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Conserved domains on  [gi|564375129|ref|XP_006247759|]
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protein VCF1 isoform X7 [Rattus norvegicus]

Protein Classification

FAM104 domain-containing protein( domain architecture ID 10634213)

FAM104 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAM104 pfam15434
Family 104; This family of proteins is found in eukaryotes. Proteins in this family are ...
 41-169 2.94e-49

Family 104; This family of proteins is found in eukaryotes. Proteins in this family are typically between 113 and 185 amino acids in length. There is a conserved SLQ sequence motif.


:

Pssm-ID: 464715  Cd Length: 109  Bit Score: 154.63  E-value: 2.94e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564375129   41 KRRRNGSDDDNHPPPQTKRSSRNPIFQDSWDTEevpvtknSEGSRLRGNSplwssssdsggsssSSINSPDRASGPESSL 120
Cdd:pfam15434   2 KRRRNGNEEDNHVLPQPKRSSRNTVLQDSWDTE-------SSSSDSGGSS--------------SSINSPDRASGPESSL 60

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 564375129  121 SHIIPGSCPSTPQPMPEQSALCQGPYFHINQTLKEAHFHSLQHRGRPPT 169
Cdd:pfam15434  61 NPIMPGSSPNTPQFSQEQSALCQGPYFHINQILKEAHFHSLQHRGRPPT 109
 
Name Accession Description Interval E-value
FAM104 pfam15434
Family 104; This family of proteins is found in eukaryotes. Proteins in this family are ...
 41-169 2.94e-49

Family 104; This family of proteins is found in eukaryotes. Proteins in this family are typically between 113 and 185 amino acids in length. There is a conserved SLQ sequence motif.


Pssm-ID: 464715  Cd Length: 109  Bit Score: 154.63  E-value: 2.94e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564375129   41 KRRRNGSDDDNHPPPQTKRSSRNPIFQDSWDTEevpvtknSEGSRLRGNSplwssssdsggsssSSINSPDRASGPESSL 120
Cdd:pfam15434   2 KRRRNGNEEDNHVLPQPKRSSRNTVLQDSWDTE-------SSSSDSGGSS--------------SSINSPDRASGPESSL 60

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 564375129  121 SHIIPGSCPSTPQPMPEQSALCQGPYFHINQTLKEAHFHSLQHRGRPPT 169
Cdd:pfam15434  61 NPIMPGSSPNTPQFSQEQSALCQGPYFHINQILKEAHFHSLQHRGRPPT 109
 
Name Accession Description Interval E-value
FAM104 pfam15434
Family 104; This family of proteins is found in eukaryotes. Proteins in this family are ...
 41-169 2.94e-49

Family 104; This family of proteins is found in eukaryotes. Proteins in this family are typically between 113 and 185 amino acids in length. There is a conserved SLQ sequence motif.


Pssm-ID: 464715  Cd Length: 109  Bit Score: 154.63  E-value: 2.94e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564375129   41 KRRRNGSDDDNHPPPQTKRSSRNPIFQDSWDTEevpvtknSEGSRLRGNSplwssssdsggsssSSINSPDRASGPESSL 120
Cdd:pfam15434   2 KRRRNGNEEDNHVLPQPKRSSRNTVLQDSWDTE-------SSSSDSGGSS--------------SSINSPDRASGPESSL 60

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 564375129  121 SHIIPGSCPSTPQPMPEQSALCQGPYFHINQTLKEAHFHSLQHRGRPPT 169
Cdd:pfam15434  61 NPIMPGSSPNTPQFSQEQSALCQGPYFHINQILKEAHFHSLQHRGRPPT 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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