
|
90 100
....*....|....*....|....*.
gi 2316562127 119 ELAYGESGSPPTIPPNATLQFDVELL 144
Cdd:PRK11570 178 ELAYGERGAGASIPPFSTLVFEVELL 203
|
|
| FKBP_C |
pfam00254 |
FKBP-type peptidyl-prolyl cis-trans isomerase; |
285-380 |
1.32e-24 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase;
Pssm-ID: 459735 Cd Length: 94 Bit Score: 98.04 E-value: 1.32e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 285 GYEQPNEGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKIDEEQVVEGLDLAVRKMKKGEIASVTIHPQYAFGSSDSSQDl 364
Cdd:pfam00254 1 GPEKAKKGDRVTVHYTGTLEDGTVFDSSYDRGKPFEFTLGSGQVIPGWDEGLVGMKVGEKRKLTIPPELAYGEEGLAGP- 79
|
90
....*....|....*.
gi 2316562127 365 aVVPANSIVHYEVELV 380
Cdd:pfam00254 80 -VIPPNATLVFEVELL 94
|
|
| FkpA |
COG0545 |
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein ... |
278-382 |
9.68e-23 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440311 [Multi-domain] Cd Length: 104 Bit Score: 92.94 E-value: 9.68e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 278 KTQKEGEGyEQPNEGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKIDEEQVVEGLDLAVRKMKKGEIASVTIHPQYAFGS 357
Cdd:COG0545 4 KVLKEGTG-AKPKAGDTVTVHYTGTLLDGTVFDSSYDRGEPATFPLGVGQVIPGWDEGLQGMKVGGKRRLVIPPELAYGE 82
|
90 100
....*....|....*....|....*
gi 2316562127 358 SDSSQdlaVVPANSIVHYEVELVSF 382
Cdd:COG0545 83 RGAGG---VIPPNSTLVFEVELLDV 104
|
|
| SlpA |
COG1047 |
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ... |
59-124 |
9.21e-16 |
|
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440668 [Multi-domain] Cd Length: 138 Bit Score: 74.37 E-value: 9.21e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2316562127 59 GDEVEVHYTGTLIDGAQFDSSRDRGtPFKFKLGEGQVIKGWDEGIRTMKKGENAIFTIPPELAYGE 124
Cdd:COG1047 4 GDVVTLHYTLKLEDGEVFDSTFEGE-PLEFLHGAGQLIPGLEEALEGMEVGDKKTVTLPPEEAYGE 68
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
408-536 |
2.31e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 73.12 E-value: 2.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 408 GNVLFKAGKYERASRRYEKAVRyieydtsfsdEEKQQSKALkisCNLnnAACKLKVKDYKQAEKLCTKVLELDSRNVKAL 487
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALE----------LDPDDAEAL---YNL--GLAYLRLGRYEEALADYEQALELDPDDAEAL 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 2316562127 488 YRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQLKEKVKEYNK 536
Cdd:COG0457 80 NNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDE 128
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
390-536 |
3.35e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.06 E-value: 3.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 390 DLNKAEEKIEAAGKKKEE--------GNVLFKAGKYERASRRYEKAVryieydtsfsDEEKQQSKALKiscNLnnAACKL 461
Cdd:COG2956 57 EYDRAIRIHQKLLERDPDraeallelAQDYLKAGLLDRAEELLEKLL----------ELDPDDAEALR---LL--AEIYE 121
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2316562127 462 KVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQLKEKVKEYNK 536
Cdd:COG2956 122 QEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEE 196
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
408-529 |
3.70e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 63.87 E-value: 3.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 408 GNVLFKAGKYERASRRYEKAVRYieydtsfsDEEKQQSKALKiscnlnnAACKLKVKDYKQAEKLCTKVLELDSRNVKAL 487
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRL--------DPDNADALLDL-------AEALLAAGDTEEAEELLERALALDPDNPEAL 88
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2316562127 488 YRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQLKE 529
Cdd:COG4235 89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
390-517 |
8.29e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.90 E-value: 8.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 390 DLNKAEEKIEAAGKKKEE--------GNVLFKAGKYERASRRYEKAVryieydtsfsdeeKQQSKALKISCNLnnAACKL 461
Cdd:COG4783 19 DYDEAEALLEKALELDPDnpeafallGEILLQLGDLDEAIVLLHEAL-------------ELDPDEPEARLNL--GLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2316562127 462 KVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDN 517
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
389-515 |
1.13e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.06 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 389 WDLNKAEEKIEAAGKKKEEGNVLFKAGKYERASRRYEKAVRYieydtsfsdeEKQQSKALkiscnLNNAACKLKVKDYKQ 468
Cdd:COG5010 42 LAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL----------DPNNPELY-----YNLALLYSRSGDKDE 106
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2316562127 469 AEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDP 515
Cdd:COG5010 107 AKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
457-558 |
4.81e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 4.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 457 AACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQLKEKVKEYNK 536
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90
|
90 100 110
....*....|....*....|....*....|....*...
