|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
11-317 |
3.83e-20 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 92.68 E-value: 3.83e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 11 EKAELRDLNARLHDYVCRVRELERENQLLEEQLRGRRgeEQLWAEGQ---ARFAEEARGLRAQLDALSWETALAEGERDA 87
Cdd:pfam00038 2 EKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELR--QKKGAEPSrlySLYEKEIEDLRRQLDTLTVERARLQLELDN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 88 LRRELRELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALTVHFR 167
Cdd:pfam00038 80 LRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 168 ARARPAAP-PPRLRELHGSCALLAAESWRESVQLYEDEVRELELA-----------------LRRGQESRREAEEEARRg 229
Cdd:pfam00038 160 MDAARKLDlTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAaarngdalrsakeeiteLRRTIQSLEIELQSLKK- 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 230 aqEAESLQRQALELEQlrvrleeelrrlreEHGLRAEERQRVIDCLEDEKEALTLAMAERLRDYQELVRVKTGLSLEVAT 309
Cdd:pfam00038 239 --QKASLERQLAETEE--------------RYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIAT 302
|
....*...
gi 512981511 310 YRALLEGE 317
Cdd:pfam00038 303 YRKLLEGE 310
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
13-315 |
8.02e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 8.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 13 AELRDLNARLHDYVCRVRELERENQLLEEQLRGRRGEEQLWAEGQARFAEEARGLRAQLDALSWETALAEGERDALRREL 92
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 93 RELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALTVHFRARARP 172
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 173 AAPPPRLRELHGScALLAAESWRESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQALELEQLRVRLEE 252
Cdd:COG1196 392 LRAAAELAAQLEE-LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512981511 253 ELRRLREEHGLRAEERQRvidclEDEKEALTLAMAERLRDYQELVRVKTGLSLEVATYRALLE 315
Cdd:COG1196 471 EAALLEAALAELLEELAE-----AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
5-293 |
1.91e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 5 RLQTGPEKAELRDLNARLHDYVCRVRELERENQLLEEQLRGRRGEEQLWAEGQARFAEEARGLRAQLDALSWETALAEGE 84
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 85 RDALRRELRELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALTv 164
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE- 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 165 hfrararpaapPPRLRELHGSCALLAAE--SWRESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQALE 242
Cdd:TIGR02168 432 -----------EAELKELQAELEELEEEleELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 512981511 243 LEQLRVRLEEELRRLREEHGLraeeRQRVIDCLEDEKE---ALTLAMAERLRDY 293
Cdd:TIGR02168 501 LEGFSEGVKALLKNQSGLSGI----LGVLSELISVDEGyeaAIEAALGGRLQAV 550
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
755-1044 |
9.75e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 40.36 E-value: 9.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 755 GGRKTEELSSPFQVE-EVDDVSPGSRGLVEEEERDGESHVTFSVNQHQRTKQPGENVTHAEEVSEAGDSEgdqsyfvstP 833
Cdd:TIGR00927 642 GERTGEEGERPTEAEgENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETE---------A 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 834 DELPAGHDREDEGSVY-GQIHIEEESTIRyswQDEivqgtwrrRQRDSEAGERDVQDVDVPAHSPGGDMGSAHWKEEASG 912
Cdd:TIGR00927 713 EEVEHEGETEAEGTEDeGEIETGEEGEEV---EDE--------GEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEG 781
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 913 EFHAEPTVIEK--EIKIPHELHTSIRDTFSKEPREQLAEVIGKLEETLPERMKAELSTltrEGQGEPGSvsvDVKKLQTT 990
Cdd:TIGR00927 782 EIQAGEDGEMKgdEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNA---ENQGEAKQ---DEKGVDGG 855
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 512981511 991 GGSsvtlvaevNLSQTVDADQLDLEGLSRDEADEIEKAVESVVRESLS-----KRQGQA 1044
Cdd:TIGR00927 856 GGS--------DGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSlewpeTRQKQA 906
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
11-317 |
3.83e-20 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 92.68 E-value: 3.83e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 11 EKAELRDLNARLHDYVCRVRELERENQLLEEQLRGRRgeEQLWAEGQ---ARFAEEARGLRAQLDALSWETALAEGERDA 87
Cdd:pfam00038 2 EKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELR--QKKGAEPSrlySLYEKEIEDLRRQLDTLTVERARLQLELDN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 88 LRRELRELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALTVHFR 167
Cdd:pfam00038 80 LRLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDTQVNVE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 168 ARARPAAP-PPRLRELHGSCALLAAESWRESVQLYEDEVRELELA-----------------LRRGQESRREAEEEARRg 229
Cdd:pfam00038 160 MDAARKLDlTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAaarngdalrsakeeiteLRRTIQSLEIELQSLKK- 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 230 aqEAESLQRQALELEQlrvrleeelrrlreEHGLRAEERQRVIDCLEDEKEALTLAMAERLRDYQELVRVKTGLSLEVAT 309
Cdd:pfam00038 239 --QKASLERQLAETEE--------------RYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIAT 302
|
....*...
