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Conserved domains on  [gi|571436435|ref|XP_006573759|]
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ethylene-responsive transcription factor ERF027 [Glycine max]

Protein Classification

AP2/ERF family transcription factor( domain architecture ID 1000)

AP2/ERF family transcription factor binds to the GCC-box pathogenesis-related promoter element; similar to Arabidopsis thaliana ethylene-responsive transcription factors and dehydration-responsive element-binding proteins

CATH:  3.30.730.10
Gene Ontology:  GO:0003700|GO:0006355|GO:0003677
PubMed:  15708341
SCOP:  4000937

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AP2 super family cl00033
DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP ...
 15-72 4.11e-13

DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.


The actual alignment was detected with superfamily member smart00380:

Pssm-ID: 444663  Cd Length: 64  Bit Score: 61.13  E-value: 4.11e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 571436435    15 FHGIRCRGR-KWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGDGAVLNLPHS 72
Cdd:smart00380   2 YRGVRQRPWgKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60
 
Name Accession Description Interval E-value
AP2 smart00380
DNA-binding domain in plant proteins such as APETALA2 and EREBPs;
15-72 4.11e-13

DNA-binding domain in plant proteins such as APETALA2 and EREBPs;


Pssm-ID: 197689  Cd Length: 64  Bit Score: 61.13  E-value: 4.11e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 571436435    15 FHGIRCRGR-KWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGDGAVLNLPHS 72
Cdd:smart00380   2 YRGVRQRPWgKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60
AP2 cd00018
DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP ...
 13-72 5.65e-11

DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.


Pssm-ID: 237985  Cd Length: 61  Bit Score: 55.36  E-value: 5.65e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 571436435  13 PLFHGIRCRGR-KWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGDGAVLNLPHS 72
Cdd:cd00018    1 SKYRGVRQRPWgKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61
 
Name Accession Description Interval E-value
AP2 smart00380
DNA-binding domain in plant proteins such as APETALA2 and EREBPs;
15-72 4.11e-13

DNA-binding domain in plant proteins such as APETALA2 and EREBPs;


Pssm-ID: 197689  Cd Length: 64  Bit Score: 61.13  E-value: 4.11e-13
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 571436435    15 FHGIRCRGR-KWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGDGAVLNLPHS 72
Cdd:smart00380   2 YRGVRQRPWgKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60
AP2 cd00018
DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP ...
 13-72 5.65e-11

DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.


Pssm-ID: 237985  Cd Length: 61  Bit Score: 55.36  E-value: 5.65e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 571436435  13 PLFHGIRCRGR-KWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGDGAVLNLPHS 72
Cdd:cd00018    1 SKYRGVRQRPWgKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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