gi 2316562127 537 -------------RDAQFY---GNIFAKMNKLEHAKSA 558
Cdd:COG4783 91 alallekalkldpEHPEAYlrlARAYRALGRPDEAIAA 128
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
410-519 |
1.13e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 58.26 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 410 VLFKAGKYERASRRYEKAvryIEYDTSFSDeekqqskalkISCNLNNAACKLKvkDYKQAEKLcTKVLELDSRNVKALYR 489
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKA---LELDPDNAD----------ALNNLGLLLLEQG--RYDEAIAL-EKALKLDPNNAEALLN 64
|
90 100 110
....*....|....*....|....*....|
gi 2316562127 490 RAQAYIQLVDLDLAEQDIKKALEIDPDNRD 519
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSALR 94
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
406-558 |
2.05e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 61.08 E-value: 2.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 406 EEGNVLFKAGKYERASRRYEKAvryIEYDTSFSDEekqqskalkiscnLNN-AACKLKVKDYKQAEKLCTKVLELDSRNV 484
Cdd:COG4785 78 ERGVAYDSLGDYDLAIADFDQA---LELDPDLAEA-------------YNNrGLAYLLLGDYDAALEDFDRALELDPDYA 141
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2316562127 485 KALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKI-EY-RQLKEKVKEYNKRDAQFYGNIFAKMNKLEHAKSA 558
Cdd:COG4785 142 YAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALwLYlAERKLDPEKALALLLEDWATAYLLQGDTEEAREL 217
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
408-520 |
2.75e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.09 E-value: 2.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 408 GNVLFKAGKYERASRRYEKAvryIEYDTSFSDeekqqskalkISCNLNNAACKLKvkDYKQAEKLCTKVLELDSRNVKAL 487
Cdd:COG3914 119 GNLLLALGRLEEALAALRRA---LALNPDFAE----------AYLNLGEALRRLG--RLEEAIAALRRALELDPDNAEAL 183
|
90 100 110
....*....|....*....|....*....|...
gi 2316562127 488 YRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDV 520
Cdd:COG3914 184 NNLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
390-536 |
3.25e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 61.28 E-value: 3.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 390 DLNKAEEKIEAA-GKKKEEGNVLFKAGKYERASRRYEKAVRYIEydtsfsDEEKQQSKALKISCNLnnAACKLKVKDYKQ 468
Cdd:COG2956 91 LLDRAEELLEKLlELDPDDAEALRLLAEIYEQEGDWEKAIEVLE------RLLKLGPENAHAYCEL--AELYLEQGDYDE 162
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2316562127 469 AEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQLKEKVKEYNK 536
Cdd:COG2956 163 AIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
406-541 |
3.48e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.28 E-value: 3.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 406 EEGNVLFKAGKYERASRRYEKAVryieydtsfsDEEKQQSKALkiscnLNNAACKLKVKDYKQAEKLCTKVLELDSRNVK 485
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKAL----------ELDPDNPEAF-----ALLGEILLQLGDLDEAIVLLHEALELDPDEPE 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2316562127 486 ALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQLKEKVKEYNKRDAQF 541
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
410-558 |
1.06e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 59.74 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 410 VLFKAGKYERA-----SRRYEKAVRYieydtsFSDEEKQQSKALKISCNLnnAACKLKVKDYKQAEKLCTKVLELDSRNV 484
Cdd:COG2956 5 VAAALGWYFKGlnyllNGQPDKAIDL------LEEALELDPETVEAHLAL--GNLYRRRGEYDRAIRIHQKLLERDPDRA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 485 KALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIE----YRQLK---------EKVKEYNKRDAQFY---GNIFAK 548
Cdd:COG2956 77 EALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLlaeiYEQEGdwekaievlERLLKLGPENAHAYcelAELYLE 156
|
170
....*....|
gi 2316562127 549 MNKLEHAKSA 558
Cdd:COG2956 157 QGDYDEAIEA 166
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
458-536 |
1.63e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.89 E-value: 1.63e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2316562127 458 ACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQLKEKVKEYNK 536
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
390-536 |
2.84e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.20 E-value: 2.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 390 DLNKAEEKIEAAGKKKEE--------GNVLFKAGKYERASRRYEKAVryieydtsfsdeeKQQSKALKISCNLnnAACKL 461
Cdd:COG2956 125 DWEKAIEVLERLLKLGPEnahaycelAELYLEQGDYDEAIEALEKAL-------------KLDPDCARALLLL--AELYL 189
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2316562127 462 KVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNrDVKIEYRQLKEKVKEYNK 536