gi 512981511 310 YRALLEGE 317
Cdd:pfam00038 303 YRKLLEGE 310
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
13-315 |
8.02e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 8.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 13 AELRDLNARLHDYVCRVRELERENQLLEEQLRGRRGEEQLWAEGQARFAEEARGLRAQLDALSWETALAEGERDALRREL 92
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 93 RELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALTVHFRARARP 172
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 173 AAPPPRLRELHGScALLAAESWRESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQALELEQLRVRLEE 252
Cdd:COG1196 392 LRAAAELAAQLEE-LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 512981511 253 ELRRLREEHGLRAEERQRvidclEDEKEALTLAMAERLRDYQELVRVKTGLSLEVATYRALLE 315
Cdd:COG1196 471 EAALLEAALAELLEELAE-----AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
11-290 |
1.10e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 1.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 11 EKAELRDLNARLHDYVCRVRELERENQLLEEQLRGRRGEEQLWAEGQARFAEEARGLRAQLDALSWETALAEGERDALRR 90
Cdd:COG1196 279 LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEA 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 91 ELRELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALtvhfrara 170
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL-------- 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 171 rpaappPRLRELHGSCALLAAESWRESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQALELEQLRVRL 250
Cdd:COG1196 431 ------AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 512981511 251 EEELRRLREEHGLRAEERQRVIDCLEDEKEALTLAMAERL 290
Cdd:COG1196 505 GFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
11-315 |
4.07e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 4.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 11 EKAELRDLNARLHDYvcrvRELERENQLLEEQLRGRRGEEQLWAEGQARFAEEARGLRAQLDALSWETALAEGERDALRR 90
Cdd:COG1196 220 EELKELEAELLLLKL----RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 91 ELRELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALTVhfrara 170
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE------ 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 171 rpaappprlrelhgscALLAAESWRESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQALELEQLRVRL 250
Cdd:COG1196 370 ----------------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512981511 251 EEELRRLREEHGLRAEERQRvidcLEDEKEALTLAMAERLRDYQELVRVKTGLSLEVATYRALLE 315
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAE----LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
43-317 |
1.04e-07 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 56.56 E-value: 1.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 43 LRGRRGEEQLWAE--------GQARFAEEARGLRAQLDALSWETALAEGERDALRRELRELRRLGAEESAARGRLDAELV 114
Cdd:COG3903 557 LRGLLREGRRWLEralaaageAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAA 636
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 115 AQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALTVHFRARARPAAPPPRLRELHGSCALLAAESW 194
Cdd:COG3903 637 AAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAA 716
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 195 RESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQALELEQLRVRLEEELRRLREEHGLRAEERQRVIDC 274
Cdd:COG3903 717 AAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAA 796
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 512981511 275 LEDEKEALTLAMAERLRDYQELVRVKTGLSLEVATYRALLEGE 317
Cdd:COG3903 797 AAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAA 839
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
32-317 |
1.69e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 32 LERENQLLEEqLRGRRgeEQLwaEGQARFAEEARGLRAQLDALSWETALAEgeRDALRRELRELRRLGAEESAARGRLDA 111
Cdd:COG1196 188 LERLEDILGE-LERQL--EPL--ERQAEKAERYRELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 112 ELVAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALtvhfrararpAAPPPRLRELHgscalLAA 191
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR----------RELEERLEELE-----EEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 192 ESWRESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQALELEQLRVRLEEELRRLREEHGLRAEERQRV 271
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 512981511 272 IDCLEDEKEALTLAMAERLRDYQELVRVKTGLSLEVATYRALLEGE 317
Cdd:COG1196 406 EEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE 451
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
5-293 |
1.91e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 5 RLQTGPEKAELRDLNARLHDYVCRVRELERENQLLEEQLRGRRGEEQLWAEGQARFAEEARGLRAQLDALSWETALAEGE 84
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 85 RDALRRELRELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALTv 164
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE- 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 165 hfrararpaapPPRLRELHGSCALLAAE--SWRESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQALE 242
Cdd:TIGR02168 432 -----------EAELKELQAELEELEEEleELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 512981511 243 LEQLRVRLEEELRRLREEHGLraeeRQRVIDCLEDEKE---ALTLAMAERLRDY 293
Cdd:TIGR02168 501 LEGFSEGVKALLKNQSGLSGI----LGVLSELISVDEGyeaAIEAALGGRLQAV 550
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
11-321 |
6.27e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 6.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 11 EKAELRDLNARLHDYVCRVRELERENQLLEEQLRGRRGEEQLwAEGQARFAEEARGLRAQLDALSWETALAEGERDALRR 90
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE-AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 91 ELRELRRLGAEESAARGRLDAELVAQRRE-----------LQEALGARAALEAvLGRLQAERHGLDAARERAVRELRARA 159
Cdd:COG1196 526 VAVLIGVEAAYEAALEAALAAALQNIVVEddevaaaaieyLKAAKAGRATFLP-LDKIRARAALAAALARGAIGAAVDLV 604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 160 SALTVHFRARARPAAPPPRLRelhgscALLAAESWRESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQ 239
Cdd:COG1196 605 ASDLREADARYYVLGDTLLGR------TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 240 ALELEQLRVRLEEELRRLREEHGLRAEERQRVIDCLEDEKEALTLAMAERLRDYQELVRVKTGLSLEVATYRALLEGESN 319
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPE 758
|
..
