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Conserved domains on  [gi|565444887|ref|XP_006284261|]
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homeobox-leucine zipper protein HAT22 [Capsella rubella]

Protein Classification

homeodomain and HALZ domain-containing protein( domain architecture ID 11267639)

homeodomain and HALZ domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
182-225 2.23e-23

homeobox associated leucin zipper;


:

Pssm-ID: 128634  Cd Length: 44  Bit Score: 89.82  E-value: 2.23e-23
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 565444887   182 KQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHM 225
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 126-180 2.76e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


:

Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 71.13  E-value: 2.76e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 565444887   126 RKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 180
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
 
Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
182-225 2.23e-23

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 89.82  E-value: 2.23e-23
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 565444887   182 KQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHM 225
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 126-180 2.76e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 71.13  E-value: 2.76e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 565444887   126 RKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 180
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Homeodomain pfam00046
Homeodomain;
126-180 5.45e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 70.61  E-value: 5.45e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 565444887  126 RKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 180
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 126-183 5.98e-16

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 70.35  E-value: 5.98e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 565444887 126 RKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 183
Cdd:cd00086    2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
117-183 9.33e-14

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 67.46  E-value: 9.33e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565444887 117 HEDEEGVSARKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 183
Cdd:COG5576   44 KQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
HALZ pfam02183
Homeobox associated leucine zipper;
182-216 7.28e-08

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 47.90  E-value: 7.28e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 565444887  182 KQTEVDCEFLKKCCETLT-------DENRRLQKELQDLKALK 216
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Name Accession Description Interval E-value
HALZ smart00340
homeobox associated leucin zipper;
182-225 2.23e-23

homeobox associated leucin zipper;


Pssm-ID: 128634  Cd Length: 44  Bit Score: 89.82  E-value: 2.23e-23
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 565444887   182 KQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHM 225
Cdd:smart00340   1 KQTEVDCELLKRCCESLTEENRRLQKEVQELRALKLSPPLYMQH 44
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 126-180 2.76e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 71.13  E-value: 2.76e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 565444887   126 RKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 180
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Homeodomain pfam00046
Homeodomain;
126-180 5.45e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 70.61  E-value: 5.45e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 565444887  126 RKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 180
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 126-183 5.98e-16

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 70.35  E-value: 5.98e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 565444887 126 RKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 183
Cdd:cd00086    2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
117-183 9.33e-14

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 67.46  E-value: 9.33e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 565444887 117 HEDEEGVSARKKLRLTKEQSALLEDSFKIHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQ 183
Cdd:COG5576   44 KQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
HALZ pfam02183
Homeobox associated leucine zipper;
182-216 7.28e-08

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 47.90  E-value: 7.28e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 565444887  182 KQTEVDCEFLKKCCETLT-------DENRRLQKELQDLKALK 216
Cdd:pfam02183   1 KQLERDYDVLKASYDALKsdfdslkKENQKLQAELQELKEKL 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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