Cdd:COG2956 190 EQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD-DLLLALADLLERKEGLEA 263
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
408-540 |
3.72e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.71 E-value: 3.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 408 GNVLFKAGKYERASRRYEKAvryIEYDTSFSDeekqqskalkiscNLNN-AACKLKVKDYKQAEKLCTKVLELDSRNVKA 486
Cdd:COG0457 83 GLALQALGRYEEALEDYDKA---LELDPDDAE-------------ALYNlGLALLELGRYDEAIEAYERALELDPDDADA 146
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2316562127 487 LYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQLKEKVKEYNKRDAQ 540
Cdd:COG0457 147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALL 200
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
394-527 |
5.12e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.85 E-value: 5.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 394 AEEKIEAAGKKKEEGNVLFKAGKYERASRRYEKAVRYieydtsfsdeekqQSKALKISCNLNNAAckLKVKDYKQAEKLC 473
Cdd:COG3914 71 AAALLLLAALLELAALLLQALGRYEEALALYRRALAL-------------NPDNAEALFNLGNLL--LALGRLEEALAAL 135
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2316562127 474 TKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVkieYRQL 527
Cdd:COG3914 136 RRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEA---LNNL 186
|
|
| SlpA |
COG1047 |
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein ... |
290-356 |
5.28e-09 |
|
Peptidyl-prolyl cis-trans isomerase, FKBP type [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440668 [Multi-domain] Cd Length: 138 Bit Score: 54.72 E-value: 5.28e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2316562127 290 NEGAVVQVKLTGKLADGTIFTKkGDDEKPFEFKIDEEQVVEGLDLAVRKMKKGEIASVTIHPQYAFG 356
Cdd:COG1047 2 EKGDVVTLHYTLKLEDGEVFDS-TFEGEPLEFLHGAGQLIPGLEEALEGMEVGDKKTVTLPPEEAYG 67
|
|
| PRK15095 |
PRK15095 |
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional |
62-131 |
1.11e-08 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Pssm-ID: 237908 [Multi-domain] Cd Length: 156 Bit Score: 54.33 E-value: 1.11e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 62 VEVHYTGTLIDGAQFDSSRDRGTPFKFKLGEGQVIKGWDEGIRTMKKGENAIFTIPPELAYGESgSPPTI 131
Cdd:PRK15095 11 VLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP-SPDLI 79
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
381-517 |
3.75e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 54.15 E-value: 3.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 381 SFVKEKESWDLNKAEEKIEAAGKKKEEG------NVLFKAGKYERASRRYEKAVRYIEYDTSFSDEEKQQSKalkiscnL 454
Cdd:COG4785 5 ALALLLALALAAAAASKAAILLAALLFAavlalaIALADLALALAAAALAAAALAAERIDRALALPDLAQLY-------Y 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2316562127 455 NNAACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDN 517
Cdd:COG4785 78 ERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY 140
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
394-546 |
5.46e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 55.76 E-value: 5.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 394 AEEKIEAAGKKKEEGNVLFKAGKYERASRRYEKAVRYIEYDTSFSdeekqqskalkiscnlNNAACKLKVKDYKQAEKLC 473
Cdd:TIGR00990 120 EEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYS----------------NRAACHNALGDWEKVVEDT 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 474 TKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIkKALEIDPDNRDVKIE-----------YRQLKEKVKEYNKR--DAQ 540
Cdd:TIGR00990 184 TAALELDPDYSKALNRRANAYDGLGKYADALLDL-TASCIIDGFRNEQSAqaverllkkfaESKAKEILETKPENlpSVT 262
|
....*.
gi 2316562127 541 FYGNIF 546
Cdd:TIGR00990 263 FVGNYL 268
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
468-524 |
6.01e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 6.01e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2316562127 468 QAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEY 524
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL 57
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
464-521 |
8.69e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 46.42 E-value: 8.69e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2316562127 464 KDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVK 521
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
484-517 |
1.01e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 45.10 E-value: 1.01e-06
10 20 30
....*....|....*....|....*....|....
