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Conserved domains on  [gi|460372345|ref|XP_004231991|]
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U-box domain-containing protein 2 isoform X1 [Solanum lycopersicum]

Protein Classification

armadillo/beta-catenin-like repeat-containing protein( domain architecture ID 10453181)

armadillo/beta-catenin-like repeat-containing protein; similar to human armadillo repeat-containing protein 1, human radial spoke head 14 homolog, and Bos taurus Rap1 GTPase-GDP dissociation stimulator 1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03200 super family cl33659
cellulose synthase-interactive protein; Provisional
 160-335 5.79e-05

cellulose synthase-interactive protein; Provisional


The actual alignment was detected with superfamily member PLN03200:

Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 45.48  E-value: 5.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345  160 LLVEIIRHGSSQAKADAVMALSNLSTYQDNLLSILRAQP-IPSTVSLLKsckKSSKTTERCTALIESLMCYEEGRSS-LI 237
Cdd:PLN03200  408 VLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREgVQLLISLLG---LSSEQQQEYAVALLAILTDEVDESKwAI 484

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345  238 SEDGGVLAVVEVLESGSAQSREHAVGALLTMCqSDRTKYREPILREGVIPGLLELTVQGTAKSR-TKAQTLLRLLRDTpy 316
Cdd:PLN03200  485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLC-CHSEDIRACVESAGAVPALLWLLKNGGPKGQeIAAKTLTKLVRTA-- 561

                         170
                  ....*....|....*....
gi 460372345  317 prselEPDTLENIVSSLIS 335
Cdd:PLN03200  562 -----DAATISQLTALLLG 575
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 104-144 1.25e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


:

Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 36.28  E-value: 1.25e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 460372345  104 DEGNKISIIDAGALEPIVDFLQSENAILQDHATAALLTLSA 144
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
PLN03200 super family cl33659
cellulose synthase-interactive protein; Provisional
 20-183 7.27e-03

cellulose synthase-interactive protein; Provisional


The actual alignment was detected with superfamily member PLN03200:

Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 38.54  E-value: 7.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345   20 FSDGDIRRTTTSSSAVQQTLFLIQSDDPTLKVQAAKEIRRLTKTSQ-RYRRHFSNAVKPLVDMLRSESfESNEAALLALL 98
Cdd:PLN03200 1219 FSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHiRDSELARQAVQPLVEMLNTGS-ESEQHAAIGAL 1297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345   99 NLAVKDEGNKISII---DAGALEPIVDFLqSENAILQDHATAALL--TLSASPATKPIISASGVFSLLVEIIRHGSSQAK 173
Cdd:PLN03200 1298 IKLSSGNPSKALAIadvEGNALENLCKIL-SSDSSLELKEDAAELcrVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQ 1376

                         170
                  ....*....|
gi 460372345  174 ADAVMALSNL 183
Cdd:PLN03200 1377 EAGVCALDRL 1386
 
Name Accession Description Interval E-value
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 160-335 5.79e-05

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 45.48  E-value: 5.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345  160 LLVEIIRHGSSQAKADAVMALSNLSTYQDNLLSILRAQP-IPSTVSLLKsckKSSKTTERCTALIESLMCYEEGRSS-LI 237
Cdd:PLN03200  408 VLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREgVQLLISLLG---LSSEQQQEYAVALLAILTDEVDESKwAI 484

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345  238 SEDGGVLAVVEVLESGSAQSREHAVGALLTMCqSDRTKYREPILREGVIPGLLELTVQGTAKSR-TKAQTLLRLLRDTpy 316
Cdd:PLN03200  485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLC-CHSEDIRACVESAGAVPALLWLLKNGGPKGQeIAAKTLTKLVRTA-- 561

                         170
                  ....*....|....*....
gi 460372345  317 prselEPDTLENIVSSLIS 335
Cdd:PLN03200  562 -----DAATISQLTALLLG 575
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 104-144 1.25e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 36.28  E-value: 1.25e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 460372345  104 DEGNKISIIDAGALEPIVDFLQSENAILQDHATAALLTLSA 144
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 20-183 7.27e-03

