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Conserved domains on  [gi|578799340|ref|XP_006710787|]
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transmembrane protein 39B isoform X2 [Homo sapiens]

Protein Classification

Tmp39 domain-containing protein( domain architecture ID 10563182)

Tmp39 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tmp39 pfam10271
Putative transmembrane protein; This is a family of conserved proteins found from worms to ...
51-414 0e+00

Putative transmembrane protein; This is a family of conserved proteins found from worms to humans. They are putative transmembrane proteins but the function is unknown.


:

Pssm-ID: 463038  Cd Length: 426  Bit Score: 551.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578799340   51 LSSPPLATQTVVPLQHCKIPELPVQASILFELQLFFCQLIALFVHYINIYKTVWWYPPSHppSHTSLNFHLIDFNLLMVT 130
Cdd:pfam10271   4 LSSPPLALQTVVPLKHCKIPDLPTDGELLFELLLFAYLLIALFVQYINIYKTVWWLPPSH--SHTSLNFHLIDPYLLTFI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578799340  131 TIVLGRRFIGSIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSLIHLFRTYSFLNLLFLCYPFGMYIPFLQLNCD 210
Cdd:pfam10271  82 TILLARRLIWAIVKEVSQAGKASFSQSVILLTVRYAVLTLVGWSLCRTAILLFRTHSVLNLLFLSYPVGVYLPIFGFQLD 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578799340  211 LRKTSLFNHMASMGPREAVSGLA-KSRDYLLTLRETWKQHtrqlYGPDAMPTHACCLSPSLIRSEVEFLKMDFNWRMKEV 289
Cdd:pfam10271 162 FRPTSPLEIIGWRKTRFCVGPLLrKSRDFLTLLRELLKQH----PSQEPLPTHSCTLSPDLIRSEVEYLKLDFNRRIKQV 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578799340  290 LVSSMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAAHLGCWQKVDPALCSNVL 369
Cdd:pfam10271 238 LFNSLLSAYYVAFVPCCFVKSTQYYDMRWSCQHCIVVWLSAFVLLMVHLLPAKYCDLLHRAAAHLGCWQKVDPGPCSNTP 317
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 578799340  370 QHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHVL 414
Cdd:pfam10271 318 QHNWSEETMWPQGVLVKHNKGLYKAVGHYNVAIPSDVSHARFYFL 362
 
Name Accession Description Interval E-value
Tmp39 pfam10271
Putative transmembrane protein; This is a family of conserved proteins found from worms to ...
51-414 0e+00

Putative transmembrane protein; This is a family of conserved proteins found from worms to humans. They are putative transmembrane proteins but the function is unknown.


Pssm-ID: 463038  Cd Length: 426  Bit Score: 551.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578799340   51 LSSPPLATQTVVPLQHCKIPELPVQASILFELQLFFCQLIALFVHYINIYKTVWWYPPSHppSHTSLNFHLIDFNLLMVT 130
Cdd:pfam10271   4 LSSPPLALQTVVPLKHCKIPDLPTDGELLFELLLFAYLLIALFVQYINIYKTVWWLPPSH--SHTSLNFHLIDPYLLTFI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578799340  131 TIVLGRRFIGSIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSLIHLFRTYSFLNLLFLCYPFGMYIPFLQLNCD 210
Cdd:pfam10271  82 TILLARRLIWAIVKEVSQAGKASFSQSVILLTVRYAVLTLVGWSLCRTAILLFRTHSVLNLLFLSYPVGVYLPIFGFQLD 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578799340  211 LRKTSLFNHMASMGPREAVSGLA-KSRDYLLTLRETWKQHtrqlYGPDAMPTHACCLSPSLIRSEVEFLKMDFNWRMKEV 289
Cdd:pfam10271 162 FRPTSPLEIIGWRKTRFCVGPLLrKSRDFLTLLRELLKQH----PSQEPLPTHSCTLSPDLIRSEVEYLKLDFNRRIKQV 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578799340  290 LVSSMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAAHLGCWQKVDPALCSNVL 369
Cdd:pfam10271 238 LFNSLLSAYYVAFVPCCFVKSTQYYDMRWSCQHCIVVWLSAFVLLMVHLLPAKYCDLLHRAAAHLGCWQKVDPGPCSNTP 317
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 578799340  370 QHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHVL 414
Cdd:pfam10271 318 QHNWSEETMWPQGVLVKHNKGLYKAVGHYNVAIPSDVSHARFYFL 362
 
Name Accession Description Interval E-value
Tmp39 pfam10271
Putative transmembrane protein; This is a family of conserved proteins found from worms to ...
51-414 0e+00

Putative transmembrane protein; This is a family of conserved proteins found from worms to humans. They are putative transmembrane proteins but the function is unknown.


Pssm-ID: 463038  Cd Length: 426  Bit Score: 551.64  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578799340   51 LSSPPLATQTVVPLQHCKIPELPVQASILFELQLFFCQLIALFVHYINIYKTVWWYPPSHppSHTSLNFHLIDFNLLMVT 130
Cdd:pfam10271   4 LSSPPLALQTVVPLKHCKIPDLPTDGELLFELLLFAYLLIALFVQYINIYKTVWWLPPSH--SHTSLNFHLIDPYLLTFI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578799340  131 TIVLGRRFIGSIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSLIHLFRTYSFLNLLFLCYPFGMYIPFLQLNCD 210
Cdd:pfam10271  82 TILLARRLIWAIVKEVSQAGKASFSQSVILLTVRYAVLTLVGWSLCRTAILLFRTHSVLNLLFLSYPVGVYLPIFGFQLD 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578799340  211 LRKTSLFNHMASMGPREAVSGLA-KSRDYLLTLRETWKQHtrqlYGPDAMPTHACCLSPSLIRSEVEFLKMDFNWRMKEV 289
Cdd:pfam10271 162 FRPTSPLEIIGWRKTRFCVGPLLrKSRDFLTLLRELLKQH----PSQEPLPTHSCTLSPDLIRSEVEYLKLDFNRRIKQV 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578799340  290 LVSSMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAAHLGCWQKVDPALCSNVL 369
Cdd:pfam10271 238 LFNSLLSAYYVAFVPCCFVKSTQYYDMRWSCQHCIVVWLSAFVLLMVHLLPAKYCDLLHRAAAHLGCWQKVDPGPCSNTP 317
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 578799340  370 QHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHVL 414
Cdd:pfam10271 318 QHNWSEETMWPQGVLVKHNKGLYKAVGHYNVAIPSDVSHARFYFL 362
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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