gi 2316562127 484 VKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDN 517
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
477-555 |
2.32e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 49.23 E-value: 2.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 477 LELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVK----IEYRQLK---------EKVKEYNKRDAQFY- 542
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALynlgLAYLRLGryeealadyEQALELDPDDAEALn 80
|
90
....*....|....*
gi 2316562127 543 --GNIFAKMNKLEHA 555
Cdd:COG0457 81 nlGLALQALGRYEEA 95
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
454-521 |
3.44e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 49.16 E-value: 3.44e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2316562127 454 LNNAACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVK 521
Cdd:cd24142 4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
|
|
| PRK10902 |
PRK10902 |
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional |
275-406 |
5.08e-06 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Pssm-ID: 236791 [Multi-domain] Cd Length: 269 Bit Score: 48.22 E-value: 5.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 275 VLKKTQKEGEGyEQPNEGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKIDeeQVVEGLDLAVRKMKKGEIASVTIHPQYA 354
Cdd:PRK10902 148 LLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVIPPELA 224
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2316562127 355 FGSSDssqdLAVVPANSIVHYEVELVSFVKEKeswdlnKAEEKIEAAGKKKE 406
Cdd:PRK10902 225 YGKAG----VPGIPANSTLVFDVELLDVKPAP------KADAKPEADAKAAD 266
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
484-517 |
9.23e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.43 E-value: 9.23e-06
10 20 30
....*....|....*....|....*....|....
gi 2316562127 484 VKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDN 517
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
461-527 |
3.69e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.62 E-value: 3.69e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2316562127 461 LKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQL 527
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
392-542 |
9.65e-05 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 44.10 E-value: 9.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 392 NKAEEKIEAAGKKKEEGNVLFKAGKYERASRRYEKAVRYIEYdtsfsDEEKQQSKalkiscnLNNAACKLKVKDYKQAEK 471
Cdd:COG4105 23 FKKALKSWDAEELYEEAKEALEKGDYEKAIKLFEELEPRYPG-----SPYAEQAQ-------LMLAYAYYKQGDYEEAIA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 472 LCTKVLEL--DSRNVK-ALYRRAQAY---IQLVDLDLaeQDIKKALE-----ID--PDNR---DVKIEYRQLKEKV--KE 533
Cdd:COG4105 91 AADRFIKLypNSPNADyAYYLRGLSYyeqSPDSDRDQ--TSTRKAIEafqelINryPDSEyaeDAKKRIDELRDKLarKE 168
|
....*....
gi 2316562127 534 YNKrdAQFY 542
Cdd:COG4105 169 LEV--ARYY 175
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
414-520 |
2.22e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.98 E-value: 2.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 414 AGKYERASRRYEKAVRYIEYDTSFSDEEKQQSKAlkiscnlnNAACKLKVKDYKQAEKLctkvleldSRNVKALYRRAQA 493
Cdd:COG4785 19 ASKAAILLAALLFAAVLALAIALADLALALAAAA--------LAAAALAAERIDRALAL--------PDLAQLYYERGVA 82
|
90 100
....*....|....*....|....*..
gi 2316562127 494 YIQLVDLDLAEQDIKKALEIDPDNRDV 520
Cdd:COG4785 83 YDSLGDYDLAIADFDQALELDPDLAEA 109
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
364-528 |
2.60e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.92 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 364 LAVVPANSIVHYEVELVSFVKEkeswDLNKAEEKIEAAGKKKEE--------GNVLFKAGKYERASRRYEKAVRYIEYDT 435
Cdd:TIGR02917 254 LKKAPNSPLAHYLKALVDFQKK----NYEDARETLQDALKSAPEylpalllaGASEYQLGNLEQAYQYLNQILKYAPNSH 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 436 sfsdeekqqsKALKIScnlnnAACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDP 515
Cdd:TIGR02917 330 ----------QARRLL-----ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP 394
|
170
....*....|...
gi 2316562127 516 DNRDVKIEYRQLK 528
Cdd:TIGR02917 395 ENAAARTQLGISK 407
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
461-558 |
2.80e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.75 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 461 LKVKDYKQAEKLCTKVLEL---DSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVkieyrqlkekvkeynkR 537
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKA----------------P 67
|
90 100
....*....|....*....|..
