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Conserved domains on  [gi|571486458|ref|XP_006590349|]
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protein PLANT CADMIUM RESISTANCE 10-like isoform X1 [Glycine max]

Protein Classification

PLAC8 family protein( domain architecture ID 10019361)

PLAC8 family protein such as mammalian cornifelin, Arabidopsis plant cadmium resistance (PCR) proteins, and Zea mays cell number regulator proteins

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
A_thal_Cys_rich TIGR01571
uncharacterized Cys-rich domain; This model describes an uncharacterized domain of about 100 ...
 42-159 1.86e-30

uncharacterized Cys-rich domain; This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.


:

Pssm-ID: 273697  Cd Length: 104  Bit Score: 107.13  E-value: 1.86e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571486458   42 QWSSGICACCDDMQSCCIGCLCPCFLFGKNADFLGSGTflGSCVTHFILWSVVNTACCLltdglfwglpgclVSCYACGY 121
Cdd:TIGR01571   2 NWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFA--GECLCGGLTAIAMSALCGF-------------CGCYTCFI 66

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 571486458  122 RKALRSKYNLPEAPCGDFVTHFCCHPCAICQEYREIRE 159
Cdd:TIGR01571  67 RIKLREKYGIQGAPCDDCLTHLFCCFCALCQEHRELKM 104
 
Name Accession Description Interval E-value
A_thal_Cys_rich TIGR01571
uncharacterized Cys-rich domain; This model describes an uncharacterized domain of about 100 ...
 42-159 1.86e-30

uncharacterized Cys-rich domain; This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.


Pssm-ID: 273697  Cd Length: 104  Bit Score: 107.13  E-value: 1.86e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571486458   42 QWSSGICACCDDMQSCCIGCLCPCFLFGKNADFLGSGTflGSCVTHFILWSVVNTACCLltdglfwglpgclVSCYACGY 121
Cdd:TIGR01571   2 NWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFA--GECLCGGLTAIAMSALCGF-------------CGCYTCFI 66

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 571486458  122 RKALRSKYNLPEAPCGDFVTHFCCHPCAICQEYREIRE 159
Cdd:TIGR01571  67 RIKLREKYGIQGAPCDDCLTHLFCCFCALCQEHRELKM 104
PLAC8 pfam04749
PLAC8 family; This family includes the Placenta-specific gene 8 protein.
 43-156 1.25e-29

PLAC8 family; This family includes the Placenta-specific gene 8 protein.


Pssm-ID: 461417  Cd Length: 99  Bit Score: 104.72  E-value: 1.25e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571486458   43 WSSGICACCDDMQSCCIGCLCPCFLFGKNADFLGSGtflgscvthfilwsvvNTACCLLTDGLFWGLPGCLVSC-YACGY 121
Cdd:pfam04749   1 WSTGLFDCFSDCGTCLLGCCCPCVLFGRNAERLDRG----------------NTSCLLAGFAAFCGLTGCGLGWiYSCLQ 64

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 571486458  122 RKALRSKYNLPEAPCGDFVTHFCCHPCAICQEYRE 156
Cdd:pfam04749  65 RGKIREKYGIEGSPCGDCCVHCCCPCCALCQEYRE 99
 
Name Accession Description Interval E-value
A_thal_Cys_rich TIGR01571
uncharacterized Cys-rich domain; This model describes an uncharacterized domain of about 100 ...
 42-159 1.86e-30

uncharacterized Cys-rich domain; This model describes an uncharacterized domain of about 100 residues. It is common in plants but found also in Homo sapiens, Dictyostelium, and Leishmania; at least 12 distinct members are found in Arabidopsis. Most members of this family contain more than 10 per cent Cys, but no Cys residue is invariant across the family.


Pssm-ID: 273697  Cd Length: 104  Bit Score: 107.13  E-value: 1.86e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571486458   42 QWSSGICACCDDMQSCCIGCLCPCFLFGKNADFLGSGTflGSCVTHFILWSVVNTACCLltdglfwglpgclVSCYACGY 121
Cdd:TIGR01571   2 NWSTGLFDCCEDIRLCLCGLFCPCCLFGQIAETLGTFA--GECLCGGLTAIAMSALCGF-------------CGCYTCFI 66

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 571486458  122 RKALRSKYNLPEAPCGDFVTHFCCHPCAICQEYREIRE 159
Cdd:TIGR01571  67 RIKLREKYGIQGAPCDDCLTHLFCCFCALCQEHRELKM 104
PLAC8 pfam04749
PLAC8 family; This family includes the Placenta-specific gene 8 protein.
 43-156 1.25e-29

PLAC8 family; This family includes the Placenta-specific gene 8 protein.


Pssm-ID: 461417  Cd Length: 99  Bit Score: 104.72  E-value: 1.25e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 571486458   43 WSSGICACCDDMQSCCIGCLCPCFLFGKNADFLGSGtflgscvthfilwsvvNTACCLLTDGLFWGLPGCLVSC-YACGY 121
Cdd:pfam04749   1 WSTGLFDCFSDCGTCLLGCCCPCVLFGRNAERLDRG----------------NTSCLLAGFAAFCGLTGCGLGWiYSCLQ 64

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 571486458  122 RKALRSKYNLPEAPCGDFVTHFCCHPCAICQEYRE 156
Cdd:pfam04749  65 RGKIREKYGIEGSPCGDCCVHCCCPCCALCQEYRE 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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