gi 512981511 320 PE 321
Cdd:COG1196 759 PP 760
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
10-290 |
1.73e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 10 PEKAELRDLNARLHDYVCRVRELERENQLLEEQLrgrrgeeQLWAEGQARFAEEARGLRAQLDALSWETALAEGERDALR 89
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEEL-------EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 90 RELRELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALTVHFRAR 169
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 170 ARPAAPPPRLRElhgscallAAESWRESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQALELEQLRVR 249
Cdd:COG1196 459 EALLELLAELLE--------EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 512981511 250 LEEELRRLREEHGLRAEERQRVIDCLEDEKEALTLAMAERL 290
Cdd:COG1196 531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
13-315 |
6.72e-04 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 43.80 E-value: 6.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 13 AELRDLNARLHDYVCRVRELERENQLLEEQLRGRRGEEQLWAEGQARFAEEARGLRAQLDALSWETALAEGERDALRREL 92
Cdd:COG4995 153 LAAAAAAAAAAALLALALALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAAL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 93 RELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALTVHFRARARP 172
Cdd:COG4995 233 LALLLLALLALAAAAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAAL 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 173 AAPPPRLRELHGSCALLAAESWRESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQALELEQLRVRLEE 252
Cdd:COG4995 313 AALALLLLAALLLLLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAA 392
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 512981511 253 ELRRLREEHGLRAEERQRVIDCLEDEKEALTLAMAERLRDYQ--ELVRVKTGLSLEVATYRALLE 315
Cdd:COG4995 393 LLLLAAALLALAAAQLLRLLLAALALLLALAAYAAARLALLAliEYIILPDRLYAFVQLYQLLIA 457
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
11-317 |
9.32e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 43.47 E-value: 9.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 11 EKAELRDLNARLHDYVCRVRELERENQLLEEQLRGRRGEEQL---------WAEGQARFAEEARGLRAQLDALSWETALA 81
Cdd:COG3903 483 EAGERAAARRRHADYYLALAERAAAELRGPDQLAWLARLDAEhdnlraalrWALAHGDAELALRLAAALAPFWFLRGLLR 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 82 EGERDALRRELRELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASA 161
Cdd:COG3903 563 EGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAA 642
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 162 LTVHFRARARPAAPPPRLRELHGSCALLAAESWRESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQAL 241
Cdd:COG3903 643 AAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAA 722
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 512981511 242 ELEQLRVRLEEELRRLREEHGLRAEERQRVIDCLEDEKEALTLAMAERLRDYQELVRVKTGLSLEVATYRALLEGE 317
Cdd:COG3903 723 AAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAA 798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
30-316 |
9.36e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 9.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 30 RELERENQLLEEQLRGRRGEEQLWAEGQARFAEEARGLRAQLDALSWETALAEGERDALRRELRELRRLGAEESAARGRL 109
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 110 DAELVAQRRELQEALGARAALEAVLGRLQAERHGLDAAR---ERAVRELRARASALTVHFRARarpaappprlrelhgsc 186
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELkalREALDELRAELTLLNEEAANL----------------- 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 187 allaaeswRESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQALELEQlrvrleeelrrLREEHGLRAE 266
Cdd:TIGR02168 823 --------RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES-----------ELEALLNERA 883
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 512981511 267 ERQRVIDCLEDEKEALTLAMAERLRDYQELVRVKTGLSLEVATYRALLEG 316
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
12-161 |
1.10e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 12 KAELRDLNARLHDYVCRVRELERENQLLEEQLRG-RRGEEQLWAE----GQARFAEEARGLRAQLDALSWETALAEGERD 86
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREAlQRLAEYSWDEidvaSAEREIAELEAELERLDASSDDLAALEEQLE 695
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 512981511 87 ALRRELRELRRLGAEESAARGRLDAEL---VAQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASA 161
Cdd:COG4913 696 ELEAELEELEEELDELKGEIGRLEKELeqaEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEE 773
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
11-162 |
3.01e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 11 EKAELRDLNARLHDYVCRVRELERENQLLEEQLRGRRGE--EQL-----WAEGQARFAEEARG-LRAQLDALSWEtalAE 82
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDELEAQIRGNGGDrlEQLereieRLERELEERERRRArLEALLAALGLP---LP 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 83 GERDALRRELRELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAER----HGLDAARERAVRELRAR 158
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsnipARLLALRDALAEALGLD 456
|
....