gi 2316562127 538 DAQFY-GNIFAKMNKLEHAKSA 558
Cdd:COG1729 68 DALLKlGLSYLELGDYDKARAT 89
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
411-529 |
3.86e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 3.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 411 LFKAGKYERASRRYEKAVRyiEYDTSfsdeeKQQSKALkiscnLNNAACKLKVKDYKQAEKLCTKVLELDSRNVK---AL 487
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLK--RYPNS-----PLAPDAL-----YWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdAL 70
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2316562127 488 YRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQLKE 529
Cdd:COG1729 71 LKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARLAR 112
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
484-516 |
5.30e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 37.38 E-value: 5.30e-04
10 20 30
....*....|....*....|....*....|...
gi 2316562127 484 VKALYRRAQAYIQLVDLDLAEQDIKKALEIDPD 516
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
461-517 |
6.89e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.09 E-value: 6.89e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 461 LKVKDYKQAEKLCTKVLELDSR---NVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDN 517
Cdd:pfam13432 8 LRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
383-517 |
1.08e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.99 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 383 VKEKESWDLNKAEEKIEAAGKKkeeGNVLFKAGKYERASRRYEKAvryieydtsfsdeekQQSKALKISCNLNNAACKLK 462
Cdd:TIGR02917 110 LDELPGKTLLDDEGAAELLALR---GLAYLGLGQLELAQKSYEQA---------------LAIDPRSLYAKLGLAQLALA 171
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 2316562127 463 VKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDN 517
Cdd:TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
450-516 |
1.31e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 37.75 E-value: 1.31e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2316562127 450 ISCNLNN-AACKLKVKDYKQAEKLCTKVLELDSRN--------VKALYRRAQAYIQLVDLDLAEQDIKKALEIDPD 516
Cdd:pfam13424 2 VATALNNlAAVLRRLGRYDEALELLEKALEIARRLlgpdhpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
465-515 |
2.43e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 40.54 E-value: 2.43e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 2316562127 465 DYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDP 515
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
484-516 |
2.59e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.58 E-value: 2.59e-03
10 20 30
....*....|....*....|....*....|...
gi 2316562127 484 VKALYRRAQAYIQLVDLDLAEQDIKKALEIDPD 516
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
385-565 |
4.39e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 4.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 385 EKESWDLNKAEEKIEAAGKKKEEGNVLFKAGKYE-RASRRYEKAVRYIEYDTSFSDEEKQQSKALKISCNLNNAA----- 458
Cdd:PTZ00121 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKaEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAeekkk 1432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 459 ---CKLKVKDYKQAEKLCTKVLEldSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRDVKIEYRQLKEKVKEYN 535
Cdd:PTZ00121 1433 adeAKKKAEEAKKADEAKKKAEE--AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK 1510
|
170 180 190
....*....|....*....|....*....|
gi 2316562127 536 KRDaqfygnifaKMNKLEHAKSANSGGKQE 565
Cdd:PTZ00121 1511 KAD---------EAKKAEEAKKADEAKKAE 1531
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
392-517 |
5.13e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 39.58 E-value: 5.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 392 NKAEEKIEAAGKKKEEGNVLFKAGKYERASRRYEKAVRYIEYDTSFSDEEkqQSKALKISCNLNN-----AACKLKVKDY 466
Cdd:TIGR00990 304 SKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD--LSKSIELDPRVTQsyikrASMNLELGDP 381
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2316562127 467 KQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDN 517
Cdd:TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
493-556 |
5.78e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.30 E-value: 5.78e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2316562127 493 AYIQLVDLDLAEQDIKKALEIDPDNRDVKIE----YRQLK--------EKVKEYNKRDAQFY---GNIFAKMNKLEHAK 556
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNlgllLLEQGrydeaialEKALKLDPNNAEALlnlAELLLELGDYDEAL 79
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
481-558 |
6.61e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 37.48 E-value: 6.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2316562127 481 SRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNRD-------VKIEYRQLKEKVKEYNK--------RDAQF-YGN 544
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEafallgeILLQLGDLDEAIVLLHEaleldpdePEARLnLGL 80
|
90
....*....|....
gi 2316562127 545 IFAKMNKLEHAKSA 558
Cdd:COG4783 81 ALLKAGDYDEALAL 94
|
|
| Tig |
COG0544 |
FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, ... |
59-116 |
7.46e-03 |
|
FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440310 [Multi-domain] Cd Length: 424 Bit Score: 38.96 E-value: 7.46e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 2316562127 59 GDEVEVHYTGTlIDGAQFDSSRdrGTPFKFKLGEGQVIKGWDEGIRTMKKGENAIFTI 116
Cdd:COG0544 161 GDRVTIDFEGT-IDGEEFEGGK--AEDYSLELGSGSFIPGFEEQLVGMKAGEEKTFEV 215
|
|
| |