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 38.54  E-value: 7.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345   20 FSDGDIRRTTTSSSAVQQTLFLIQSDDPTLKVQAAKEIRRLTKTSQ-RYRRHFSNAVKPLVDMLRSESfESNEAALLALL 98
Cdd:PLN03200 1219 FSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHiRDSELARQAVQPLVEMLNTGS-ESEQHAAIGAL 1297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345   99 NLAVKDEGNKISII---DAGALEPIVDFLqSENAILQDHATAALL--TLSASPATKPIISASGVFSLLVEIIRHGSSQAK 173
Cdd:PLN03200 1298 IKLSSGNPSKALAIadvEGNALENLCKIL-SSDSSLELKEDAAELcrVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQ 1376

                         170
                  ....*....|
gi 460372345  174 ADAVMALSNL 183
Cdd:PLN03200 1377 EAGVCALDRL 1386
 
Name Accession Description Interval E-value
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 160-335 5.79e-05

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 45.48  E-value: 5.79e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345  160 LLVEIIRHGSSQAKADAVMALSNLSTYQDNLLSILRAQP-IPSTVSLLKsckKSSKTTERCTALIESLMCYEEGRSS-LI 237
Cdd:PLN03200  408 VLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREgVQLLISLLG---LSSEQQQEYAVALLAILTDEVDESKwAI 484

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345  238 SEDGGVLAVVEVLESGSAQSREHAVGALLTMCqSDRTKYREPILREGVIPGLLELTVQGTAKSR-TKAQTLLRLLRDTpy 316
Cdd:PLN03200  485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLC-CHSEDIRACVESAGAVPALLWLLKNGGPKGQeIAAKTLTKLVRTA-- 561

                         170
                  ....*....|....*....
gi 460372345  317 prselEPDTLENIVSSLIS 335
Cdd:PLN03200  562 -----DAATISQLTALLLG 575
Arm pfam00514
Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form ...
 104-144 1.25e-03

Armadillo/beta-catenin-like repeat; Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats.


Pssm-ID: 425727 [Multi-domain]  Cd Length: 41  Bit Score: 36.28  E-value: 1.25e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 460372345  104 DEGNKISIIDAGALEPIVDFLQSENAILQDHATAALLTLSA 144
Cdd:pfam00514   1 SPENKQAVIEAGAVPPLVRLLSSPDEEVQEEAAWALSNLAA 41
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 132-312 4.89e-03

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 39.32  E-value: 4.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345  132 QDHATAALLTLSAS--PATKPIISASGVFSLLVEIIRHGSSQAKADAVMALSNLSTYQDNLLSILRAQPIPSTVSLLKsc 209
Cdd:PLN03200   32 KELTTARLLELAKTreEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLK-- 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345  210 kksSKTTERCTALIESLMCYEEGRSS------LISEDGGVLAVVEVLESGSAQSRE---HAVGALLTMCqSDRTKYREPI 280
Cdd:PLN03200  110 ---SGSAEAQKAAAEAIYAVSSGGLSdhvgskIFSTEGVVPSLWDQLQPGNKQDKVvegLLTGALRNLC-GSTDGFWSAT 185

                         170       180       190
                  ....*....|....*....|....*....|...
gi 460372345  281 LREGVIPGLLELTVQGTAKSRTKAQTLL-RLLR 312
Cdd:PLN03200  186 LEAGGVDILVKLLSSGNSDAQANAASLLaRLMM 218
PLN03200 PLN03200
cellulose synthase-interactive protein; Provisional
 20-183 7.27e-03

cellulose synthase-interactive protein; Provisional


Pssm-ID: 215629 [Multi-domain]  Cd Length: 2102  Bit Score: 38.54  E-value: 7.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345   20 FSDGDIRRTTTSSSAVQQTLFLIQSDDPTLKVQAAKEIRRLTKTSQ-RYRRHFSNAVKPLVDMLRSESfESNEAALLALL 98
Cdd:PLN03200 1219 FSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHiRDSELARQAVQPLVEMLNTGS-ESEQHAAIGAL 1297

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 460372345   99 NLAVKDEGNKISII---DAGALEPIVDFLqSENAILQDHATAALL--TLSASPATKPIISASGVFSLLVEIIRHGSSQAK 173
Cdd:PLN03200 1298 IKLSSGNPSKALAIadvEGNALENLCKIL-SSDSSLELKEDAAELcrVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQ 1376

                         170
                  ....*....|
gi 460372345  174 ADAVMALSNL 183
Cdd:PLN03200 1377 EAGVCALDRL 1386
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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