gi 512981511 159 ASAL 162
Cdd:COG4913 457 EAEL 460
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3-155 |
5.17e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 3 SWRLQTGPEKAELRDLNARLHD-------YVCRVRELERENQLLEEQLRGRRGEeqlwaegQARFAEEARGLRAQLDALS 75
Cdd:TIGR02168 800 ALREALDELRAELTLLNEEAANlrerlesLERRIAATERRLEDLEEQIEELSED-------IESLAAEIEELEELIEELE 872
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 76 WETALAEGERDALRRELRELRRLGAEESAARGRLDAELVAQRRELQEALGARAALEAVLGRLQAER-HGLDAARERAVRE 154
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIdNLQERLSEEYSLT 952
|
.
gi 512981511 155 L 155
Cdd:TIGR02168 953 L 953
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
115-319 |
5.22e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 115 AQRRELQEALGARAALEAVLGRLQAERHGLDAARERAVRELRARASALTvhfrararpaapppRLRELHGSCALLAAESw 194
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE--------------ELRLELEELELELEEA- 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 195 RESVQLYEDEVRELELALRRGQESRREAEEEARRGAQEAESLQRQALELEQLRVRLEEELRRLREEHGLRAEERQRVIDC 274
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 512981511 275 LEDEKEALTLAMAERLRDYQELVRVKTGLSLEVATYRALLEGESN 319
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
|
| FUSC |
pfam04632 |
Fusaric acid resistance protein family; This family includes a conserved region found in two ... |
37-192 |
9.49e-03 |
|
Fusaric acid resistance protein family; This family includes a conserved region found in two proteins associated with fusaric acid resistance, from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.
Pssm-ID: 428044 [Multi-domain] Cd Length: 655 Bit Score: 40.35 E-value: 9.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 37 QLLEEQLRGRRGEEQLwAEGQARFAEEARGLRAQLDALSWETALAEGERDALRRELRELRRLGAEESAAR---GRLDAEL 113
Cdd:pfam04632 170 RLAAAALAGAPGAEAF-EAARLRLAADILALEALRSHAAFESPRGRARARALRRLLARMLALLPRLRSLArllARLRTEG 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 114 VAQRRELQEALGARAALEAVLgRLQAERHGLDAARERaVRELRARASALTV-HFRARARPAAPPPRLRELHGSCALLAAE 192
Cdd:pfam04632 249 AGTVPELAALLDELAAWEAAL-AAEALQAALAALRAR-LRALRPALPLDFDtAAELLARLADLLAELAEALASCRALRHP 326
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
755-1044 |
9.75e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 40.36 E-value: 9.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 755 GGRKTEELSSPFQVE-EVDDVSPGSRGLVEEEERDGESHVTFSVNQHQRTKQPGENVTHAEEVSEAGDSEgdqsyfvstP 833
Cdd:TIGR00927 642 GERTGEEGERPTEAEgENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETE---------A 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 834 DELPAGHDREDEGSVY-GQIHIEEESTIRyswQDEivqgtwrrRQRDSEAGERDVQDVDVPAHSPGGDMGSAHWKEEASG 912
Cdd:TIGR00927 713 EEVEHEGETEAEGTEDeGEIETGEEGEEV---EDE--------GEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEG 781
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512981511 913 EFHAEPTVIEK--EIKIPHELHTSIRDTFSKEPREQLAEVIGKLEETLPERMKAELSTltrEGQGEPGSvsvDVKKLQTT 990
Cdd:TIGR00927 782 EIQAGEDGEMKgdEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNA---ENQGEAKQ---DEKGVDGG 855
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 512981511 991 GGSsvtlvaevNLSQTVDADQLDLEGLSRDEADEIEKAVESVVRESLS-----KRQGQA 1044
Cdd:TIGR00927 856 GGS--------DGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSlewpeTRQKQA 906
|
|
| |
